NO10G01240.2, NO10G01240.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01240.2
Unique NameNO10G01240.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1210
Alignment locationchr10:367358..369239 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:367358..369239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01240.2 vs.
Match: EWM25391.1 (ribokinase [Nannochloropsis gaditana])

HSP 1 Score: 356.3 bits (913), Expect = 9.300e-95
Identity = 188/288 (65.28%), Postives = 225/288 (78.12%), Query Frame = 0 
Query:    9 GETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRGAPLNEAATKAGEMASLSVCKAGTQTSYPFAKDLPAHLQL 297
            G T+ G   +TC GGKGGNQAVMAARLGAPT+MVG VG D++GNT+REA   +GV  + L + ADG +TGTA ILVNG G+NMII+ AGANG+LTP DVQAAE  IA AAV+MVQ+E+P E + EALRLA+AH+VFSILNPAPAP G L QE L+ ASLVCPNETELA+LTQ P  T+ E++AAAHRLR MGAA VLVTLG +G LL+T ++      L PS +VE VVDTSGAGDC+IGSLAA+LS G  L +A + A E+AS+SV KAGTQ SYP+  +LP  LQL
Sbjct:   31 GRTLQGSHSATCCGGKGGNQAVMAARLGAPTSMVGMVGRDVFGNTLREALIHDGVSIKPLREAADGTSTGTAQILVNGRGENMIIITAGANGKLTPTDVQAAESDIAAAAVVMVQLEVPLEATREALRLARAHEVFSILNPAPAPRGGLDQELLSLASLVCPNETELAVLTQKPAKTLSEIEAAAHRLRGMGAARVLVTLGERGTLLVTEKDGEDHVLLTPSPKVEMVVDTSGAGDCFIGSLAAYLSSGMALPQAVSNACELASISVGKAGTQISYPYKHELPERLQL 318
The following BLAST results are available for this feature:
BLAST of NO10G01240.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25391.19.300e-9565.28ribokinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01240NO10G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01240.2NO10G01240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01240.2.cds1NO10G01240.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01240.2.cds2NO10G01240.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01240.2.cds3NO10G01240.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01240.2.cds4NO10G01240.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01240.2.cds5NO10G01240.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01240.2 ID=NO10G01240.2|Name=NO10G01240.2|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp
ACAGATGATGAACAGGCGTTGTGGCGTGGTGTGCGTTGGCAGCCTTAACA
TCGACTTATTATGCTATCTTGGCGGCCAATTTCCATCGCCCGGTGAGTCG
TGAGACAGCCAGTGCTGCATGGGGCCGCATTTTTAACACATACATGCAAC
ACGCCGCTAATCCTCTAGGAGAGACTGTCCATGGCCTCCGCTTCTCCACG
TGCCTTGGGGGGAAAGGGGGGAACCAGGCGGTGATGGCGGCGCGCCTTGG
GGCCCCGACTGCCATGGTGGGAAGGGTGGGAAATGATTTGTATGGCAACA
CAATAAGGGAGGCTTTCGAGGGGAACGGTGTCGACACGAGGTACCTCCTC
AAGACGGCAGACGGGATCGCCACGGGCACTGCTCACATCCTGGTCAATGG
TGAAGGCCAAAATATGATCATCGTAATAGCTGGTGCGAACGGGCAATTAA
CACCCGCGGACGTACAGGCAGCAGAAGATGTCATAGCGCAAGCAGCAGTC
TTAATGGTGCAGATGGAAATCCCTACCGAGACGAGTTTTGAGGCCCTGCG
TCTTGCCAAAGCCCATGACGTCTTCAGCATCCTCAACCCGGCCCCAGCAC
CGGATGGAAGGCTCAGTCAGGAGTTTCTCGCCTTCGCCTCCCTCGTCTGC
CCCAACGAGACGGAACTTGCCATTCTCACCCAGCTGCCGGTTGGGACCAT
TCCTGAGGTCCAAGCGGCAGCTCACAGACTCCGAGAGATGGGTGCTGCGA
GTGTACTCGTTACGCTGGGAGCTCAGGGTGCTTTGTTGATGACGGCGGAG
AACGCGGCACAGGGTGGTCAGTTAATTCCTTCGAAGCGTGTTGAGCGAGT
GGTGGACACGAGTGGCGCAGGCGATTGTTACATCGGAAGCTTGGCAGCAT
TTCTCTCTCGAGGGGCGCCTCTCAATGAAGCTGCCACCAAGGCCGGTGAG
ATGGCCTCACTAAGTGTCTGCAAGGCGGGGACACAAACATCCTATCCTTT
TGCGAAAGATCTCCCGGCACACTTGCAGCTTCCACAAATAGCTTGAGTCA
GCATTATCAGAGGGAGAGGAAGCAGAGGAGGTTTGTGGAGCAGGAAGGTG
CAAATTTCAATTTGGAAGGTAAAATAGGAAGAAAGTGAATTTGAGTGCAA
ATAAAAAAGAAATAAGAAATGTAAGCGGCTGCAGACAAGCCCAGAAAATG
CTAAGTGGGA
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protein sequence of NO10G01240.2

>NO10G01240.2-protein ID=NO10G01240.2-protein|Name=NO10G01240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MQHAANPLGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLY
GNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANG
QLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPA
PAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMG
AASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSL
AAFLSRGAPLNEAATKAGEMASLSVCKAGTQTSYPFAKDLPAHLQLPQIA
*
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mRNA from alignment at chr10:367358..369239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01240.2 ID=NO10G01240.2|Name=NO10G01240.2|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at chr10:367358..369239- (Nannochloropsis oceanica)
ACAGATGATGAACAGGCGTTGTGGCGTGGTGTGCGTTGGCAGCCTTAACA
TCGACTTATTATGCTATCTTGGCGGCCAATTTCCATCGCCCGGTGAGTCG
TGAGACAGCCAGTGCTGCATGGGGCCGCATTTTTAACACATACATGCAAC
ACGCCGCTAATCCTCTAGGAGAGACTGTCCATGGCCTCCGCTTCTCCACG
TGCCTTGGGGGGAAAGGGGGGAACCAGGCGGTGATGGCGGCGCGCCTTGG
GGCCCCGACTGCCATGGTGGGAAGGGTGGGAAATGATTTGTATGGCAACA
CAATAAGGGAGGCTTTCGAGGGGAACGGTGTCGACACGAGGTAATGGAAT
GTATACCTGTATACTGAAATGCGATTTCTTTCCACTTATTCTGGTGTCTC
ATCATTATTAATGTACGTCAGGTACCTCCTCAAGACGGCAGACGGGATCG
CCACGGGCACTGCTCACATCCTGGTCAATGGTGAAGGCCAAAATATGATC
ATCGTAATAGCTGGTGCGAACGGGCAATTAACACCCGCGGACGTACAGGC
AGCAGAAGATGTCATAGCGCAAGCAGCAGTCTTAATGGTACGTGCTTGTA
TGGAGGTGTGATCTCGTTGCCTGTGAAACAAACGACTGCATTTACATAAT
ATGGCCGATGCACAGGTGCAGATGGAAATCCCTACCGAGACGAGTTTTGA
GGCCCTGCGTCTTGCCAAAGCCCATGACGTCTTCAGCATCCTCAACCCGG
CCCCAGCACCGGATGGAAGGCTCAGTCAGGTCCGTGCGATTTCAACGAAA
GTCACTGCGGGCACTGTCATAGGGTTGATATCGATTTCACAAGCTGAAAA
ATTGACATGGTTATTGGCAACCTCATGAATTCGGGGGTAATATCATTGTA
GGGCTTCCTGAGGGCGTCAGTGCCGAGTGTAGGGAGATCATACAAAATCT
TGGTAGGAGGGGAGAGGTCCTCCCAGCCCTCCTTACCATTTCTGTGACAT
TCTTGTTCCTACCACTACACTTAACAACCGACCAAAAACCGGTCCTACTC
GCTGCTGACCATACATATATATCATATATTACACATATTGCATCTCTCTC
CCCTTCCCCCCCGACAGGAGTTTCTCGCCTTCGCCTCCCTCGTCTGCCCC
AACGAGACGGAACTTGCCATTCTCACCCAGCTGCCGGTTGGGACCATTCC
TGAGGTCCAAGCGGCAGCTCACAGACTCCGAGAGATGGGTGCTGCGAGTG
TACTCGTTACGCTGGGAGCTCAGGGTGCTTTGTTGATGACGGCGGAGAAC
GCGGCACAGGGTGGTCAGTTAATTCCTTCGAAGCGTGTTGAGCGAGTGGT
GGACACGAGTGGCGCAGGCGATTGTTACATCGGAAGCTTGGCAGCATTTC
TCTCTCGAGGGGTACGTCAACGGGAAGAGCGTGCGTTTTTGTGAGTAAAT
TCTATTTCTCCCCCCCCCCTCTCTCTCTCTCTCTCTCTGTCACTCTCTCC
CTCTCCCTCTCCCACTCTTCTCTCTGTATTTTCTGTTTTTACAGCAATCA
CCTTATCCTTATATGTGCGTTACGTACGATTTAAAGGCGCCTCTCAATGA
AGCTGCCACCAAGGCCGGTGAGATGGCCTCACTAAGTGTCTGCAAGGCGG
GGACACAAACATCCTATCCTTTTGCGAAAGATCTCCCGGCACACTTGCAG
CTTCCACAAATAGCTTGAGTCAGCATTATCAGAGGGAGAGGAAGCAGAGG
AGGTTTGTGGAGCAGGAAGGTGCAAATTTCAATTTGGAAGGTAAAATAGG
AAGAAAGTGAATTTGAGTGCAAATAAAAAAGAAATAAGAAATGTAAGCGG
CTGCAGACAAGCCCAGAAAATGCTAAGTGGGA
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Coding sequence (CDS) from alignment at chr10:367358..369239-

>NO10G01240.2 ID=NO10G01240.2|Name=NO10G01240.2|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr10:367358..369239- (Nannochloropsis oceanica)
ATGCAACACGCCGCTAATCCTCTAGGAGAGACTGTCCATGGCCTCCGCTT
CTCCACGTGCCTTGGGGGGAAAGGGGGGAACCAGGCGGTGATGGCGGCGC
GCCTTGGGGCCCCGACTGCCATGGTGGGAAGGGTGGGAAATGATTTGTAT
GGCAACACAATAAGGGAGGCTTTCGAGGGGAACGGTGTCGACACGAGGTA
CCTCCTCAAGACGGCAGACGGGATCGCCACGGGCACTGCTCACATCCTGG
TCAATGGTGAAGGCCAAAATATGATCATCGTAATAGCTGGTGCGAACGGG
CAATTAACACCCGCGGACGTACAGGCAGCAGAAGATGTCATAGCGCAAGC
AGCAGTCTTAATGGTGCAGATGGAAATCCCTACCGAGACGAGTTTTGAGG
CCCTGCGTCTTGCCAAAGCCCATGACGTCTTCAGCATCCTCAACCCGGCC
CCAGCACCGGATGGAAGGCTCAGTCAGGAGTTTCTCGCCTTCGCCTCCCT
CGTCTGCCCCAACGAGACGGAACTTGCCATTCTCACCCAGCTGCCGGTTG
GGACCATTCCTGAGGTCCAAGCGGCAGCTCACAGACTCCGAGAGATGGGT
GCTGCGAGTGTACTCGTTACGCTGGGAGCTCAGGGTGCTTTGTTGATGAC
GGCGGAGAACGCGGCACAGGGTGGTCAGTTAATTCCTTCGAAGCGTGTTG
AGCGAGTGGTGGACACGAGTGGCGCAGGCGATTGTTACATCGGAAGCTTG
GCAGCATTTCTCTCTCGAGGGGCGCCTCTCAATGAAGCTGCCACCAAGGC
CGGTGAGATGGCCTCACTAAGTGTCTGCAAGGCGGGGACACAAACATCCT
ATCCTTTTGCGAAAGATCTCCCGGCACACTTGCAGCTTCCACAAATAGCT
TGA
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Synonyms
Publications