NO10G00990, NO10G00990 (gene) Nannochloropsis oceanica

Overview
NameNO10G00990
Unique NameNO10G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1602
Alignment locationchr10:306992..308593 -

Link to JBrowse

Properties
Property NameValue
DescriptionWinged helix-turn-helix transcription repressor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:306992..308593 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR036390WH_DNA-bd_sf
IPR000504RRM_dom
IPR006630Lupus_La_RNA-bd
Homology
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BLAST of NO10G00990 vs. NCBI_GenBank
Match: EWM25337.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 274.2 bits (700), Expect = 8.300e-70
Identity = 166/412 (40.29%), Postives = 224/412 (54.37%), Query Frame = 0 
Query:  150 DAMQYEVDFLFSLEHLAQDYIIAKHMRSGSIPVTKFLGLPRMKSLLASFNLTSNGGGPERSLLAEAVGRSKVVVLREHEKKIGRRDYSTGGDLAWRCVVITHLPQDSTEASVKELVDKYGEVARIAVG----EEXXXXXXXXXXXMRAIVQFVAPGGALKCADALGGTKANWRVSHKVAYLNGYSVAQMTXXXXXXXXXXXXXXXXXXXXXSDVVSSSS-------------LPKEKV-------------SLALPPVIPEGEHTGIVWEVDGGGVGTG-RGVLKREGQRRTIISFDLPVSLTLAVGDRVAFSVKHVENKAVVQNITMAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNNAPKNGNTMAKGPDTSIGFKMPRTKPPFELTELLEGLKVGVGGEKE 531
            D++++ ++ LFSLE+L  +Y IAKHMRSGSIPVTK L LP+++ +L +   T    G ER LLA+AV  S  V   E+ KKIGR D+S+GGDLA+RCV I  LP+ STEASV+ LVD++GEV  + +G    E             +A+V+F AP GAL+C D L GTK+NWR S +V +LNG+S  Q+                          S+ S             +P  +              +  LPPV+PEG+HTG + E++    G G RGVLKREGQRRT++SF    +  LAVG+RVAFSVKH+++KAVVQN+ +APP                                      +NG  MA+GP  S GF  PRT+P  E+ ELL+ LK+    +KE
Sbjct:  135 DSLRHAIEALFSLENLKTNYTIAKHMRSGSIPVTKLLSLPQIRQVLENVGGTC---GQERLLLAQAVAHSNSVATCENGKKIGRVDHSSGGDLAFRCVEIRSLPEGSTEASVRALVDRFGEVTHVKLGGMDEEGKEKDEKPPCQGEQALVEFAAPAGALQCVDTLSGTKSNWRSSVRVTFLNGFSTGQVATMAGLEILHAAQEGGATTLKGPQKESTGSGGSCSATSGIPGPVPTTRXXXXXXXPASTLAGACLLPPVLPEGDHTGHIVELEVDAAGRGVRGVLKREGQRRTLVSFQYSDAAPLAVGERVAFSVKHIDSKAVVQNLVVAPPLPSTPLSTLNSGARTGAARPLGGRVIP---------TTRNGGIMARGPSGSHGFHFPRTRPSGEVLELLDALKLNGAQQKE 534
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BLAST of NO10G00990 vs. NCBI_GenBank
Match: XP_005853772.1 (hypothetical protein NGA_0175502 [Nannochloropsis gaditana CCMP526] >XP_005854586.1 hypothetical protein NGA_0175501 [Nannochloropsis gaditana CCMP526] >EKU21767.1 hypothetical protein NGA_0175501 [Nannochloropsis gaditana CCMP526] >EKU22582.1 hypothetical protein NGA_0175502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 271.9 bits (694), Expect = 4.100e-69
Identity = 167/412 (40.53%), Postives = 224/412 (54.37%), Query Frame = 0 
Query:  150 DAMQYEVDFLFSLEHLAQDYIIAKHMRSGSIPVTKFLGLPRMKSLLASFNLTSNGGGPERSLLAEAVGRSKVVVLREHEKKIGRRDYSTGGDLAWRCVVITHLPQDSTEASVKELVDKYGEVARIAVG----EEXXXXXXXXXXXMRAIVQFVAPGGALKCADALGGTKANWRVSHKVAYLNGYSVAQMTXXXXXXXXXXXXXXXXXXXXXSDVVSSSS------------------------LPKEKVSLA--LPPVIPEGEHTGIVWEVDGGGVGTG-RGVLKREGQRRTIISFDLPVSLTLAVGDRVAFSVKHVENKAVVQNITMAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNNAPKNGNTMAKGPDTSIGFKMPRTKPPFELTELLEGLKVGVGGEKE 531
            D++++ ++ LFSLE+L  +Y IAKHMRSGSIPVTK L LP+++ +L +   T    G ER LLA+AV  SK V   E+ KKIGR D+S+G DLA+RCV I  LP+ STEASV+ LVD++GEV  + +G    E             +A+V+F AP GAL+C D L GTK+NWR S +V +LNG+S  Q+                          S+ S                         P   ++ A  LPPV+PEG+HTG + E++    G G RGVLKREGQRRT++SF    +  LAVG+RVAFSVKH+++KAVVQN+ +APP                                      +NG  MA+GP  S GF  PRT+P  E+ ELL+ LK+    +KE
Sbjct:  109 DSLRHAIEALFSLENLKTNYTIAKHMRSGSIPVTKLLSLPQIRQVLENVGGTC---GQERLLLAQAVAHSKSVATCENGKKIGRVDHSSGCDLAFRCVEIRSLPEGSTEASVRALVDRFGEVTHVKLGGLDEEGKEKDEKPPCQGEQALVEFAAPAGALQCVDTLSGTKSNWRSSVRVTFLNGFSTGQVATMAGLEILHAAQEGGATTLKGPQKESTGSGGSCSATSGIPGPVPTTRXXXXXXXPASTLAGACFLPPVLPEGDHTGHIVELEVDAAGRGVRGVLKREGQRRTLVSFQYSDAAPLAVGERVAFSVKHIDSKAVVQNLVVAPPLPSTPLSTLNSGARTGAARPLGGRVIP---------KTRNGGIMARGPSGSHGFHYPRTRPSGEVLELLDALKLNGAQQKE 508
The following BLAST results are available for this feature:
BLAST of NO10G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25337.18.300e-7040.29Winged helix-turn-helix transcription repressor [N... [more]
XP_005853772.14.100e-6940.53hypothetical protein NGA_0175502 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000968NSK000968Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00990.1NO10G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100196g8gene5173Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00990.1NO10G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00990 ID=NO10G00990|Name=NO10G00990|organism=Nannochloropsis oceanica|type=gene|length=1602bp
ATGAACGGTCGGAATCAGCCTCGGGGAATGAGTGGAGCTTCCCAGCAGTA
TGTCCCTTCGTCGGCGGTGCCCATGCCGCCTTCGCAAGGGCCGTACGCCC
AGTATTACCCACAACATCAGCAGCAGCAATATCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGGTTTCTCGCACCGCCACCACTACCAGCGCCA
GGGCTACCCTCATCCGCAGCACCAGCAGCATCAGTACCACCATTACCCGC
AATACCAGCAGCAGCAGCACTGGGAACAGCAGCAGCAACAACAACAACAA
CAACAACAACAGCAGCAGCAACAGCAGCAACAGTCGTACGATGGTGGTTG
TACCCAACACCATCCCGGCATGCTGAACACAAGCCATCCTCCACCCCTTC
CTCCTCCTCTTCCTCCTCCTTCTCCTCCCTTCGACCCCGCCCTCATCGAC
GCGATGCAATACGAAGTGGACTTTCTATTTTCCCTCGAACATTTAGCACA
AGACTATATCATTGCGAAACACATGCGCAGCGGCTCCATCCCCGTCACCA
AGTTCCTAGGTCTCCCACGAATGAAGAGCTTGCTTGCCTCCTTCAATCTC
ACAAGCAACGGAGGGGGTCCTGAGCGATCGCTTCTCGCCGAAGCCGTGGG
ACGGTCAAAAGTGGTGGTGTTAAGAGAGCATGAGAAAAAAATAGGGAGGA
GGGATTATTCCACAGGAGGCGACTTGGCGTGGCGGTGTGTAGTGATCACA
CATCTCCCCCAGGACAGCACCGAGGCGAGCGTGAAGGAGCTGGTGGATAA
ATACGGAGAGGTGGCAAGAATCGCGGTGGGAGAAGAGGGTGAGGATGGGA
ATGAGGGAGGGAGGGAAGGAATGAGGGCGATAGTGCAGTTTGTGGCGCCG
GGAGGGGCCTTAAAATGTGCGGATGCCCTAGGAGGCACGAAGGCCAATTG
GCGCGTGTCTCATAAAGTGGCTTATTTGAATGGGTACAGCGTTGCGCAGA
TGACGCAGGTCCTGGGGTTGGCGGGAAAAGGAGGAGAAGGAGGAGAATCT
TCTGGAATTTCGGGTGGGAGTGATGTCGTTTCGTCCTCGTCGTTGCCGAA
GGAAAAGGTGTCTTTGGCATTACCCCCAGTCATTCCCGAGGGGGAGCACA
CAGGCATTGTGTGGGAGGTGGACGGAGGAGGGGTAGGAACAGGGAGGGGG
GTGTTGAAGAGGGAAGGGCAACGACGGACGATTATTTCCTTCGACCTTCC
CGTAAGCTTGACCCTGGCCGTGGGGGATCGGGTGGCGTTCTCTGTGAAGC
ACGTCGAGAATAAGGCGGTCGTGCAGAATATTACCATGGCACCACCCCTA
TCCTCCCTCCTTTCCTCCTCCTCGGTATCCTCCTCCTCTTCTTCCATGAC
CTCGTCTTCGTCGTCCTCGCCGTCGACAGCTGCACGGGGCGCAGGGAGGA
ATAACGCTCCGAAGAATGGGAACACCATGGCTAAAGGCCCCGACACTTCG
ATAGGTTTCAAGATGCCACGGACCAAGCCGCCTTTTGAGCTGACAGAATT
GCTGGAGGGTTTAAAAGTGGGAGTTGGAGGGGAGAAGGAGGGCCAAAAGT
GA
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protein sequence of NO10G00990.1

>NO10G00990.1-protein ID=NO10G00990.1-protein|Name=NO10G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MNGRNQPRGMSGASQQYVPSSAVPMPPSQGPYAQYYPQHQQQQYQQQQQQ
QQQQQQGFSHRHHYQRQGYPHPQHQQHQYHHYPQYQQQQHWEQQQQQQQQ
QQQQQQQQQQQSYDGGCTQHHPGMLNTSHPPPLPPPLPPPSPPFDPALID
AMQYEVDFLFSLEHLAQDYIIAKHMRSGSIPVTKFLGLPRMKSLLASFNL
TSNGGGPERSLLAEAVGRSKVVVLREHEKKIGRRDYSTGGDLAWRCVVIT
HLPQDSTEASVKELVDKYGEVARIAVGEEGEDGNEGGREGMRAIVQFVAP
GGALKCADALGGTKANWRVSHKVAYLNGYSVAQMTQVLGLAGKGGEGGES
SGISGGSDVVSSSSLPKEKVSLALPPVIPEGEHTGIVWEVDGGGVGTGRG
VLKREGQRRTIISFDLPVSLTLAVGDRVAFSVKHVENKAVVQNITMAPPL
SSLLSSSSVSSSSSSMTSSSSSSPSTAARGAGRNNAPKNGNTMAKGPDTS
IGFKMPRTKPPFELTELLEGLKVGVGGEKEGQK*
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Synonyms
Publications