NO10G00970, NO10G00970 (gene) Nannochloropsis oceanica

Overview
NameNO10G00970
Unique NameNO10G00970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2238
Alignment locationchr10:300995..303232 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:300995..303232 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G00970 vs. NCBI_GenBank
Match: XP_005854594.1 (hypothetical protein NGA_0176300 [Nannochloropsis gaditana CCMP526] >EKU21775.1 hypothetical protein NGA_0176300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 107.8 bits (268), Expect = 8.300e-20
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   93 SHSFHSSAPSLGGGTPGEWNHVWNWKIKKRLATMEEEGNKXXXXXXXXXXXXXXXXXXXXXXPLPGEKVIALDENLPDGALEAYWAELRRERE 186
            ++ FHSSA  LGGGTP +WNHVWNWK+K+RLA M+E   K                      PLPGE+VI LDENLPDG LE YWAELRRERE
Sbjct:   48 NYGFHSSASVLGGGTPTKWNHVWNWKMKQRLAAMKEADEK------PQQSEEKSHEKDNMFRPLPGERVIELDENLPDGVLEEYWAELRRERE 134          
BLAST of NO10G00970 vs. NCBI_GenBank
Match: EWM25339.1 (hypothetical protein Naga_100196g12 [Nannochloropsis gaditana])

HSP 1 Score: 107.8 bits (268), Expect = 8.300e-20
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   93 SHSFHSSAPSLGGGTPGEWNHVWNWKIKKRLATMEEEGNKXXXXXXXXXXXXXXXXXXXXXXPLPGEKVIALDENLPDGALEAYWAELRRERE 186
            ++ FHSSA  LGGGTP +WNHVWNWK+K+RLA M+E   K                      PLPGE+VI LDENLPDG LE YWAELRRERE
Sbjct:   48 NYGFHSSASVLGGGTPTKWNHVWNWKMKQRLAAMKEADEK------PQQSEEKSHEKDNMFRPLPGERVIELDENLPDGVLEEYWAELRRERE 134          
The following BLAST results are available for this feature:
BLAST of NO10G00970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854594.18.300e-2056.99hypothetical protein NGA_0176300 [Nannochloropsis ... [more]
EWM25339.18.300e-2056.99hypothetical protein Naga_100196g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000966NSK000966Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00970.1NO10G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565320gene_4121Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100196g12gene5175Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00970.1NO10G00970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00970 ID=NO10G00970|Name=NO10G00970|organism=Nannochloropsis oceanica|type=gene|length=2238bp
ATGAGCGCCGGCGTCCGTCGCCGACATCATCTCCCGGTCACGTTACCGCA
CTCTGTCTCTCAAGCACAAAGCAGCAAATGGCAAGTGCCCTCCGAGCCCA
ACCGCACCCTGGAGATCATACACATGCCGCAGgtgtgccaggctggttga
ttgttttaactgcgacggcatccattttcatcatatcagaggacctgcca
aaatccagcagtagcatcgtcatgtcccatgctttcacccatgtgacaca
cgtcacctatcaaacacagGGGGACCTAGTCATGCATGCCCTCACGTCTA
CGATACCTGCCTTGGGTGTTAGAAGGAACCTGGCGCAGCATTTGCTCAAG
AAGCGTCCACTGCTGATGGGAGGAGGCGGAGGAGCAGGTGGAGACTCAGG
ACTCCTGCATAACTCTCATAGCTTTCACAGCTCGGCGCCTTCGCTGGGAG
GCGGCACACCGGGGGAATGGAATCACGgtgagtgttcattttaagatgag
atgtgggtgatttgtaggtgcagattgggaggtgcgttggatagaagagg
aaaggagagaaaagcggagtaaaggaggaggcatcggcgttccaggaggc
gtttttaggattttgataaatcagcggaatccattcattgcccccctgtg
tcttttcccatatttcctttctctgcatgtgtctaaagaatgagatcaag
cagcgcctgaataccatgaaggaaggcggggagagagcatggcaatatta
gcaatagcaatcccacattatccacatttgctcatcttttccttccccct
ccctctgtgcttaccctcagTCTGGAACTGGAAGATCAAGAAACGCCTGG
CCACCATGGAGGAAGAAGGGAACAAACTGAAAAACCAAAATCAAGGCGGC
AGCAGCAGCAGCAGCAGCGGTAACGGCGGCGAAGGTTTTGGACCGTTGCC
GGGAGAGAAGGTGATTGCCTTGGATGAGAATCTCCCGGACGGGGCTCTTG
AAGCCTACTGGGCGGAGTTAAGGAGGGAGAGGGAGGTCCAACGAGGAGGT
GGAGGGGAAGGGGGGGGGAAGAGAAGGAGAAGAGCGGGAAGGCGAAGCGG
AGTACGATCAAGgtatgggagtggatggaggaaggcagggagagagggga
gggaaggagggaagatggacgcagaggcggagaagggtattaagccctcg
tatgcagtaactcgtgaagtgacatatgagggtgcgcttcttgagccgag
tgaagctcggggttggaaaggaggagtgatggggttagagaaagagggag
gaatattcggtgtacgtattcattcacaggctccttcattgggattaaaa
ttctttggtggtcgctcatgtttcagctttctcctcttcaaactcccata
tgtaccacagAGACACCTATTGTTCGGATGGAATTATGCACCCAAGAAGA
ACAAAGGAGGAGCAGGATCAGGAGAAGAAAAAGCAGCGGCAGGAGGAAAG
AGAGGCGCCCTATTTCCGACCAAGGCTCCAGCACCAGGACCAGCAGCAAC
AGCAGCAGCAATGGCAAGCACTGCGGGGAAATAGAAATGATGCCGGAGGG
AAGGAAGGGCGGGGATCATTCGATCTGTGGGGGGCTCGGACGgtacgcgt
ggaaacctgcgggttaacatggcatgactaataagcagacgcgattaaaa
tttttgctcgaagtagctgatggcttctgctttgccatcgcttagattat
taccattttttttatttttttttcatttctttcacctattgacctaaccg
tataagGAGGCGGAGGAGGAGGAGGGGGCGGAGGCGGTGGAAGCAGAGGA
GAAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGAGGAGGACGAGGACGAGG
CAGAGGAGGAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTTT
GTTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGACGGCAATGGGGCA
CGTAACATCCTACAGGTGTACAGGAGTATGGTCCGTGGGAAGGTTCGTCC
CCATGATCTTCGGTTTGGTCAACCGCGGCAAGATATGCGGGCACTCTATG
TGTAGCATTCCCGCTGACCTCCTCTTTTATCCTCCTCCCCCTTCTCCTCC
TTGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGATCGAAAAACCTGTCA
AGGTCGCTAGTAAAACTCGGACCAAAAATAAGGGATGA
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protein sequence of NO10G00970.1

>NO10G00970.1-protein ID=NO10G00970.1-protein|Name=NO10G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MSAGVRRRHHLPVTLPHSVSQAQSSKWQVPSEPNRTLEIIHMPQGDLVMH
ALTSTIPALGVRRNLAQHLLKKRPLLMGGGGGAGGDSGLLHNSHSFHSSA
PSLGGGTPGEWNHVWNWKIKKRLATMEEEGNKLKNQNQGGSSSSSSGNGG
EGFGPLPGEKVIALDENLPDGALEAYWAELRREREVQRGGGGEGGGKRRR
RAGRRSGVRSRDTYCSDGIMHPRRTKEEQDQEKKKQRQEEREAPYFRPRL
QHQDQQQQQQQWQALRGNRNDAGGKEGRGSFDLWGARTEAEEEEGAEAVE
AEEKEAEAEEAEAEEDEDEAEEEAEEEVMGGPSEDFVGVTPVNSSCLGTA
MGHVTSYRCTGVWSVGRFVPMIFGLVNRGKICGHSMCSIPADLLFYPPPP
SPPCPVWAVRGLCLIEKPVKVASKTRTKNKG*
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Synonyms
Publications