NO10G00780, NO10G00780 (gene) Nannochloropsis oceanica

Overview
NameNO10G00780
Unique NameNO10G00780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2446
Alignment locationchr10:256678..259123 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:256678..259123 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G00780 vs. NCBI_GenBank
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 120.9 bits (302), Expect = 1.500e-23
Identity = 80/279 (28.67%), Postives = 118/279 (42.29%), Query Frame = 0 
Query:  406 RSQIMTFGKALGEPRYRTTSAWQEGLSMVYEITDAMDNRRLFYGTGPIHVAVGQN---VILRLAGPQRHEVSEPFSAADRDPGLERFGSVRDFFKGCHGGQ--YPTNLRVRVVICDHRTGRMALLYHSGKTAKRHAKVPNASYWQDFLPEESLYIWDPDAVFF---GTEGQVKLAXXXXXXXXXXXXXXXXXXXXXXASDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQKMYRVAGGDTERYASHSSFVSLDFTTTDGEAVGRFIKGLL 677
            R   + + + L  P       W   + + +EI D  D+ RLF  +GP+ V          LRL G +R EV  PFSA  RDP  +RF ++  +   CH  +  +P  LRVRVV  D RTG  AL+Y+S    KR  K    ++W+ FLP  SL++W+  + +    GT+  V+++                      AS  G                                     + + + GGD   YA+H+SFV++ F T D     R+IKG L
Sbjct:  318 RQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFENISAYL--CHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQEAVEIS-------TSFYVSPVQKSPVSSASSTGSAEEREDGWMHFPSATGTSRQRAL------------DQPHVIMGGDETAYANHNSFVAVQFRTLDASVPARYIKGAL 575
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BLAST of NO10G00780 vs. NCBI_GenBank
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 110.5 bits (275), Expect = 2.000e-20
Identity = 63/154 (40.91%), Postives = 85/154 (55.19%), Query Frame = 0 
Query:  404 DCRSQIMTFGKALGEPRYRTTSAWQEGLSMVYEITDAMDNRRLFYGTGPIHVAVGQN---VILRLAGPQRHEVSEP-FSAADRDPGLERFGSVRDFFKGCHGGQYPTNLRVRVVICDHRTGRMALLYHSGKTAKRHAKVPNASYWQDFLPEESL 554
            D R  ++ +G  L   R     A ++G S+ +E+ DAMD  R+   +GPI V + Q      LR+ G  R EV  P FSAA RDP   RF S+ D+F   H  ++   L VRV + D RTGRMALL+ + K A    + P A YW+ FLPE S+
Sbjct:  259 DFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLA-YWEPFLPEGSI 411
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BLAST of NO10G00780 vs. NCBI_GenBank
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 1.300e-14
Identity = 48/132 (36.36%), Postives = 70/132 (53.03%), Query Frame = 0 
Query:  406 RSQIMTFGKALGEPRYRTTSAWQEGLSMVYEITDAMDNRRLFYGTGPIH---VAVGQNVILRLAGPQRHEVSEPFSAADRDPGLERFGSVRDFFKGCHGGQYPTNLRVRVVICDHRTGRMALLYHSGKTAKR 535
            R  ++ FG+ L +   R    W EG+++ +++ D  D  RLF  TGPI      +     ++L G +R  V+ PFSAA RD GL    S+ + F+      YP +  +RV   D RTG+MALL+ S K  KR
Sbjct:  343 RKYLIQFGRCLFDRPIR-QGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKR 472
The following BLAST results are available for this feature:
BLAST of NO10G00780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22815.11.500e-2328.67hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
EWM22694.12.000e-2040.91hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
XP_005853741.11.300e-1436.36hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000938NSK000938Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00780.1NO10G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00780.1NO10G00780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00780 ID=NO10G00780|Name=NO10G00780|organism=Nannochloropsis oceanica|type=gene|length=2446bp
ATGAATAACGAGGAGATGAAAACGAATGCCACCAGCAGCCCGGCAGTAAT
CAGCAGCATCGGTAGCAACCATGTCAGCAGCAGTGTAGCGGCCGCCGCCA
AATCTGCGGCCGCCATGGTAGCGACATCGAAAGCCTTGGCTGCTCGAGAG
gtgagggaatgatggaggagggggagggatggaggggcagagggccaagc
tcaaaacatgtttgtgtcagcatgatatcccagattacatgtttggatgt
tactttgtccggcactcattttctgcctctacttttttttctggaccaac
aaaacagCTCTTGCGCCTAGCTCAGCAGATTGTTGCGGGAAGCGGCACGG
AGCTCCGAGCACTGCTGGAGGAGGAAACGCGGGCCTACGACAACAGCAGC
AGTAGCAACAGTAGCAACAGTAGCGGCAGTACATGTTCCAGCAGGAGCAG
CACTCCTACCTGCAGCAGCAGCAGTGGCAGCGACAGTACCAGCGGCGGTT
GCTCGGCTGAGATTGATGGGCTTGTAAACTCGCTTTGTGGCTTGCTGGTC
GAGCCAGGGGAAGGTGGAGGGGGAGAAGAAGGAGATGGAACTGGAGGAGA
TATTCGAATGGGTGGCGAGAAAGACTTAATGACGACGATGACGGCCATGG
ACAGTGGTAATTGCATGCCTTCTCTCTCGTCTTCGTGCCATCAAACGCAT
CGTCCGGCTGGCGGAAACGGGATAGAGATGAAGGCCCAGGAGGGAAGAGG
ATCCGAATACTGTTCCTTCCCTCCCCTCATCTTCCCGCGCAGCTGCAGTC
ATCATAGCAGCAGGTTTAGGGGTCTGATTCCAGGTCCCGCGGGAGATGGA
GGGGGAGGGCTCTGCAGTAGCGGCAGCGTCTACAGCTGTAGTGCAGTGCC
GACGATGGCGATGACAGGAGTAAGGGGGGAAGGAGGGGGATTAAGCGCAG
AATCGGTGGTGCTGCACGATAGTGCCTTAATGCAAGAGgtgtggcactat
gtggtggaggggagggcgggagggagagttcaattgggagtcctggcgtt
ggtgagcaagggttggaaagaaatggcggcaagtgatgccttctggcggc
cgatcagCATCGACTTGTTTCCGGCTTTGCCTGGAGCGGGGGTTGCGTGG
TTGGGGGGGGGGGGGGTGAAAAGGGGGGAGGAGGAGGAAGGTGGGGAGGC
GGAGGGGCGGCGGGATGGGTGGGGTTCCGGGCGGGAGCGTTGCAGGGGGG
GGAAGGGATGGGTGTGTTGCCGTCGTCACAGTGGTTGTCGCAGTTGGAGG
AGAGGACTACCAGTAGTAATGGTACCGATTATACTTCCCCCTTGTCCCCT
TCTTCTCCGGCGTCTGCCTCTTCTTCCTTCTTGTCCCACGCCGCCCGTGC
TCCTGCTGCTGCTACTACAGCTGCTGCCGCAGCGGCGGCGGCTGCAGCGA
GTCCGTCTGCAGCCTCCACCGCCTTCCTCCGCGTCGATTGTCGCTCCCAA
ATCATGACGTTCGGGAAAGCTTTGGGTGAGCCTCGCTATCGCACGACCAG
TGCTTGGCAAGAGGGCTTGAGCATGGTGTACGAGATCACCGACGCGATGG
ACAACCGTCGCTTGTTCTATGGAACTGGCCCCATCCATGTGGCGGTTGGT
CAGAACGTCATCTTGCGTCTTGCGGGGCCTCAACGTCACGAAGTGAGCGA
GCCTTTCTCTGCTGCCGACCGTGATCCAGGCCTGGAGAGGTTTGGAAGTG
TGAGGGATTTTTTCAAGGGGTGTCATGGAGGGCAATACCCGACAAACCTG
CGTGTGAGGGTGGTGATTTGCGACCACCGGACGGGACGTATGGCACTGCT
TTATCACTCGGGAAAGACGGCGAAACGACACGCCAAGgtacgtctttctt
ccccttccgtctttccaactctccctccctccctccctcctttcatcgtg
cacacgtcatatgccacatatacttattcacctacctttcctttcccccc
tccctccctccctgcctcagGTACCCAACGCCTCCTATTGGCAAGACTTT
CTCCCGGAAGAGTCTCTCTATATCTGGGATCCAGACGCGGTGTTCTTCGG
GACTGAGGGGCAGGTTAAATTAGCAGCGGCCTTCTACGTGGTAGCATGCG
ATGATAGCGGCGCTGCTGCTCCACCAGGAGGAGGAGGAGAAGCATCAGAT
GCAGGTGTAGACGCAGGAGCGGTTGGAGGGGAGGAACAAGGGGTGGAAGG
AGGGGTGGAAGGAGGGATGGAAGGAGGGGTGGAGGGAGGGGTGGAAGGTG
GGGTGGAGGAGAAGCAGAAGATGTACCGGGTCGCGGGCGGGGATACTGAG
CGGTATGCAAGTCATTCGTCATTCGTGAGTTTAGATTTCACCACCACAGA
TGGGGAGGCAGTGGGACGATTCATCAAGGGCTTATTGGCGCCGTAG
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protein sequence of NO10G00780.1

>NO10G00780.1-protein ID=NO10G00780.1-protein|Name=NO10G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=679bp
MNNEEMKTNATSSPAVISSIGSNHVSSSVAAAAKSAAAMVATSKALAARE
LLRLAQQIVAGSGTELRALLEEETRAYDNSSSSNSSNSSGSTCSSRSSTP
TCSSSSGSDSTSGGCSAEIDGLVNSLCGLLVEPGEGGGGEEGDGTGGDIR
MGGEKDLMTTMTAMDSGNCMPSLSSSCHQTHRPAGGNGIEMKAQEGRGSE
YCSFPPLIFPRSCSHHSSRFRGLIPGPAGDGGGGLCSSGSVYSCSAVPTM
AMTGVRGEGGGLSAESVVLHDSALMQEHRLVSGFAWSGGCVVGGGGGEKG
GGGGRWGGGGAAGWVGFRAGALQGGEGMGVLPSSQWLSQLEERTTSSNGT
DYTSPLSPSSPASASSSFLSHAARAPAAATTAAAAAAAAAASPSAASTAF
LRVDCRSQIMTFGKALGEPRYRTTSAWQEGLSMVYEITDAMDNRRLFYGT
GPIHVAVGQNVILRLAGPQRHEVSEPFSAADRDPGLERFGSVRDFFKGCH
GGQYPTNLRVRVVICDHRTGRMALLYHSGKTAKRHAKVPNASYWQDFLPE
ESLYIWDPDAVFFGTEGQVKLAAAFYVVACDDSGAAAPPGGGGEASDAGV
DAGAVGGEEQGVEGGVEGGMEGGVEGGVEGGVEEKQKMYRVAGGDTERYA
SHSSFVSLDFTTTDGEAVGRFIKGLLAP*
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Synonyms
Publications