NO10G00690.1, NO10G00690.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00690.1
Unique Name	NO10G00690.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1707
Alignment location	chr10:227608..230531 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:227608..230531 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO10G00690.1 vs.
Match: EWM25299.1 (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 218.4 bits (555), Expect = 5.700e-53
Identity = 117/247 (47.37%), Postives = 160/247 (64.78%), Query Frame = 0

Query:   54 DKRHQVPGEILVKLEAAANALPFALFCDKLEMLERKKASGHSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQ----DYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAAL 297
            D R     E LVKLEAAAN+LPFA FCDK E   + K S   KR  FFD +L   L++AS GPVS++PI++FLLPE D RQGQ+KL  +T+G+ +VK LGL+  S AA RI N +  +             +  GDF + +E VL +RI+  PS L+L E++  L+++         K K  ER +IF+ L+  +NPRE+KWL+R++LGD+K G K D+VLKVFG+DGP RL+  +DLR +CAE A+
Sbjct:   51 DTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAK-SAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAV 296

The following BLAST results are available for this feature:

BLAST of NO10G00690.1 vs.

BLAST of NO10G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25299.1	5.700e-53	47.37	dna ligase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00690	NO10G00690	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00690.1	NO10G00690.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00690.1.cds1	NO10G00690.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00690.1.cds2	NO10G00690.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00690.1.cds3	NO10G00690.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00690.1.cds4	NO10G00690.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00690.1.cds5	NO10G00690.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00690.1.cds6	NO10G00690.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:227608..230531-
coding sequence from alignment at chr10:227608..230531-

mRNA sequence

>NO10G00690.1 ID=NO10G00690.1|Name=NO10G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
ATGCCACCGCCGCCGGTTCGGGATGTGGACTACGACGACTCGAGTTCCCC
GCTCAAGCAGGCCGTGATGCAGCAGCAGGAGCAGCAACAGGGTCACGATG
GTCATACCCTACCATGCGATACATTTACCATTGGACGCGACACCCTTTTG
CGCCAGCAAGACAAGCGGCATCAGGTCCCAGGCGAGATCTTGGTGAAGCT
GGAAGCAGCTGCGAATGCCCTGCCCTTTGCCCTCTTCTGCGACAAGCTTG
AGATGCTTGAAAGGAAGAAGGCCAGCGGTCATTCAAAACGCCGGTGGTTC
TTTGATTCCCAGCTGTGCAACTGGCTCAAGAAGGCATCGGACGGGCCTGT
GTCGCTCTATCCGATCATTAAGTTTTTGCTGCCGGAGAAAGACGCGCGCC
AAGGGCAGTACAAGTTGGGGCCTAAAACCATAGGAGAGGCCCTCGTTAAG
GCTCTTGGACTCAGTGCACATTCCGACGCGGCTCAACGCATCACGAATTT
GGCTGGGGGTGATTTCAAGAGAAGCGCGTATGTTAAACAAGACTACTCGG
GAGATTTTGCGACAAAAGTCGAGTCCGTCTTGACAACACGCATTCAAACG
GAGCCCTCCAAGCTGACGCTCAAGGAGATCGATAGCGTGCTGGAAGAGAT
CGCCCATCCCAAATCAAACGAGGATGGCAAGGCCAAAATGGTTGAGAGGC
TGAAGATCTTCTCTGGGCTCACAGGGCGCATGAATCCCCGAGAATTAAAG
TGGCTGGTGCGCCTCCTTTTGGGAGACATGAAGACAGGGATGAAGAGCGA
TACGGTCCTAAAGGTGTTTGGGGAGGATGGCCCAAGTCGACTGGAGACGG
TGCATGACCTCCGGACATTGTGTGCAGAAGCTGCCTTGAACGTCGACTCC
GATGTCCGCGTTCAGCTCATGACACCCTTCAAGGTCCACGTGTGTGCCCG
GGCCAACTCCGCTAGCGCCGCACTCTCCAAGATGGAGGGCCAGCCGTTTC
TGATGGAGCGGAAGCTGGATGGAGAGCGGTATGTGCTGCATAAAAGGGGA
AACCAGCTTCGATTCTTTTCGCGCAATCTCAAGGACGCACGGCCGGAGTA
CTACACGATCTTAAATGAGATGTTCCTCGCGCGCCTCCAGAGTGTGGAAG
ACCTTATTCTAGACGGGGAGGTGGTGGCGTGGAGCGATAAACTAGGTGAT
TACGAGCGTTTCGGATCCAACAAAACGGTGGCCATTGCCCAAGCGCAGGA
AGCGGCGGCGGGGATAGGTGTGAGGGAGGAAGGGCAGGGGGCGGTGGAGG
GGCGGAACTTGATGTATGTGGTGTTTGACGTGGTGTATGTGGGAGGGAGG
GGAAGCGAGGAGGCGTTTCGTAAGGCAGGGGTTAGGGCGTGTCGGGCGTG
GGAGGTGGGGAAGAAGCCGTTAAGGGAACGACGGGCGCTGTTGTCGGCGA
TTGCAAACACCGAGAAGAAAGTGTTGGAGATTGTGGAACACAGGGAAGTT
GGCGGCAGCAGCAGCAGTAGACCCGGCTTAAGAGGAGGAGGAGGAGGAGG
AGGGGAAGGACGAGGGGGTAGTGTGGAGCAAGAGCGGTTGGAAACCCTGT
CGACTTACTTCGACCATGCCGTGGAGAATGGATGGGAGGGTTTGGTGATC
AAAAAACTCGACAGCACCTACATGGGTCTGGGAGGGCTGGGGGGGAGAAG
GTGGTGA

protein sequence of NO10G00690.1

>NO10G00690.1-protein ID=NO10G00690.1-protein|Name=NO10G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MPPPPVRDVDYDDSSSPLKQAVMQQQEQQQGHDGHTLPCDTFTIGRDTLL
RQQDKRHQVPGEILVKLEAAANALPFALFCDKLEMLERKKASGHSKRRWF
FDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVK
ALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQT
EPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELK
WLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDS
DVRVQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRG
NQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGD
YERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGR
GSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREV
GGSSSSRPGLRGGGGGGGEGRGGSVEQERLETLSTYFDHAVENGWEGLVI
KKLDSTYMGLGGLGGRRW*

mRNA from alignment at chr10:227608..230531-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00690.1 ID=NO10G00690.1|Name=NO10G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2924bp|location=Sequence derived from alignment at chr10:227608..230531- (Nannochloropsis oceanica)
ATGCCACCGCCGCCGGTTCGGGATGTGGACTACGACGACTCGAGTTCCCC
GCTCAAGCAGGCCGTGATGCAGCAGCAGGAGCAGCAACAGGGTCACGATG
GTCATACCCTACCATGCGATACATTTACCATTGGACGCGACACCCTTTTG
CGCCAGCAAGACAAGCGGCATCAGGTCCCAGGCGAGATCTTGGTGAAGCT
GGAAGCAGCTGCGAATGCCCTGCCCTTTGCCCTCTTCTGCGACAAGCTTG
AGATGCTTGAAAGGAAGAAGGCCAGCGGTCATTCAAAACGCCGGTGGTTC
TTTGATTCCCAGCTGTGCAACTGGCTCAAGAAGGCATCGGACGGGCCTGT
GTCGCTCTATCCGATCATTAAGTTTTTGCTGCCGGAGAAAGACGCGCGCC
AAGGGCAGTACAAGTTGGGGCCTAAAACCATAGGAGAGGCCCTCGTTAAG
GCTCTTGGACTCAGTGCACATTCCGACGCGGCTCAACGCATCACGAATTT
GGCTGGGGGTGATTTGTACGTATTGATGCGTGTTTACAGATGTTGCAAAT
ACATGTAGCGGGTTATAAACTCGATGGTCATTTCTATTTTCCCTCACTGT
CCCCCCTCATCTATTGACACTTTCTTCAACCACAGCAAGAGAAGCGCGTA
TGTTAAACAAGACTACTCGGGAGATTTTGCGACAAAAGTCGAGTCCGTCT
TGACAACACGCATTCAAACGGTAGCGTGTCTAGGTTATTGCGGCCATACT
TCCCTCCCTCCTTCCCTCCCTCCTTCCCTTCCCCCCCCCTCGTTACTTTT
CGATGCCTCTGTACTCAAATTATGTTCACCTAGTAAGGGTCCTTCCCCTC
CCCAATCACATTTCCCGTGGCTGGCTCCCTCCCTCTTTCCTTCCCTCCCC
CTTCCCTCTCTCCGTTCATTTAATCCCTTCCGAGGTCTGTGTCGCCCTCT
TTACTCACCTTTTTTCCTTCCTTCCCTTCCTCCCTCCCTCCCTCCCGCCT
GCCTTACCGCCCATCTGCCCACAGGAGCCCTCCAAGCTGACGCTCAAGGA
GATCGATAGCGTGCTGGAAGAGATCGCCCATCCCAAATCAAACGAGGATG
GCAAGGCCAAAATGGTTGAGAGGCTGAAGATCTTCTCTGGGCTCACAGGG
CGCATGAATCCCCGAGAATTAAAGTGGCTGGTAAGAGAGCGAGGAGTTGG
CGTATCGAGGACGAGGGGGTGGGGGAGAGGAGGAGGGGTTCGCATGGTCT
TCCGAGCCCGTCTGATGAGGAAACATCAACTTGACTCGACTTCGTCGGCC
TCCAGTTTTTGTTTTATATATACATTTTTAAGCGATGCATATAATAAGTC
GTTGGGATGGAAGGGGAAGGGCAGGTCTGGAAAGAGAGGCGAAGTGAATT
TGGGTTTTCCAACGGAAAGAGGGAGGTTTCACCAAGCGACCATACACATT
CCTCCCTCCCTCCCTTCCCCCCTCTCTCCTTCGTTTTCTCTTTTTCTCCC
TCCGTGCCGCCTGACAGGTGCGCCTCCTTTTGGGAGACATGAAGACAGGG
ATGAAGAGCGATACGGTCCTAAAGGTGTTTGGGGAGGATGGCCCAAGTCG
ACTGGAGACGGTGCATGACCTCCGGACATTGTGTGCAGAAGCTGCCTTGA
AGTAAGCACGGGAAGGAGGGAGGGAGGGCGGGAGGGAGGGCGGGCGTGGT
ATTCTGATCCAGTCCAGCTGAGGCTATCTTGGAGTAAGAATGGGATGGAA
GGAAGGAGGGAGAGGGGGGGGGGAAGGAGAGGGGAAGGACGAAAGGAAGA
AAGAAGGGCATGTCATCCTGAGTCTAATCGCACTAAACCTCTTTCCCTCC
TTCCCCCCCTTCTTCCCCCTCTCCTCCCTAGCGTCGACTCCGATGTCCGC
GTTCAGCTCATGACACCCTTCAAGGTCCACGTGTGTGCCCGGGCCAACTC
CGCTAGCGCCGCACTCTCCAAGATGGAGGGCCAGCCGTTTCTGATGGAGC
GGAAGCTGGATGGAGAGCGGTATGTGCTGCATAAAAGGGGAAACCAGCTT
CGATTCTTTTCGCGCAATCTCAAGGTATGCAGACGGAGCCCATTTCGGCA
GGGTTACTAAACGCGTGAATAGGAAGGGCAATCGATTCGCTTGCTCCGTT
CCCTCCTTTCTTCTTTCCTTCCGCCTCAGTACAGGTATTCAATGATTTGT
CCCTCCCCCTCTCCTCAGGGTCCACGGCTGGAGTACTATGAAGTGTTGAA
TGACATATTCCTTCATTTCTCCCTACCTCTCTCACTTCCTCCCTCCTCAG
GACGCACGGCCGGAGTACTACACGATCTTAAATGAGATGTTCCTCGCGCG
CCTCCAGAGTGTGGAAGACCTTATTCTAGACGGGGAGGTGGTGGCGTGGA
GCGATAAACTAGGTGATTACGAGCGTTTCGGATCCAACAAAACGGTGGCC
ATTGCCCAAGCGCAGGAAGCGGCGGCGGGGATAGGTGTGAGGGAGGAAGG
GCAGGGGGCGGTGGAGGGGCGGAACTTGATGTATGTGGTGTTTGACGTGG
TGTATGTGGGAGGGAGGGGAAGCGAGGAGGCGTTTCGTAAGGCAGGGGTT
AGGGCGTGTCGGGCGTGGGAGGTGGGGAAGAAGCCGTTAAGGGAACGACG
GGCGCTGTTGTCGGCGATTGCAAACACCGAGAAGAAAGTGTTGGAGATTG
TGGAACACAGGGAAGTTGGCGGCAGCAGCAGCAGTAGACCCGGCTTAAGA
GGAGGAGGAGGAGGAGGAGGGGAAGGACGAGGGGGTAGTGTGGAGCAAGA
GCGGTTGGAAACCCTGTCGACTTACTTCGACCATGCCGTGGAGAATGGAT
GGGAGGGTTTGGTGATCAAAAAACTCGACAGCACCTACATGGGTCTGGGA
GGGCTGGGGGGGAGAAGGTGGTGA

Coding sequence (CDS) from alignment at chr10:227608..230531-

>NO10G00690.1 ID=NO10G00690.1|Name=NO10G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at chr10:227608..230531- (Nannochloropsis oceanica)
ATGCCACCGCCGCCGGTTCGGGATGTGGACTACGACGACTCGAGTTCCCC
GCTCAAGCAGGCCGTGATGCAGCAGCAGGAGCAGCAACAGGGTCACGATG
GTCATACCCTACCATGCGATACATTTACCATTGGACGCGACACCCTTTTG
CGCCAGCAAGACAAGCGGCATCAGGTCCCAGGCGAGATCTTGGTGAAGCT
GGAAGCAGCTGCGAATGCCCTGCCCTTTGCCCTCTTCTGCGACAAGCTTG
AGATGCTTGAAAGGAAGAAGGCCAGCGGTCATTCAAAACGCCGGTGGTTC
TTTGATTCCCAGCTGTGCAACTGGCTCAAGAAGGCATCGGACGGGCCTGT
GTCGCTCTATCCGATCATTAAGTTTTTGCTGCCGGAGAAAGACGCGCGCC
AAGGGCAGTACAAGTTGGGGCCTAAAACCATAGGAGAGGCCCTCGTTAAG
GCTCTTGGACTCAGTGCACATTCCGACGCGGCTCAACGCATCACGAATTT
GGCTGGGGGTGATTTCAAGAGAAGCGCGTATGTTAAACAAGACTACTCGG
GAGATTTTGCGACAAAAGTCGAGTCCGTCTTGACAACACGCATTCAAACG
GAGCCCTCCAAGCTGACGCTCAAGGAGATCGATAGCGTGCTGGAAGAGAT
CGCCCATCCCAAATCAAACGAGGATGGCAAGGCCAAAATGGTTGAGAGGC
TGAAGATCTTCTCTGGGCTCACAGGGCGCATGAATCCCCGAGAATTAAAG
TGGCTGGTGCGCCTCCTTTTGGGAGACATGAAGACAGGGATGAAGAGCGA
TACGGTCCTAAAGGTGTTTGGGGAGGATGGCCCAAGTCGACTGGAGACGG
TGCATGACCTCCGGACATTGTGTGCAGAAGCTGCCTTGAACGTCGACTCC
GATGTCCGCGTTCAGCTCATGACACCCTTCAAGGTCCACGTGTGTGCCCG
GGCCAACTCCGCTAGCGCCGCACTCTCCAAGATGGAGGGCCAGCCGTTTC
TGATGGAGCGGAAGCTGGATGGAGAGCGGTATGTGCTGCATAAAAGGGGA
AACCAGCTTCGATTCTTTTCGCGCAATCTCAAGGACGCACGGCCGGAGTA
CTACACGATCTTAAATGAGATGTTCCTCGCGCGCCTCCAGAGTGTGGAAG
ACCTTATTCTAGACGGGGAGGTGGTGGCGTGGAGCGATAAACTAGGTGAT
TACGAGCGTTTCGGATCCAACAAAACGGTGGCCATTGCCCAAGCGCAGGA
AGCGGCGGCGGGGATAGGTGTGAGGGAGGAAGGGCAGGGGGCGGTGGAGG
GGCGGAACTTGATGTATGTGGTGTTTGACGTGGTGTATGTGGGAGGGAGG
GGAAGCGAGGAGGCGTTTCGTAAGGCAGGGGTTAGGGCGTGTCGGGCGTG
GGAGGTGGGGAAGAAGCCGTTAAGGGAACGACGGGCGCTGTTGTCGGCGA
TTGCAAACACCGAGAAGAAAGTGTTGGAGATTGTGGAACACAGGGAAGTT
GGCGGCAGCAGCAGCAGTAGACCCGGCTTAAGAGGAGGAGGAGGAGGAGG
AGGGGAAGGACGAGGGGGTAGTGTGGAGCAAGAGCGGTTGGAAACCCTGT
CGACTTACTTCGACCATGCCGTGGAGAATGGATGGGAGGGTTTGGTGATC
AAAAAACTCGACAGCACCTACATGGGTCTGGGAGGGCTGGGGGGGAGAAG
GTGGTGA

Synonyms

Publications