NO10G00690, NO10G00690 (gene) Nannochloropsis oceanica

Overview
NameNO10G00690
Unique NameNO10G00690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2924
Alignment locationchr10:227608..230531 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna ligase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:227608..230531 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0051103DNA ligation involved in DNA repair
GO:0006281DNA repair
GO:0006310DNA recombination
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003677DNA binding
GO:0003910DNA ligase (ATP) activity
Vocabulary: INTERPRO
TermDefinition
IPR036599DNA_ligase_N_sf
IPR029710LIG4
IPR012310DNA_ligase_ATP-dep_cent
IPR012308DNA_ligase_ATP-dep_N
Homology
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: EWM25299.1 (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 218.4 bits (555), Expect = 5.700e-53
Identity = 117/247 (47.37%), Postives = 160/247 (64.78%), Query Frame = 0 
Query:   54 DKRHQVPGEILVKLEAAANALPFALFCDKLEMLERKKASGHSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQ----DYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAAL 297
            D R     E LVKLEAAAN+LPFA FCDK E   + K S   KR  FFD +L   L++AS GPVS++PI++FLLPE D RQGQ+KL  +T+G+ +VK LGL+  S AA RI N +  +             +  GDF + +E VL +RI+  PS L+L E++  L+++         K K  ER +IF+ L+  +NPRE+KWL+R++LGD+K G K D+VLKVFG+DGP RL+  +DLR +CAE A+
Sbjct:   51 DTRQDFTEEALVKLEAAANSLPFAHFCDKCEKAAQAK-SAQKKRSIFFDKELIYRLQRASPGPVSIFPILRFLLPETDPRQGQFKLRHRTMGDVIVKTLGLATKSKAALRIMNFSMPEHNGPRMGPNGRILNTLGDFGSTIEDVLVSRIRQTPSDLSLLEVNEWLDKLVSAPPRSHAKRKEREREEIFTQLSTLLNPREMKWLIRIILGDLKCGFKKDSVLKVFGQDGPGRLQRSYDLRKVCAEYAV 296
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_008613164.1 (hypothetical protein SDRG_09031 [Saprolegnia diclina VS20] >EQC33524.1 hypothetical protein SDRG_09031 [Saprolegnia diclina VS20])

HSP 1 Score: 171.8 bits (434), Expect = 6.200e-39
Identity = 147/508 (28.94%), Postives = 229/508 (45.08%), Query Frame = 0 
Query:   71 ANALPFALFCDKLEMLERKKASGHSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR-VQLMTPFKVH--VCARANSASAALSKMEGQPFLMERKLDGERYVLHKR-----GNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKAGVR-ACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTYM-GLGGLGGRRW 569
            A  LPF  FC  LE +     S  +K +  F ++L     +A+ G  S+YP+++ LLP  D R   YKL  K +    V+ LG+SA+S   + + +        +  V     GDF++ V+ V+  R +   + +TL +++ +L+ +    + +     M E+ ++   +  R +  E KWLVR++L D+K G++ + VL     D P      +DL  +C E     DS VR V  +TP +V   + A+  S       M+   F ME KLDGER   H +     G   +  +RN  +   +Y   +     A++ +  D ILDGE++ W      YE FGS KTVAI QA             QG   G+ L YVV+D+VY GG G+    +KA    A  +  +   PL  R ++L A+       +E +E   V                          Q R E +    D  +  G+EG+++K   S YM G  G   +RW
Sbjct:    2 AGTLPFGSFCALLERVASTNKS-EAKLKLIFSAEL-----RAACGGGSVYPLLRLLLPHLD-RDRTYKLKEKKLAALYVELLGISANSGDGKMLLHWTDPTIVTTRAV-----GDFSSVVQQVMQYRAKPCDASVTLNDVNGLLDALNRVHTVD----AMTEKKRVLRQMLTRFSGEEQKWLVRMILKDLKIGLRHERVLAFIHPDAPEMFNHTNDLARVCDEL---TDSRVRYVPAITPGQVFTPMLAKRVSFGECTQAMQSNAFYMEPKLDGERITCHVQRTACGGRSTQLITRNGTNYTDKYGPAIASYIEAQVHAAYDCILDGEMLVWDSVAFKYESFGSLKTVAIEQA-------------QGKNPGQWLCYVVWDIVYCGGDGAAALIQKACPNVASTSTNIMGLPLSARLSVLDAVLTPLTHRVERIEQVLVPASMP--------------------AQARHERVMAEVDARLLAGYEGVILKDATSHYMCGEVGRKSQRW 457
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_012205277.1 (hypothetical protein SPRG_10651 [Saprolegnia parasitica CBS 223.65] >KDO23955.1 hypothetical protein SPRG_10651 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 171.4 bits (433), Expect = 8.100e-39
Identity = 147/509 (28.88%), Postives = 229/509 (44.99%), Query Frame = 0 
Query:   71 ANALPFALFCDKLEMLERKKASGHSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR-VQLMTPFKVH--VCARANSASAALSKMEGQPFLMERKLDGERYVLHKR-----GNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKA--GVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTYM-GLGGLGGRRW 569
            A  LPF  FC  LE +     S  +K +  F ++L     +A+ G  S+YP+++ LLP  D R   YKL  K +    V+ LG+SA S   +++ +        +  V     GDF++ +E V+  R +   + +T+++++ +L+ +      +     M E+ ++   +  R +  E KWLVR++L D+K G++ + VL     D P      +DL  +C E     DS VR V  +TP +V   + A+          M+   F ME KLDGER   H +     G   +  +RN  +   +Y   +     A++ +  D ILDGE++ W      YE FGS KTVAI QA             QG   G+ L YVV+D+VY GG G+    +KA   V A  +  +   PL  R ++L AI       +E +E   V                          Q R E +    D  +  G+EG+++K   S YM G  G   +RW
Sbjct:    2 AGTLPFGSFCALLERVASTTKS-EAKLKLIFSTEL-----RAACGDGSVYPLLRLLLPHLD-RDRTYKLKEKKLAALYVELLGISASSGDGKKLLHWTDPTIVTTRAV-----GDFSSVLEEVMQYRAKPCDASVTIEDVNGLLDALNKVHMVD----AMAEKKRVLRQMLTRFSGNEQKWLVRMILKDLKIGLRHERVLAFIHPDAPEMFNHTNDLARVCDEL---TDSRVRYVPAITPGQVFTPMLAKRVPFGECTQAMQSNAFYMEPKLDGERITCHVQRTASGGRSTQLVTRNGTNYTDKYGPAIASYIEAQVHAAYDCILDGEMLVWDSVAFKYESFGSLKTVAIEQA-------------QGKNPGQWLCYVVWDIVYCGGDGAMALIQKACPNVVASTSTNIMGLPLSARLSVLDAILTPLAHRVERIEQVLVTASMP--------------------AQARHERVMAEVDARLLAGYEGVILKDATSHYMCGEAGRKSQRW 458
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_020103399.1 (DNA ligase 4 [Ananas comosus])

HSP 1 Score: 166.8 bits (421), Expect = 2.000e-37
Identity = 128/491 (26.07%), Postives = 213/491 (43.38%), Query Frame = 0 
Query:   76 FALFCDKLEMLERKKASGHSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR--VQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRGNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIV-------EHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTY 558
            F L     + + R +++   +RR      L  +L +   G    +  ++ +LP  D  +G Y L    +  ALV ALGL+  S  A R+ N   G   R+       +G+FA     VL  R       LT+KE++  L+++A  ++         E+  I SGL  + N  E+KW++ ++L D+K G+   ++   F  D         DL+ +C +         R  +++  P +  +  R + ASAA  K+ G+  ++E K DG+R  +HK G ++ FFSRN  D  PEY   ++++ +  +  V+  ILDGE++ W      +  FGSN+ +A A               +G    R L Y+ FD++Y G                    V  + L ER+ LL  +    K  L+I+       +HR  G                      S+    +E +  +F   +EN  EG+V+K LDS +
Sbjct:    8 FGLLVSMFQAMLRDRSAAKKRRR------LRTFLDRVYTGR-DYFSAMRLVLPALDRERGSYGLKESALAAALVDALGLARDSPDALRLVNWRRGGASRAG----ANAGNFALVAAEVLQRRQGMTSGGLTIKELNDALDQLAATENR-------AEKASILSGLIKKTNALEMKWILMIILKDLKLGISEKSIFHEFHPDAEELFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVRPQLAMRVSDASAAWKKLHGKNVIVECKFDGDRIQIHKNGEEIHFFSRNFLD-HPEYAPGMSKIIMQNI-LVDRCILDGEMLVWDTSTNRFAEFGSNQEIAKAAR-------------EGMESDRQLCYIAFDILYAGDT-----------------SVIHQSLAERQELLQKVVKPLKGQLDILIPNGGLNDHRPQG------------------EPCWSIIAHNVEDVEKFFKETIENRDEGIVLKDLDSKW 430
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_023546649.1 (DNA ligase 4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 2.000e-37
Identity = 129/488 (26.43%), Postives = 214/488 (43.85%), Query Frame = 0 
Query:   74 LPFALFCDKLEMLERKKASG--HSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR--VQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRGNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTY 558
            + F++     + ++R K+S    SK R F D+  C+        P   +  I+ +LP  D  +G Y L    +   L+ ALG+S  S+ A R+ N   G  K  A V     G+FA     VL  R    P  L +KE++ +L+ +A  ++         E+  + S L  + N +E+KW+V ++L D+K G+   ++   F  D         DL+ +C +         R  +++    +  + +R ++A+AA  K+ G+  ++E K DG+R  +HK G ++ +FSRN  D   EY   ++++ +  + +    ILDGE++ W   L  +  FGSN+ +A             R    G    R L YV FDV+YVG                    V  + L+ER  LL  +    K  LEI+     GG                     S+    ++ +  +F   +EN  EG+VIK L S +
Sbjct:    5 IKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDT-FCS--------PADYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANV-----GNFALVAAEVLQRRQGMTPGGLLIKELNDLLDRLALTENR-------AEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLD-HSEYGHGMSDVIVQNVLATR-CILDGEMLVWDKSLNRFAEFGSNQEIA-------------RAAKDGFDSNRQLCYVAFDVLYVGDT-----------------SVIHRSLKERHELLRGVVKPVKGQLEILVPN--GG----------LNSDCAGDPSWSIRAYNVDDVERFFKSTIENRDEGIVIKDLSSKW 427
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_023546648.1 (DNA ligase 4 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 2.000e-37
Identity = 129/488 (26.43%), Postives = 214/488 (43.85%), Query Frame = 0 
Query:   74 LPFALFCDKLEMLERKKASG--HSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR--VQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRGNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTY 558
            + F++     + ++R K+S    SK R F D+  C+        P   +  I+ +LP  D  +G Y L    +   L+ ALG+S  S+ A R+ N   G  K  A V     G+FA     VL  R    P  L +KE++ +L+ +A  ++         E+  + S L  + N +E+KW+V ++L D+K G+   ++   F  D         DL+ +C +         R  +++    +  + +R ++A+AA  K+ G+  ++E K DG+R  +HK G ++ +FSRN  D   EY   ++++ +  + +    ILDGE++ W   L  +  FGSN+ +A             R    G    R L YV FDV+YVG                    V  + L+ER  LL  +    K  LEI+     GG                     S+    ++ +  +F   +EN  EG+VIK L S +
Sbjct:    5 IKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDT-FCS--------PADYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANV-----GNFALVAAEVLQRRQGMTPGGLLIKELNDLLDRLALTENR-------AEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLD-HSEYGHGMSDVIVQNVLATR-CILDGEMLVWDKSLNRFAEFGSNQEIA-------------RAAKDGFDSNRQLCYVAFDVLYVGDT-----------------SVIHRSLKERHELLRGVVKPVKGQLEILVPN--GG----------LNSDCAGDPSWSIRAYNVDDVERFFKSTIENRDEGIVIKDLSSKW 427
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_020526887.1 (DNA ligase 4 [Amborella trichopoda])

HSP 1 Score: 166.4 bits (420), Expect = 2.600e-37
Identity = 130/486 (26.75%), Postives = 210/486 (43.21%), Query Frame = 0 
Query:   76 FALFCDKLEMLERKKASGHSKR--RWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR--VQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRGNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTY 558
            F++ C   + L R K+S   ++  R F D      + K+ +     +  I+ +LP  D  +G Y L    +   L+ ALG+S  S+ A R+ N   G  K         +G+FA     VL  R       LT+KE++ +L+ +A  ++ E       ++  + S L  + N  E+KW+V ++L D+K G+   ++ + F  D         DL+ +C +       + R  ++     +  +  R   AS+A  K+ G+  ++E K DG+R  +HK GN+L FFSRN  D  PEY   ++ + L  +  VE  ILDGE++ W      +  FGSN+ +A             +    G    R L YV FD++YVG                    V  + LRER  LL  +    K  LEI+                            S+    +E +  +F   +EN  EG+V+K LDS +
Sbjct:    8 FSVLCSMFQALARNKSSVMKRKHFRTFLDH-----VYKSKE----YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGISRESEDALRLINWRKGGAKTG-----PNAGNFALVAAEVLQRRQGMTSGGLTIKEVNDLLDRLAAAENRE-------QKTSVLSELIKKTNSVEMKWIVMIILKDLKLGISEKSIFREFHTDAEDLFNVTCDLKLVCEKLKDRTQRNKRQDIEAGKAVRPQLAMRVADASSAWKKLHGKQVVIECKFDGDRIQIHKNGNELCFFSRNFID-HPEYGHAMSSLILQNV-LVERCILDGEMLVWDTSTNRFAEFGSNQEIA-------------KASNDGIEGDRQLCYVAFDILYVGDT-----------------SVIHQSLRERHELLRKVVQPVKGRLEIL-----------VPDGGLNVRRPSDEPCWSLIAYSVEDVEKFFKETIENRDEGIVLKDLDSKW 429
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_008451168.1 (PREDICTED: DNA ligase 4 isoform X1 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 3.400e-37
Identity = 128/488 (26.23%), Postives = 212/488 (43.44%), Query Frame = 0 
Query:   74 LPFALFCDKLEMLERKKASG--HSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR--VQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRGNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTY 558
            + FA+     + ++R K+S    SK R F D+  C+        P   +  I+ +LP  D  +G Y L    +   L+ ALG+S  SD A R+ N   G  K  A      +G+FA     VL  R    P  LT+ E++ +L+ +A  ++         E+  + S L  + N +E+KW+V ++L D+K G+   ++   F  D         DL+ +C +         R  +++    +  + +R ++A+AA  K+ G+  + E K DG+R  +HK G ++ +FSRN  D   EY   ++++ +  + S    ILDGE++ W   L  +  FGSN+ +A             R    G    R L YV FDV+YVG                    V  + L+ER  LL  +    K  LE++   +                        S+    ++ +  +F   +EN  EG+VIK L S +
Sbjct:    5 IKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDT-FCS--------PSHYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRDSDDALRLINWRKGGAKTGA-----NAGNFALVAAEVLQRRQGMTPGGLTINELNDLLDRLASGENR-------AEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWKKLHGKEVVAECKFDGDRIQIHKNGTEVHYFSRNFLD-HSEYGHGMSDVIVQNVLSTR-CILDGEMLVWDKSLNRFAEFGSNQEIA-------------RAAKDGFDSNRQLCYVAFDVLYVGDT-----------------SVIHRSLKERHELLRNVVKPVKGQLEVLVPND-------------GLNSDCAGCPWSIRAYNVDDVERFFKSTIENRDEGIVIKDLGSKW 426
[Close]
BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_008451172.1 (PREDICTED: DNA ligase 4 isoform X2 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 3.400e-37
Identity = 128/488 (26.23%), Postives = 212/488 (43.44%), Query Frame = 0 
Query:   74 LPFALFCDKLEMLERKKASG--HSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR--VQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRGNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTY 558
            + FA+     + ++R K+S    SK R F D+  C+        P   +  I+ +LP  D  +G Y L    +   L+ ALG+S  SD A R+ N   G  K  A      +G+FA     VL  R    P  LT+ E++ +L+ +A  ++         E+  + S L  + N +E+KW+V ++L D+K G+   ++   F  D         DL+ +C +         R  +++    +  + +R ++A+AA  K+ G+  + E K DG+R  +HK G ++ +FSRN  D   EY   ++++ +  + S    ILDGE++ W   L  +  FGSN+ +A             R    G    R L YV FDV+YVG                    V  + L+ER  LL  +    K  LE++   +                        S+    ++ +  +F   +EN  EG+VIK L S +
Sbjct:    5 IKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDT-FCS--------PSHYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRDSDDALRLINWRKGGAKTGA-----NAGNFALVAAEVLQRRQGMTPGGLTINELNDLLDRLASGENR-------AEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWKKLHGKEVVAECKFDGDRIQIHKNGTEVHYFSRNFLD-HSEYGHGMSDVIVQNVLSTR-CILDGEMLVWDKSLNRFAEFGSNQEIA-------------RAAKDGFDSNRQLCYVAFDVLYVGDT-----------------SVIHRSLKERHELLRNVVKPVKGQLEVLVPND-------------GLNSDCAGCPWSIRAYNVDDVERFFKSTIENRDEGIVIKDLGSKW 426
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BLAST of NO10G00690 vs. NCBI_GenBank
Match: XP_016901803.1 (PREDICTED: DNA ligase 4 isoform X3 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 3.400e-37
Identity = 128/488 (26.23%), Postives = 212/488 (43.44%), Query Frame = 0 
Query:   74 LPFALFCDKLEMLERKKASG--HSKRRWFFDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVKALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQTEPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELKWLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDSDVR--VQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRGNQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGDYERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGRGSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREVGGXXXXXXXXXXXXXXXXXXXXXSVEQERLETLSTYFDHAVENGWEGLVIKKLDSTY 558
            + FA+     + ++R K+S    SK R F D+  C+        P   +  I+ +LP  D  +G Y L    +   L+ ALG+S  SD A R+ N   G  K  A      +G+FA     VL  R    P  LT+ E++ +L+ +A  ++         E+  + S L  + N +E+KW+V ++L D+K G+   ++   F  D         DL+ +C +         R  +++    +  + +R ++A+AA  K+ G+  + E K DG+R  +HK G ++ +FSRN  D   EY   ++++ +  + S    ILDGE++ W   L  +  FGSN+ +A             R    G    R L YV FDV+YVG                    V  + L+ER  LL  +    K  LE++   +                        S+    ++ +  +F   +EN  EG+VIK L S +
Sbjct:    5 IKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDT-FCS--------PSHYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRDSDDALRLINWRKGGAKTGA-----NAGNFALVAAEVLQRRQGMTPGGLTINELNDLLDRLASGENR-------AEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWKKLHGKEVVAECKFDGDRIQIHKNGTEVHYFSRNFLD-HSEYGHGMSDVIVQNVLSTR-CILDGEMLVWDKSLNRFAEFGSNQEIA-------------RAAKDGFDSNRQLCYVAFDVLYVGDT-----------------SVIHRSLKERHELLRNVVKPVKGQLEVLVPND-------------GLNSDCAGCPWSIRAYNVDDVERFFKSTIENRDEGIVIKDLGSKW 426
The following BLAST results are available for this feature:
BLAST of NO10G00690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25299.15.700e-5347.37dna ligase [Nannochloropsis gaditana][more]
XP_008613164.16.200e-3928.94hypothetical protein SDRG_09031 [Saprolegnia dicli... [more]
XP_012205277.18.100e-3928.88hypothetical protein SPRG_10651 [Saprolegnia paras... [more]
XP_020103399.12.000e-3726.07DNA ligase 4 [Ananas comosus][more]
XP_023546649.12.000e-3726.43DNA ligase 4 isoform X2 [Cucurbita pepo subsp. pep... [more]
XP_023546648.12.000e-3726.43DNA ligase 4 isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_020526887.12.600e-3726.75DNA ligase 4 [Amborella trichopoda][more]
XP_008451168.13.400e-3726.23PREDICTED: DNA ligase 4 isoform X1 [Cucumis melo][more]
XP_008451172.13.400e-3726.23PREDICTED: DNA ligase 4 isoform X2 [Cucumis melo][more]
XP_016901803.13.400e-3726.23PREDICTED: DNA ligase 4 isoform X3 [Cucumis melo][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000924NSK000924Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00690.1NO10G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100593g3gene5207Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00690.1NO10G00690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00690 ID=NO10G00690|Name=NO10G00690|organism=Nannochloropsis oceanica|type=gene|length=2924bp
ATGCCACCGCCGCCGGTTCGGGATGTGGACTACGACGACTCGAGTTCCCC
GCTCAAGCAGGCCGTGATGCAGCAGCAGGAGCAGCAACAGGGTCACGATG
GTCATACCCTACCATGCGATACATTTACCATTGGACGCGACACCCTTTTG
CGCCAGCAAGACAAGCGGCATCAGGTCCCAGGCGAGATCTTGGTGAAGCT
GGAAGCAGCTGCGAATGCCCTGCCCTTTGCCCTCTTCTGCGACAAGCTTG
AGATGCTTGAAAGGAAGAAGGCCAGCGGTCATTCAAAACGCCGGTGGTTC
TTTGATTCCCAGCTGTGCAACTGGCTCAAGAAGGCATCGGACGGGCCTGT
GTCGCTCTATCCGATCATTAAGTTTTTGCTGCCGGAGAAAGACGCGCGCC
AAGGGCAGTACAAGTTGGGGCCTAAAACCATAGGAGAGGCCCTCGTTAAG
GCTCTTGGACTCAGTGCACATTCCGACGCGGCTCAACGCATCACGAATTT
GGCTGGGGGTGATTTgtacgtattgatgcgtgtttacagatgttgcaaat
acatgtagcgggttataaactcgatggtcatttctattttccctcactgt
cccccctcatctattgacactttcttcaaccacagCAAGAGAAGCGCGTA
TGTTAAACAAGACTACTCGGGAGATTTTGCGACAAAAGTCGAGTCCGTCT
TGACAACACGCATTCAAACGgtagcgtgtctaggttattgcggccatact
tccctccctccttccctccctccttcccttccccccccctcgttactttt
cgatgcctctgtactcaaattatgttcacctagtaagggtccttcccctc
cccaatcacatttcccgtggctggctccctccctctttccttccctcccc
cttccctctctccgttcatttaatcccttccgaggtctgtgtcgccctct
ttactcaccttttttccttccttcccttcctccctccctccctcccgcct
gccttaccgcccatctgcccacagGAGCCCTCCAAGCTGACGCTCAAGGA
GATCGATAGCGTGCTGGAAGAGATCGCCCATCCCAAATCAAACGAGGATG
GCAAGGCCAAAATGGTTGAGAGGCTGAAGATCTTCTCTGGGCTCACAGGG
CGCATGAATCCCCGAGAATTAAAGTGGCTGgtaagagagcgaggagttgg
cgtatcgaggacgagggggtgggggagaggaggaggggttcgcatggtct
tccgagcccgtctgatgaggaaacatcaacttgactcgacttcgtcggcc
tccagtttttgttttatatatacatttttaagcgatgcatataataagtc
gttgggatggaaggggaagggcaggtctggaaagagaggcgaagtgaatt
tgggttttccaacggaaagagggaggtttcaccaagcgaccatacacatt
cctccctccctcccttcccccctctctccttcgttttctctttttctccc
tccgtgccgcctgacagGTGCGCCTCCTTTTGGGAGACATGAAGACAGGG
ATGAAGAGCGATACGGTCCTAAAGGTGTTTGGGGAGGATGGCCCAAGTCG
ACTGGAGACGGTGCATGACCTCCGGACATTGTGTGCAGAAGCTGCCTTGA
Agtaagcacgggaaggagggagggagggcgggagggagggcgggcgtggt
attctgatccagtccagctgaggctatcttggagtaagaatgggatggaa
ggaaggagggagaggggggggggaaggagaggggaaggacgaaaggaaga
aagaagggcatgtcatcctgagtctaatcgcactaaacctctttccctcc
ttcccccccttcttccccctctcctccctagCGTCGACTCCGATGTCCGC
GTTCAGCTCATGACACCCTTCAAGGTCCACGTGTGTGCCCGGGCCAACTC
CGCTAGCGCCGCACTCTCCAAGATGGAGGGCCAGCCGTTTCTGATGGAGC
GGAAGCTGGATGGAGAGCGGTATGTGCTGCATAAAAGGGGAAACCAGCTT
CGATTCTTTTCGCGCAATCTCAAGgtatgcagacggagcccatttcggca
gggttactaaacgcgtgaataggaagggcaatcgattcgcttgctccgtt
ccctcctttcttctttccttccgcctcagtacaggtattcaatgatttgt
ccctccccctctcctcagggtccacggctggagtactatgaagtgttgaa
tgacatattccttcatttctccctacctctctcacttcctccctcctcag
GACGCACGGCCGGAGTACTACACGATCTTAAATGAGATGTTCCTCGCGCG
CCTCCAGAGTGTGGAAGACCTTATTCTAGACGGGGAGGTGGTGGCGTGGA
GCGATAAACTAGGTGATTACGAGCGTTTCGGATCCAACAAAACGGTGGCC
ATTGCCCAAGCGCAGGAAGCGGCGGCGGGGATAGGTGTGAGGGAGGAAGG
GCAGGGGGCGGTGGAGGGGCGGAACTTGATGTATGTGGTGTTTGACGTGG
TGTATGTGGGAGGGAGGGGAAGCGAGGAGGCGTTTCGTAAGGCAGGGGTT
AGGGCGTGTCGGGCGTGGGAGGTGGGGAAGAAGCCGTTAAGGGAACGACG
GGCGCTGTTGTCGGCGATTGCAAACACCGAGAAGAAAGTGTTGGAGATTG
TGGAACACAGGGAAGTTGGCGGCAGCAGCAGCAGTAGACCCGGCTTAAGA
GGAGGAGGAGGAGGAGGAGGGGAAGGACGAGGGGGTAGTGTGGAGCAAGA
GCGGTTGGAAACCCTGTCGACTTACTTCGACCATGCCGTGGAGAATGGAT
GGGAGGGTTTGGTGATCAAAAAACTCGACAGCACCTACATGGGTCTGGGA
GGGCTGGGGGGGAGAAGGTGGTGA
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protein sequence of NO10G00690.1

>NO10G00690.1-protein ID=NO10G00690.1-protein|Name=NO10G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MPPPPVRDVDYDDSSSPLKQAVMQQQEQQQGHDGHTLPCDTFTIGRDTLL
RQQDKRHQVPGEILVKLEAAANALPFALFCDKLEMLERKKASGHSKRRWF
FDSQLCNWLKKASDGPVSLYPIIKFLLPEKDARQGQYKLGPKTIGEALVK
ALGLSAHSDAAQRITNLAGGDFKRSAYVKQDYSGDFATKVESVLTTRIQT
EPSKLTLKEIDSVLEEIAHPKSNEDGKAKMVERLKIFSGLTGRMNPRELK
WLVRLLLGDMKTGMKSDTVLKVFGEDGPSRLETVHDLRTLCAEAALNVDS
DVRVQLMTPFKVHVCARANSASAALSKMEGQPFLMERKLDGERYVLHKRG
NQLRFFSRNLKDARPEYYTILNEMFLARLQSVEDLILDGEVVAWSDKLGD
YERFGSNKTVAIAQAQEAAAGIGVREEGQGAVEGRNLMYVVFDVVYVGGR
GSEEAFRKAGVRACRAWEVGKKPLRERRALLSAIANTEKKVLEIVEHREV
GGSSSSRPGLRGGGGGGGEGRGGSVEQERLETLSTYFDHAVENGWEGLVI
KKLDSTYMGLGGLGGRRW*
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Synonyms
Publications