NO01G05710.1, NO01G05710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05710.1
Unique NameNO01G05710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length951
Alignment locationchr1:1598885..1600092 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1598885..1600092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G05710.1 vs.
Match: EWM22789.1 (Exoribonuclease, phosphorolytic domain 1 [Nannochloropsis gaditana])

HSP 1 Score: 359.8 bits (922), Expect = 8.900e-96
Identity = 208/313 (66.45%), Postives = 243/313 (77.64%), Query Frame = 0 
Query:    1 MYNCYTPRIATRPLPSPSSQATSSSNEGRRRKTATASTTSGGEPSRVDDRAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPKPRQDVEFSEDGKLLCDFRYAPFARRGGRLRQRKERGGRE------GGGGGGPQ-EEERAASQLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGWNVHLDPTATEEEG-DGVREG--EGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATDGALMVHAMMRKRLLKYMGDQEGGG 304
            MYNCYTPR+AT+     S+  T+S  + +R+K  T  + +  E  R+D RA+NQLRP+FIDL  VS ASGSAYLE+EHTKVLVAVYGPK RQDVEFS++GKL+CDFRY+PFA R  R    KE+GGRE      GGGGGGPQ +EERAAS+ ++QALEASVQLAKLPKSV+E++V VLQ DGGEVGAAI+CASLALA+AGIELFGLVAS  VVA T    P + K  W V +DPTA EE G +G REG  EGGV+GLALMP SGEVTQ+WQ GRLD    ERALE+A DGA MVHA+MRKRLL YM +QEGGG
Sbjct:    1 MYNCYTPRVATKT--QVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALR-ARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFT----PSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYM-EQEGGG 305
The following BLAST results are available for this feature:
BLAST of NO01G05710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22789.18.900e-9666.45Exoribonuclease, phosphorolytic domain 1 [Nannochl... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05710NO01G05710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05710.1NO01G05710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05710.1.cds1NO01G05710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05710.1.cds2NO01G05710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05710.1.cds3NO01G05710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05710.1 ID=NO01G05710.1|Name=NO01G05710.1|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
ATGTACAACTGCTATACTCCTCGCATTGCCACGCGCCCACTGCCATCGCC
ATCGTCACAAGCGACAAGCAGCAGCAATGAGGGGAGAAGAAGAAAAACTG
CCACTGCATCTACAACAAGCGGCGGGGAGCCATCACGTGTGGACGACCGG
GCATGGAACCAACTTCGGCCTCTGTTCATTGATCTTGGTGTCGTCTCACA
GGCTTCAGGCTCCGCCTACCTGGAGCTCGAGCACACCAAGGTCCTTGTAG
CTGTGTACGGGCCTAAGCCCCGGCAGGACGTAGAATTCAGTGAAGATGGG
AAACTGCTCTGTGATTTCCGATATGCGCCTTTCGCCCGCCGGGGTGGGAG
GCTCCGGCAGAGAAAGGAGAGGGGAGGGCGGGAAGGAGGAGGTGGGGGCG
GACCACAAGAGGAAGAGCGAGCGGCGTCACAACTCATAGCCCAGGCCTTG
GAAGCGTCGGTGCAGCTGGCGAAGCTACCGAAGAGCGTTATTGAGATTTA
CGTGTCGGTGCTGCAGGCGGATGGAGGAGAGGTAGGGGCGGCCATCACGT
GTGCCTCCTTGGCATTGGCGGACGCGGGGATCGAACTGTTCGGGCTGGTG
GCGTCGAGCGTAGTGGTCGCTACTACCACAGCTTCTCTACCTGGAGATAA
AAAGGGAGGGTGGAATGTGCATTTGGATCCAACGGCCACAGAGGAGGAGG
GAGATGGCGTGAGGGAGGGCGAGGGAGGGGTATTGGGGTTGGCGCTGATG
CCGACCTCTGGGGAGGTGACGCAGCTTTGGCAGAGTGGGCGGTTGGACGG
GACGGCCATGGAGAGGGCACTAGAGATAGCCACGGATGGGGCCTTGATGG
TGCACGCCATGATGCGGAAGAGGCTGTTGAAGTATATGGGAGACCAGGAG
GGGGGAGGGGGGTCCTCGTCCTCGACATCCTTGTTCTTGTCTTCCTCGTA
G
back to top

protein sequence of NO01G05710.1

>NO01G05710.1-protein ID=NO01G05710.1-protein|Name=NO01G05710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MYNCYTPRIATRPLPSPSSQATSSSNEGRRRKTATASTTSGGEPSRVDDR
AWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPKPRQDVEFSEDG
KLLCDFRYAPFARRGGRLRQRKERGGREGGGGGGPQEEERAASQLIAQAL
EASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLV
ASSVVVATTTASLPGDKKGGWNVHLDPTATEEEGDGVREGEGGVLGLALM
PTSGEVTQLWQSGRLDGTAMERALEIATDGALMVHAMMRKRLLKYMGDQE
GGGGSSSSTSLFLSSS*
back to top

mRNA from alignment at chr1:1598885..1600092+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05710.1 ID=NO01G05710.1|Name=NO01G05710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp|location=Sequence derived from alignment at chr1:1598885..1600092+ (Nannochloropsis oceanica)
ATGTACAACTGCTATACTCCTCGCATTGCCACGCGCCCACTGCCATCGCC
ATCGTCACAAGCGACAAGCAGCAGCAATGAGGGGAGAAGAAGAAAAACTG
CCACTGCATCTACAACAAGCGGCGGGGAGGTGAGTGTCATAGGAGTGGTA
GCTTGCTGATTAGTTGATATTGCGAGGGTTATTACTGGTCGACCTACGCG
CTCTTTCTCACTCTGCCACTCTTACAAATATAAGCCATCACGTGTGGACG
ACCGGGCATGGAACCAACTTCGGCCTCTGTTCATTGATCTTGGTGTCGTC
TCACAGGTATGCATGTAGACCTTTCCCAGCCCTCTCTTTCCTTCCTCTTT
TCTTCGGCTACAATGTTCTTCTTTCCATCGGTTCCCTACCACACGATACC
CTTGCTTGTCCTCGATTACTCTCGCCCATTCTCCTTCCCCCATTCTCCCT
CTTTTCAGGCTTCAGGCTCCGCCTACCTGGAGCTCGAGCACACCAAGGTC
CTTGTAGCTGTGTACGGGCCTAAGCCCCGGCAGGACGTAGAATTCAGTGA
AGATGGGAAACTGCTCTGTGATTTCCGATATGCGCCTTTCGCCCGCCGGG
GTGGGAGGCTCCGGCAGAGAAAGGAGAGGGGAGGGCGGGAAGGAGGAGGT
GGGGGCGGACCACAAGAGGAAGAGCGAGCGGCGTCACAACTCATAGCCCA
GGCCTTGGAAGCGTCGGTGCAGCTGGCGAAGCTACCGAAGAGCGTTATTG
AGATTTACGTGTCGGTGCTGCAGGCGGATGGAGGAGAGGTAGGGGCGGCC
ATCACGTGTGCCTCCTTGGCATTGGCGGACGCGGGGATCGAACTGTTCGG
GCTGGTGGCGTCGAGCGTAGTGGTCGCTACTACCACAGCTTCTCTACCTG
GAGATAAAAAGGGAGGGTGGAATGTGCATTTGGATCCAACGGCCACAGAG
GAGGAGGGAGATGGCGTGAGGGAGGGCGAGGGAGGGGTATTGGGGTTGGC
GCTGATGCCGACCTCTGGGGAGGTGACGCAGCTTTGGCAGAGTGGGCGGT
TGGACGGGACGGCCATGGAGAGGGCACTAGAGATAGCCACGGATGGGGCC
TTGATGGTGCACGCCATGATGCGGAAGAGGCTGTTGAAGTATATGGGAGA
CCAGGAGGGGGGAGGGGGGTCCTCGTCCTCGACATCCTTGTTCTTGTCTT
CCTCGTAG
back to top

Coding sequence (CDS) from alignment at chr1:1598885..1600092+

>NO01G05710.1 ID=NO01G05710.1|Name=NO01G05710.1|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr1:1598885..1600092+ (Nannochloropsis oceanica)
ATGTACAACTGCTATACTCCTCGCATTGCCACGCGCCCACTGCCATCGCC
ATCGTCACAAGCGACAAGCAGCAGCAATGAGGGGAGAAGAAGAAAAACTG
CCACTGCATCTACAACAAGCGGCGGGGAGCCATCACGTGTGGACGACCGG
GCATGGAACCAACTTCGGCCTCTGTTCATTGATCTTGGTGTCGTCTCACA
GGCTTCAGGCTCCGCCTACCTGGAGCTCGAGCACACCAAGGTCCTTGTAG
CTGTGTACGGGCCTAAGCCCCGGCAGGACGTAGAATTCAGTGAAGATGGG
AAACTGCTCTGTGATTTCCGATATGCGCCTTTCGCCCGCCGGGGTGGGAG
GCTCCGGCAGAGAAAGGAGAGGGGAGGGCGGGAAGGAGGAGGTGGGGGCG
GACCACAAGAGGAAGAGCGAGCGGCGTCACAACTCATAGCCCAGGCCTTG
GAAGCGTCGGTGCAGCTGGCGAAGCTACCGAAGAGCGTTATTGAGATTTA
CGTGTCGGTGCTGCAGGCGGATGGAGGAGAGGTAGGGGCGGCCATCACGT
GTGCCTCCTTGGCATTGGCGGACGCGGGGATCGAACTGTTCGGGCTGGTG
GCGTCGAGCGTAGTGGTCGCTACTACCACAGCTTCTCTACCTGGAGATAA
AAAGGGAGGGTGGAATGTGCATTTGGATCCAACGGCCACAGAGGAGGAGG
GAGATGGCGTGAGGGAGGGCGAGGGAGGGGTATTGGGGTTGGCGCTGATG
CCGACCTCTGGGGAGGTGACGCAGCTTTGGCAGAGTGGGCGGTTGGACGG
GACGGCCATGGAGAGGGCACTAGAGATAGCCACGGATGGGGCCTTGATGG
TGCACGCCATGATGCGGAAGAGGCTGTTGAAGTATATGGGAGACCAGGAG
GGGGGAGGGGGGTCCTCGTCCTCGACATCCTTGTTCTTGTCTTCCTCGTA
G
back to top
Synonyms
Publications