NO01G05710, NO01G05710 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05710 vs. NCBI_GenBank
Match: EWM22789.1 (Exoribonuclease, phosphorolytic domain 1 [Nannochloropsis gaditana]) HSP 1 Score: 269.6 bits (688), Expect = 1.200e-68 Identity = 188/305 (61.64%), Postives = 208/305 (68.20%), Query Frame = 0 Query: 1 MYNCYTPRIATRPLPSXXXXXXXXXXXXXXXXXXXXXXXXGGEPSRVDDRAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPKPRQDVEFSEDGKLLCDFRYAPFARRGGR------XXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGWNVHLDPTATEE---EGDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATDGALMVHAMMRKRLLKYM 297 MYNCYTPR+AT+ S E R+D RA+NQLRP+FIDL VS ASGSAYLE+EHTKVLVAVYGPK RQDVEFS++GKL+CDFRY+PFA R R XXXXXXXXXXXXXXXXXXXXXXXXXXX QLAKLPKSV+E++V VLQ DGGEVGAAI+CASLALA+AGIELFGLVAS VVA T P + K W V +DPTA EE LALMP SGEVTQ+WQ GRLD ERALE+A DGA MVHA+MRKRLL YM Sbjct: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPAR--SESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFT----PSEGKREWRVRVDPTAAEEXXXXXXXXXXXXXXXXXLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYM 299
BLAST of NO01G05710 vs. NCBI_GenBank
Match: EWM22788.1 (Exoribonuclease, phosphorolytic domain 1 [Nannochloropsis gaditana]) HSP 1 Score: 261.2 bits (666), Expect = 4.300e-66 Identity = 186/305 (60.98%), Postives = 207/305 (67.87%), Query Frame = 0 Query: 1 MYNCYTPRIATRPLPSXXXXXXXXXXXXXXXXXXXXXXXXGGEPSRVDDRAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPKPRQDVEFSEDGKLLCDFRYAPFARRGGR------XXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGWNVHLDPTATEE---EGDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATDGALMVHAMMRKRLLKYM 297 MYNCYTPR+AT+ S E R+D RA+NQLRP+FIDL + ASGSAYLE+EHTKVLVAVYGPK RQDVEFS++GKL+CDFRY+PFA R R XXXXXXXXXXXXXXXXXXXXXXXXXXX QLAKLPKSV+E++V VLQ DGGEVGAAI+CASLALA+AGIELFGLVAS VVA T P + K W V +DPTA EE LALMP SGEVTQ+WQ GRLD ERALE+A DGA MVHA+MRKRLL YM Sbjct: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPAR--SESFRMDGRAYNQLRPVFIDL---NTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFT----PSEGKREWRVRVDPTAAEEXXXXXXXXXXXXXXXXXLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYM 296
BLAST of NO01G05710 vs. NCBI_GenBank
Match: CBN78128.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 183.3 bits (464), Expect = 1.100e-42 Identity = 111/250 (44.40%), Postives = 144/250 (57.60%), Query Frame = 0 Query: 45 SRVDDRAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPKPRQ--DVEFSEDGKLLCDFRYAPFARRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGWNVHLDPTATEEEGDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATDGALMVHAMMRKRL 293 +R D RA +R +++D+GVV+ A+GSAY+E HTKV+ AVYGP + D FSE+G+L CDF YAPFA GGR L+ Q LE+S+Q+ +L KSV+ ++V VLQADGGE+ A TCAS+ALADAGIEL+ LV + V G + LDPT EE+ GV+ +ALMP S +VTQ WQ GR DG + ALE+ TDG VH MM +L Sbjct: 42 TREDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGR-----------RETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYC-----------GTQMVLDPTKEEEKSG------AGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKL 263
BLAST of NO01G05710 vs. NCBI_GenBank
Match: XP_004352492.1 (3' exoribonuclease family, domain 1 domain containing protein [Acanthamoeba castellanii str. Neff] >ELR23015.1 3' exoribonuclease family, domain 1 domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 161.0 bits (406), Expect = 6.100e-36 Identity = 97/252 (38.49%), Postives = 141/252 (55.95%), Query Frame = 0 Query: 43 EPSRVDDRAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPKPRQDVEFSEDGKLLCDFRYAPFARRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGWNVHLDPTATEEEGDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATDGALMVHAMMRKRLLK 295 E R+D R+ ++ RP+F+ GV+SQA+GSAY+E+ TKV+ VYGP+ +SE GKL C F+ A FA G R L+ QALE S++L PKS ++++V VL+ GG VGAAIT ASLALADAGIE++ LVAS V + ++ LDP+ EE + L +A+MP++ E+TQ+ Q+G ++ T A+E+ DG ++ MMR+ LL+ Sbjct: 36 EGKRLDGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPRQTPKTVYSEKGKLNCFFKLATFAENGER-------------RKYVSDKEEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSVGVVDS-----------HILLDPSIAEE------KAAQSNLMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQNLLE 257
BLAST of NO01G05710 vs. NCBI_GenBank
Match: GAY06697.1 (exosome complex exonuclease MTR3-like protein [Pythium insidiosum]) HSP 1 Score: 155.2 bits (391), Expect = 3.300e-34 Identity = 97/234 (41.45%), Postives = 136/234 (58.12%), Query Frame = 0 Query: 50 RAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPK--PRQDVEFSEDGKLLCDFRYAPFARRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLV--ASSVVVATTTASLPGDKKGGWNVHLDPTATEEEGDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATD 280 R+ +++RP F+ LGVVS A+GSAY+E T+V+ +VYGP+ R EFS++G+L+CDF+YAPFA GR ++ QAL +V L+KLPK V+ I+V VL++DGGE+ AAI CASLAL DA +E++ +V AS+ VV + V LDP A EE G+G V+ LA MPT G +T QSGRL ++ A+++ TD Sbjct: 41 RSADEMRPTFMKLGVVSGAAGSAYVEFHRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADASGR-------------RERGQDDDELELSSILTQALSPAVMLSKLPKCVVSIFVVVLESDGGELAAAINCASLALVDAAVEMYDVVTAASAAVVDS-------------RVVLDPCAAEE-----TRGDGKVV-LAYMPTLGRLTHTLQSGRLQHAQLQEAVDLCTD 242
BLAST of NO01G05710 vs. NCBI_GenBank
Match: GAY01328.1 (exosome complex exonuclease MTR3-like protein [Pythium insidiosum]) HSP 1 Score: 152.5 bits (384), Expect = 2.200e-33 Identity = 96/233 (41.20%), Postives = 135/233 (57.94%), Query Frame = 0 Query: 50 RAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPK--PRQDVEFSEDGKLLCDFRYAPFARRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLV--ASSVVVATTTASLPGDKKGGWNVHLDPTATEEEGDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIAT 279 R+ +++RP F+ LGVVS A+GSAY+E T+V+ +VYGP+ R EFS++G+L+CDF+YAPFA GR ++ QAL +V L+KLPK V+ I+V VL++DGGE+ AAI CASLAL DA +E++ +V AS+ VV + V LDP A EE G+G V+ LA MPT G +T QSGRL ++ A+++ T Sbjct: 41 RSADEMRPTFMKLGVVSGAAGSAYVEFHRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADASGR-------------RERGQDDDELELSSILTQALSPAVMLSKLPKCVVSIFVVVLESDGGELAAAINCASLALVDAAVEMYDVVTAASAAVVDS-------------RVVLDPCAAEE-----TRGDGKVV-LAYMPTLGRLTHTLQSGRLQHAQLQEAVDLCT 241
BLAST of NO01G05710 vs. NCBI_GenBank
Match: PRP84693.1 (hypothetical protein PROFUN_07943 [Planoprotostelium fungivorum]) HSP 1 Score: 149.1 bits (375), Expect = 2.400e-32 Identity = 92/221 (41.63%), Postives = 127/221 (57.47%), Query Frame = 0 Query: 49 DRAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPKPRQDVEFSEDGKLLCDFRYAPFA--RRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGWNVHLDPTATE--EEGDGVREGEGGVLGLALMPTSGEVTQLWQSGRL 266 DR N+ R F+ G++ QASGSAYLE+ +TK++ +YGP+ +EFSE KL CDF++A FA RR R L+ QALE+S+ L K PKSVI+ YV VL+ DGG + AITCAS+ALA+AGIE++ LVA++ + G + LDPT E E G ++G GGV+ + MP E+TQ+WQSG++ Sbjct: 39 DRKRNEFRQFFMKTGIIGQASGSAYLEMANTKIICGIYGPRQIPKMEFSEKAKLQCDFKFATFAESRRERR--------------KYTADKEEKEFSMLMVQALESSLILEKYPKSVIDCYVIVLENDGGALNGAITCASMALANAGIEMYDLVAAASI---------GLNPLNGEILLDPTEAEEIEYKKGGKKG-GGVVTIGFMPGMNEITQIWQSGQI 235
BLAST of NO01G05710 vs. NCBI_GenBank
Match: ORY07238.1 (ribosomal protein S5 domain 2-like protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 145.2 bits (365), Expect = 3.400e-31 Identity = 95/255 (37.25%), Postives = 139/255 (54.51%), Query Frame = 0 Query: 46 RVDDRAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPKPRQDVEFSEDGKLLCDFRYAPF--ARRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQAD--GGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGW---NVHLDPTATEEEGDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATDGALMVHAMMRKRLL 294 R D R+ +LRP+F+ G++SQA+GSAY+E++HTK+ A+YGP+ + F+ G+L C+F++ PF A+R G +I QAL SV+L PKSV++IY+SVL++D G V AAITCAS+ALADAGIE+ LVA+S GG+ V LD T++EE E + G L L+ MP+ EVT + G + +A+E D ++++M LL Sbjct: 34 RSDGRSTEELRPIFLKTGLISQANGSAYIEMQHTKIACAIYGPRQAKKPSFNNKGELNCEFKFTPFSCAKRRGH----------------LRDAQERELSQIITQALTPSVRLELFPKSVVDIYISVLESDGIGNTVAAAITCASVALADAGIEMLDLVAAS--------------SGGFFQSQVILDCTSSEE------ELQQGSLVLSYMPSLNEVTHIVLGGETEVAMSNQAIEQCIDTCTKIYSVMNHSLL 252
BLAST of NO01G05710 vs. NCBI_GenBank
Match: XP_002899049.1 (exosome complex exonuclease MTR3-like protein [Phytophthora infestans T30-4] >EEY62413.1 exosome complex exonuclease MTR3-like protein [Phytophthora infestans T30-4]) HSP 1 Score: 142.5 bits (358), Expect = 2.200e-30 Identity = 91/230 (39.57%), Postives = 133/230 (57.83%), Query Frame = 0 Query: 53 NQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPK--PRQDVEFSEDGKLLCDFRYAPFARRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGWNVHLDPTATEEE-GDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATD 280 +++R F+ LG VS A+GSAY+EL T+VL AVYGP+ R EFS+DG+L+CD +YAPFA + R ++ +AL +V L KLPK +I ++V++L+ DGG + AA+ CASLALADA +E++ +V TAS G G +V LDP+ EE+ GD G L LA MP+ G VT + Q+G++ T ++ A+++ TD Sbjct: 35 DEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTR-------------RERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYDVV---------TASSAGIVNG--SVVLDPSREEEQRGD-------GKLALAYMPSMGRVTYMLQAGKIHHTQLQEAVDLCTD 233
BLAST of NO01G05710 vs. NCBI_GenBank
Match: XP_008911776.1 (hypothetical protein PPTG_15780 [Phytophthora parasitica INRA-310] >ETI37441.1 hypothetical protein F443_16568 [Phytophthora parasitica P1569] >ETK77652.1 hypothetical protein L915_16102 [Phytophthora parasitica] >ETL31097.1 hypothetical protein L916_15995 [Phytophthora parasitica] >ETL84351.1 hypothetical protein L917_15793 [Phytophthora parasitica] >ETM37534.1 hypothetical protein L914_15923 [Phytophthora parasitica] >ETN02819.1 hypothetical protein PPTG_15780 [Phytophthora parasitica INRA-310] >ETO66208.1 hypothetical protein F444_16545 [Phytophthora parasitica P1976] >ETP07291.1 hypothetical protein F441_16397 [Phytophthora parasitica CJ01A1] >ETP35363.1 hypothetical protein F442_16411 [Phytophthora parasitica P10297] >KUG00252.1 Exosome complex component MTR3 [Phytophthora nicotianae]) HSP 1 Score: 141.4 bits (355), Expect = 5.000e-30 Identity = 91/230 (39.57%), Postives = 132/230 (57.39%), Query Frame = 0 Query: 53 NQLRPLFIDLGVVSQASGSAYLELEHTKVLVAVYGPK--PRQDVEFSEDGKLLCDFRYAPFARRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAITCASLALADAGIELFGLVASSVVVATTTASLPGDKKGGWNVHLDPTATEEE-GDGVREGEGGVLGLALMPTSGEVTQLWQSGRLDGTAMERALEIATD 280 +++R F+ LG VS A+GSAY+EL T+V+ AVYGP+ R EFS+DG+L+CD +YAPFA + R ++ +AL +V L KLPK +I ++V++L+ DGG AAI CASLALADA +E++ +V TAS G G +V LDP+ EE+ GD G L LA MP+ G VT + Q+G++ T ++ A+++ TD Sbjct: 35 DEMRRPFMQLGAVSGAAGSAYVELGRTRVVCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTR-------------RERGQDPDELELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVFAAAINCASLALADAAVEMYDVV---------TASSAGIVNG--SVVLDPSREEEQRGD-------GKLALAYMPSMGRVTYMLQAGKIHHTQLQEAVDLCTD 233 The following BLAST results are available for this feature:
BLAST of NO01G05710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05710 ID=NO01G05710|Name=NO01G05710|organism=Nannochloropsis oceanica|type=gene|length=1208bpback to top protein sequence of NO01G05710.1 >NO01G05710.1-protein ID=NO01G05710.1-protein|Name=NO01G05710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bpback to top Synonyms
Publications
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