NO01G05310, NO01G05310 (gene) Nannochloropsis oceanica

Overview
NameNO01G05310
Unique NameNO01G05310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1174
Alignment locationchr1:1415727..1416900 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranslocase of inner mitochondrial membrane 13
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1415727..1416900 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035427Tim10-like_dom_sf
IPR004217Tim10/DDP_fam_Znf
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
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BLAST of NO01G05310 vs. NCBI_GenBank
Match: EWM22746.1 (translocase of inner mitochondrial membrane 13 [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 2.200e-22
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0 
Query:    1 MAQKLTPDQQEAVIHKFRSEMAAQAMQELVXXXXXXXXXXXXXXSGNRLESKEQSCVAMCMDRYIETMNVVQHTLSERSATR 83
            MAQKLTPDQQEAVIHKFR+EMAAQAM    XXXXXXXXXXXXXX GNRL+SKEQ+CVAMCMDRYIETMNVVQH+LSERSATR
Sbjct:    1 MAQKLTPDQQEAVIHKFRAEMAAQAMXXXXXXXXXXXXXXXXXXXGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR 82
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BLAST of NO01G05310 vs. NCBI_GenBank
Match: EWM22747.1 (translocase of inner mitochondrial membrane 13 [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 2.200e-22
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0 
Query:    1 MAQKLTPDQQEAVIHKFRSEMAAQAMQELVXXXXXXXXXXXXXXSGNRLESKEQSCVAMCMDRYIETMNVVQHTLSERSATR 83
            MAQKLTPDQQEAVIHKFR+EMAAQAM    XXXXXXXXXXXXXX GNRL+SKEQ+CVAMCMDRYIETMNVVQH+LSERSATR
Sbjct:   33 MAQKLTPDQQEAVIHKFRAEMAAQAMXXXXXXXXXXXXXXXXXXXGNRLDSKEQNCVAMCMDRYIETMNVVQHSLSERSATR 114
The following BLAST results are available for this feature:
BLAST of NO01G05310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22746.12.200e-2289.02translocase of inner mitochondrial membrane 13 [Na... [more]
EWM22747.12.200e-2289.02translocase of inner mitochondrial membrane 13 [Na... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006292NSK006292Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05310.1NO01G05310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577724gene_564Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100143g2gene7691Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05310.1NO01G05310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05310 ID=NO01G05310|Name=NO01G05310|organism=Nannochloropsis oceanica|type=gene|length=1174bp
AGCCCTCCCCTCCTCCAAGACACCACCACCAAACCACACCATAACAAGCC
ATGGCACAAAAGCTCACCCCCGACCAACAAGAGGCGGTCATCCACAAGgt
tagtgtatagtacgaggatagaatggaggcttctttgcttgtgcgtagtg
gaggaggggagtgggaagggatggatgcatgtgttctggggcaagctgca
gggcgtgtcggaggcaatatggcagcagtgatatccatatctcagccgaa
taaggtcatataagtatagggaggcctcatgtcaaaacctgcttggcgtt
tagtcggtgtatttgtcatgtggctgggagatgtgatgcagggacgaggc
aaaaagggtagcctcacggggtgagctccttatagcgcactagcactccc
atgctggcataatttggatgtcttatgtcgaagggaacctttggacagca
tctgaagagatggatgaactttttacaatgagcttggtaacagtgcccgt
cctctcgattatccgctgtccaggcatgttaatttctcttcaaggagaga
tggaagaggattgataaagcgacacgtgattcaaaataagcgccggcatg
taatctgtcttttcaagttgttttttcgcgtcatttagcgtaggaaactt
tggatgaagggcggtgtttcttcctctgctcatattctgcttttcctcac
cacagTTTCGCTCGGAGATGGCAGCGCAAGCCATGCAGGAACTGGTGCAA
AAAATGACCGACAAATGCTTCACCAAGTGCACCGGGAAGAGTGGGAATCG
TCTGGAGTCCAAGgtaaagggggattgggagggtgcatgagggcggggag
ggggaaagccgccaatcatagaacagaggggcggaagaagggggacaata
attttatatatatatatagataatttaccgcccacttttgatatcttgat
atctccccacactctccttcttacaaaatgtgcagGAGCAAAGTTGCGTC
GCCATGTGCATGGATCGGTACATTGAGACCATGAACGTCGTGCAACATAC
CCTGAGTGAGCGCAGCGCCACACGATAGATTAAAATATCCACAGGTTGAC
GGAAAAGAAAACGGGAGGAGTTGGAAAGAATCAAGCCTTGACATATTATT
TGAGCTTTCAATTGCGGGGGGAGG
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protein sequence of NO01G05310.1

>NO01G05310.1-protein ID=NO01G05310.1-protein|Name=NO01G05310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MAQKLTPDQQEAVIHKFRSEMAAQAMQELVQKMTDKCFTKCTGKSGNRLE
SKEQSCVAMCMDRYIETMNVVQHTLSERSATR*
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Synonyms
Publications