NO01G04530, NO01G04530 (gene) Nannochloropsis oceanica

Overview
NameNO01G04530
Unique NameNO01G04530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1788
Alignment locationchr1:1197154..1198941 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1197154..1198941 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G04530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007822NSK007822Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04530.1NO01G04530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04530.1NO01G04530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04530 ID=NO01G04530|Name=NO01G04530|organism=Nannochloropsis oceanica|type=gene|length=1788bp
ATGGGCTTGTGGTTGCTTTTCCTGACAGTGGCCAATCCCGTTGAAGTATT
GCCTTTGCCAGTAGCAGAGGGATGGAGGAAAGGTGGGAGGGAGGAAGAGA
TGCATGCAAATGTGATGAGGGTAGCCGTTGCAGCATTACGGGATTACGCG
AAATTTTGGAGGAGAAGGGAGGGAGGAGAAGGGGTGTCGTCGTCGTCGGT
GTCATGGGAAAGGGAGGGGGAAGGGGATGAGAAAAGGACACGGACGTTTT
GGTTTTCAGAAGAGGAGGAGGGAAGGACGGAGGGTAGGATGGAGGAAGGG
AGGATGAAGACCATTGATGGGCTTTCAGGGACAAGGGGGGGAGGGGAAAA
GGAGTGGAAGGTTCCTCAGTATGGTGCCCGCAGCCGCGGCCCCGGCTGTG
GTGTGGCTGGTAATAACATGCAGCACGTGTTGGAGGTCCTACGCGATGCG
ATTATACCCTTCTCCTTTCTTCCTTCTTCCGACCCGCGTTCAAAAGAGGA
GTGCCGAGCAGAAGAGGATGTATACATGAGGGAAGTGGTGCTGCCGGAGA
GAAGTCGGAGGGCCGACCCTGCCATGTTTGAGAGGGACAGGAACACAGGG
CAGTGGAATGAGGTCTCGTTGGAGGACGAGGGGGAGGACGGGGAGGAGAA
TTTGGGGAACGAAAAGGTTACCACGATGATGAAGATGGCGGCTGCAAATC
TGGCGGCGGCAGGGGCGTCGTCTTCAGCGGCGAGGCTGAGGGAGCAGCAG
GAGCAGCGGTTGAAAGCGGACTCTATCCAGAAACGAAAGGATGACTATGT
AGCCCAGGAAATGGATTTGATGCGGATGATTTTGGAGGAACGTACGGGGA
AGGATGTGGGGTTAGAGGGGCTCGGCAGCAGCAGCAGCAGCAGTAGTAGT
AGTAGTGGCATCAGCACCAGTACCAGCAACCGTGACACTCGAGAAAGTGA
GCGGGCGGTCACGATGAAGAGGCTGGAGGAGGGGAGAATGAGGGAGCAGC
TCTTGGCGGGGATGGCGCCGTCCTTCATGGAAGACGAGGAGGAGGGAGGG
AGGGAGGGAGGATTGTTCACGCACGAGAGCGGGCAGGATGACCTGGCTAC
AGAAGCAGCAGCGGCCGAGGCAGCTCAGGCCCGCGCGCTGGCAGGTGCGG
CCCTGCAGGCGAAGCGGCAGCAGCAACAAAGACAAGAGCAACAGCAGGAG
CAGCAGCTTCTCCTGCGACAAGCAGAGGAAGCCATGGCTGCGGCTGCTGC
GGCCGCAGCTGCTGTTACTGCTGCTGCAGGTATCTCCGTACCACAGCTGG
AGACGGAGCAGCAGCAGCAGCAGCAGCAGTCGTCCACGTCCCCGAATCTG
CCAAAGATAATGATGAGCATGGAAAAGGCAGACGAAGACGTTGGCAAACT
ACGGAGAACGCTCTCAGATACTTGGCCGGCTTTTCTCCAGGAGATGGGTG
AGGGAGGGAGGGGGGAACAAGAGGGTTTGTCATGGGAGAAGGCAGCAGGG
GCGCAGCAGGTCGTGACGGCGGCGGAGGAAGGGCAAACTGAAGGTCAAAG
TGAGTGGCGAGATACCGAAGAAAAGGAGCAGCAGCAGCAAGAATTCGATG
CATTTATCGGGCCGTCATTCACACCTTTTCCTCCTGAGGACTTGTCCTCA
TCAAGCTCGCGAGGGACATCTCCTCCGCCGAGCCGGCGACAGAGCTGGAC
CAGTAAAGGGGGGGGAGAGGAGGAGGAGGGAAAGGAGGAGGTGGAAAGCG
ACGGAAAAAAACATGAGTGTCGTTTATTAAGTGGATAA
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protein sequence of NO01G04530.1

>NO01G04530.1-protein ID=NO01G04530.1-protein|Name=NO01G04530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp
MGLWLLFLTVANPVEVLPLPVAEGWRKGGREEEMHANVMRVAVAALRDYA
KFWRRREGGEGVSSSSVSWEREGEGDEKRTRTFWFSEEEEGRTEGRMEEG
RMKTIDGLSGTRGGGEKEWKVPQYGARSRGPGCGVAGNNMQHVLEVLRDA
IIPFSFLPSSDPRSKEECRAEEDVYMREVVLPERSRRADPAMFERDRNTG
QWNEVSLEDEGEDGEENLGNEKVTTMMKMAAANLAAAGASSSAARLREQQ
EQRLKADSIQKRKDDYVAQEMDLMRMILEERTGKDVGLEGLGSSSSSSSS
SSGISTSTSNRDTRESERAVTMKRLEEGRMREQLLAGMAPSFMEDEEEGG
REGGLFTHESGQDDLATEAAAAEAAQARALAGAALQAKRQQQQRQEQQQE
QQLLLRQAEEAMAAAAAAAAAVTAAAGISVPQLETEQQQQQQQSSTSPNL
PKIMMSMEKADEDVGKLRRTLSDTWPAFLQEMGEGGRGEQEGLSWEKAAG
AQQVVTAAEEGQTEGQSEWRDTEEKEQQQQEFDAFIGPSFTPFPPEDLSS
SSSRGTSPPPSRRQSWTSKGGGEEEEGKEEVESDGKKHECRLLSG*
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Synonyms
Publications