NO01G03960, NO01G03960 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03960 vs. NCBI_GenBank
Match: EWM29324.1 (gdp-l-galactose phosphorylase [Nannochloropsis gaditana]) HSP 1 Score: 427.2 bits (1097), Expect = 7.900e-116 Identity = 237/490 (48.37%), Postives = 300/490 (61.22%), Query Frame = 0 Query: 62 LVLPFLVVVMHFRPGRPHGAITRSAYSGAGPEETSWAASWPCIQGLPQGIVQDLYGIGDGKSAIDMLVYQSPVPLHSTITSSSSSSFMRFILALGAGSKGLQGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQ----------DEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALSGTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVEEC 542 L+LP LVV++HF RPH +T E WA+ WPC+ P+G + ++YG + D+ VYQ P S S ++L L AG + +P L LG LIK+ W+ K+K G F+T+V GA R SQG PW ELY NPGR+ KP S+ A V ++S P++ FSFL AP++D+MFWY+ P+ EEG C+PV+R A R A + H V INPYPIGDLSGVL PF FE+RPQ L+ SLDA+TVGL+FA+ELLA R + T LR+GFNS GA A+I HLHFQFW G DG +PIER P P TSF VEL+VI +HPIRS+ LSG S+PALAKA AHC++VL+ RNIPFSLLMNG+HLYIMPRRF++ T F S GFPEAAG LLV+N+T WRD +LLNADIVWDLW +++ V E+F ++ C Sbjct: 4 LLLPLLVVIVHF---RPHDPMT--------VESVDWASFWPCLVDPPEGTLAEVYGARGSEQDRDVFVYQKPFNFIPP-QPSPPLSVKEYLLGL-AGVRERCEIFDPRKLGLGGLIKHRWDQKQKTGQ-FRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSK------GGDGAEESWSTAMSCEPVDR---ATRGHA-RDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGAR------RDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSAC 463
BLAST of NO01G03960 vs. NCBI_GenBank
Match: ETO29934.1 (hypothetical protein RFI_07185 [Reticulomyxa filosa]) HSP 1 Score: 104.4 bits (259), Expect = 1.200e-18 Identity = 62/204 (30.39%), Postives = 104/204 (50.98%), Query Frame = 0 Query: 303 AQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALSGTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDF-TSVGFPEAAGLLLVMNE 506 A+ H + +N +PIG+ SG+ P+ ++K PQVL+ L L VGL F A L+ + K R+GFNS GA A++NH HFQFW GL+P+E L + +++ +PIR++ + + HC+ L+ +IP +L+++ + +Y+ R LT ++ GF + +G + V+NE Sbjct: 334 AKTDTHLLLVNRFPIGNYSGLFTPYFWQKLPQVLTKEL--LHVGLQFNAMFLSQSH-----------KGTFRVGFNSLGAMASVNHFHFQFWKID---TGLLPVETLHKTPIPTANKQHLQIFTFNDNVYPIRTLIYPIVTGNRTLETLWHCVKFLIESDIPHNLMISRQFVYLFVRNEQQLTSNYPIFYGFSDVSGWITVLNE 521
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_001749638.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ85447.1 predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 99.4 bits (246), Expect = 3.800e-17 Identity = 78/249 (31.33%), Postives = 120/249 (48.19%), Query Frame = 0 Query: 303 AQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMALS--GTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKH-----------LYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELV 539 A HQH V INP+P+G LSG+L P++ E RPQV+ + DALT G +FA L Q P RL FNS A A++NHLHFQFW F D + +E L RQ L G EL++ + P+ ++A+ T+ +D+L +PF+L+ + + +YI+ R+ ++GFPE +G L+ + + + T N + W +SG+ + E + Sbjct: 172 ADLHQHAVLINPFPLGWLSGLLVPYLLEHRPQVM--TRDALTAGFAFAQRL--------QNP-------YTRLAFNSLEAGASVNHLHFQFWQF----DAPLAVE-LATRQ--LYFRFGEELTLHILPDAPVHTLAVEYFRTTATGAIVVVQRIIDLLYQHVLPFNLVFSRYYVNAGISPSRSTVYIVLRQRMH-PFPGINIGFPEVSGELICTSSSIYHSVTAHN---ISQHWRDNVRLSGDRYTEFL 392
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_004995109.1 (hypothetical protein PTSG_04213 [Salpingoeca rosetta] >EGD83605.1 hypothetical protein PTSG_04213 [Salpingoeca rosetta]) HSP 1 Score: 99.4 bits (246), Expect = 3.800e-17 Identity = 82/246 (33.33%), Postives = 114/246 (46.34%), Query Frame = 0 Query: 297 FAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIR---SMALSGTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVE 540 F++ + + H V +N P+ SG+L PF+ E+R QV+ + DAL VGL FA L S +R+GFNS A A++NHLHFQFW + +PIE + T VE G +R A G V AL A H L RN P++L++ +Y++PR+ L +VGFPE +G LV + D L A+ V W V VF ELV+ Sbjct: 155 FSDIQAFHRPVHAVLVNKSPLSKYSGLLVPFLREQRNQVM--TADALLVGLGFANRLQGSG---------------IRVGFNSLYAGASVNHLHFQFWWDTHA----LPIELAEMTTVTATDRLLVERDA-GYLSSFLRFTYDRAAPGVVVEALMPALQH----LTRRNTPYNLVLVPGMVYLLPRQPMLKQLGSINVGFPEVSGTPLVPSHD---DFVALTAEDVVRHWTTHVRVPSTVFDELVD 371
BLAST of NO01G03960 vs. NCBI_GenBank
Match: CBJ28200.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 93.2 bits (230), Expect = 2.700e-15 Identity = 71/260 (27.31%), Postives = 113/260 (43.46%), Query Frame = 0 Query: 299 EREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGL------------IPIERLPLRQPM---LTSFPGVELSVIGIKHHPIRSMALS--GTSVPALAKAGAHCLDVLVSRNIPFSLLMNGKHLYIMPRRFSDLTLDFTSVGFPEAAGLLLVMNETQWRDETLLNADIVWDLWDKTYGVSGEVFKELVEEC 542 E A Q V +N P+G +S +L P Q + +L V + FA EA+ +P RLGFNS G+ A++NHLHFQ W F GP GL +P+ R P + L V ++ +PIR++ G + A +A C+ LV N P +++ + ++++PR+ + GFPE +G ++V E D + AD +++ W V E F + + C Sbjct: 312 EASTASPPQDAVLVNIRPVGPVSLLLTPGYAHSHNQ--RATAYSLAVAIDFA-------EALRVDP-------GFRLGFNSAGSSASVNHLHFQCWYFDAGPGGLAIESSKTRHLATVPLPRSSFSPPAEGENAADKEDSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTRED---DFHTITADQIYEWWRDKVAVDSEHFDRITDGC 552
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_013725714.1 (GDP-L-galactose phosphorylase 1-like [Brassica napus]) HSP 1 Score: 85.1 bits (209), Expect = 7.400e-13 Identity = 82/319 (25.71%), Postives = 145/319 (45.45%), Query Frame = 0 Query: 168 PNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMAL-SGTSVPALAKAGAHCLDVLVSRNIPFSLLM--NGKHLYIMPRRFSD 484 P L L+ WE + ++G +F+ V ET+ GK + + +L +P+ +V+ V F+ + F+F ++L+F ++ +D E C PV +A+ V IN PI +L P + + PQ + +L + L AAE A RLG+NS GA ATINHLHFQ + + P+E+ P ++ M+T+ GV++S + ++P+RS+ GTS+ L+ + L + NIPF++L+ +G+ +++MP+ +++ Sbjct: 67 PPVAFLESLVLEEWEDRFQRG-LFRYDVTACETKVIPGK-YGFVAQLNEGRHLKKRPTEF---RVDKVLQSFDGNKFNFTKVGQEELLFQFEAGEDCEA------------------QFFPCMPV---------DAENSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHK--SLLLALHMAAE---------------AANPYFRLGYNSLGAFATINHLHFQAYYLAMP----FPLEKAPSKK-MITTVSGVKIS--ELVNYPVRSLLFEGGTSMQDLSDTVSDACVCLQNNNIPFNILISDSGRQIFLMPQCYAE 329
BLAST of NO01G03960 vs. NCBI_GenBank
Match: GAQ93260.1 (GDP-L-galactose phosphorylases [Klebsormidium nitens]) HSP 1 Score: 85.1 bits (209), Expect = 7.400e-13 Identity = 85/333 (25.53%), Postives = 144/333 (43.24%), Query Frame = 0 Query: 157 AGSKGLQGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVE---LSVIGIKHHPIRSMALS-GTSVPALAKAGAHCLDVLVSRNIPFSLLM--NGKHLYIMPRRFSD 484 + S G P+ L +L+ WE + ++G +F+ V ET+ G ++ + +L +P+ +V+ V PF+ F+F +++F ++ Q E+G R D+ E + V IN PI +L P + + PQ L +D+L + L FA E A LRLG+NS GA ATINHLHFQ + + + P P+E R P + P + V ++ +P+R++ G S+P LA A L RN PF++L+ +G +++ P+ +++ Sbjct: 76 SNSSGSDSDSEPDKSCLDQLLVAQWEDRAERG-LFRYDVTACETKMLAG-EYGFIAQLNEGRHLKKRPTEF---RVDQVLQPFDAAKFNFTKVDPAEVLFRFE--QSEDG---------------------------RSDYYEHAPVSDSPNVVIINVSPIEYGHVLLVPRVLDCLPQRL--DVDSLLLALHFAHE---------------ADNPYLRLGYNSLGAFATINHLHFQAY-YLNAP---FPVE----RAPTVCFSPKKRKRAVKVCELRQYPVRALVFEVGASLPELAAAVGRVCARLQDRNRPFNVLIADSGARVFVFPQCYAE 349
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_016578063.1 (PREDICTED: GDP-L-galactose phosphorylase 1-like [Capsicum annuum] >PHT79927.1 GDP-L-galactose phosphorylase 1 [Capsicum annuum]) HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12 Identity = 79/322 (24.53%), Postives = 141/322 (43.79%), Query Frame = 0 Query: 165 TLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMAL-SGTSVPALAKAGAHCLDVLVSRNIPFSLLM--NGKHLYIMPRRFSD 484 T+ P L L+ WE ++++G +F+ V ET+ G ++ + +L +P+ +V+ V PF+ F+F ++L+F ++ ++E Q P D A+K V IN PI +L P + E PQ + D+ + L A E A RLG+NS GA ATINHLHFQ + + PIE+ P ++ +T G + + + ++P+R + G ++ LA + C L NIP+++L+ +GK ++++P+ +++ Sbjct: 62 TMEPPVDFLESLLLGEWEDRQQKG-LFRYDVTACETKVIPG-EYGFIAQLNEGRHLKKRPTEF---RVDKVLQPFDGSKFNFTKVGQEELLFQFEASDEDE---------------------VQLYPDAPID------AEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRI--DRDSFLLALHMAVE---------------AANPYFRLGYNSLGAFATINHLHFQAYYLA----VQFPIEKAPTQKISVT---GARVKISEMLNYPVRGLVFEGGNTLEDLANVVSDCCICLQENNIPYNVLISDSGKRIFLLPQCYAE 327
BLAST of NO01G03960 vs. NCBI_GenBank
Match: XP_019576183.1 (PREDICTED: GDP-L-galactose phosphorylase 1 [Rhinolophus sinicus]) HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12 Identity = 86/333 (25.83%), Postives = 150/333 (45.05%), Query Frame = 0 Query: 156 GAGSK-GL-QGTLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMAL-SGTSVPALAKAGAHCLDVLVSRNIPFSLLMN--GKHLYIMPRRFSD 484 GAG K G+ P L L+ WE + ++G +F+ V ET+ GK + + +L +P+ +V+ V F+ + F+F ++L+F +++ +D E C P+ +A V IN PI +L P + + PQ + +L + L AAE A RLG+NS GA ATINHLHFQ + + P+E+ P ++ M+T+ GV++S + +P+RS+ G+S+ L+ + L + NIPF++L++ GK +++MP+ +++ Sbjct: 53 GAGEKLGISHEAREPPVAFLESLVLGEWEDRFQRG-LFRYDVTACETKVIPGK-YGFVAQLNEGRHLKKRPTEF---RVDKVLQSFDGNKFNFTKVGQEELLFQFEVGEDGE------------------VQFFPCMPL---------DADNSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHK--SLLLALHMAAE---------------AANPYFRLGYNSLGAFATINHLHFQAYYLAMP----FPLEKAPSKK-MITTVSGVKIS--ELLSYPVRSLVFEGGSSMQDLSDTVSDACVCLQNNNIPFNILISDCGKQIFLMPQCYAE 329
BLAST of NO01G03960 vs. NCBI_GenBank
Match: PHT27561.1 (GDP-L-galactose phosphorylase 1, partial [Capsicum baccatum]) HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12 Identity = 82/322 (25.47%), Postives = 143/322 (44.41%), Query Frame = 0 Query: 165 TLNPNALTLGRLIKYIWEAKEKQGDIFKTSVKGAETRHSQGKDFPWACELYRNPGRASKPSSMAATQVNHVSIPFEEDIFSFLMAPSQDLMFWYQLPQDEEGGSXXXXXXXXXXXXXXXXXTTQCQPVERGDFAEREEAQKHQHGVFINPYPIGDLSGVLCPFIFEKRPQVLSDSLDALTVGLSFAAELLASNEAMDQEPRQTAKKTKLRLGFNSWGARATINHLHFQFWSFSDGPDGLIPIERLPLRQPMLTSFPGVELSVIGIKHHPIRSMAL-SGTSVPALAKAGAHCLDVLVSRNIPFSLLM--NGKHLYIMPRRFSD 484 T+ P L L+ WE ++++G +F+ V ET+ G ++ + +L +P+ +V+ V PF+ F+F ++L+F ++ ++E Q P D A+K V IN PI +L P + E PQ + D+ + L A E A RLG+NS GA ATINHLHFQ + + +PIE+ P Q M + GV++S + ++P+R + G ++ LA + C L NIP+++L+ +GK ++++P+ +++ Sbjct: 62 TMEPPVDFLESLLLGEWEDRQQKG-LFRYDVTACETKVIPG-EYGFIAQLNEGRHLKKRPTEF---RVDKVLQPFDGSKFNFTKVGQEELLFQFEASDEDE---------------------VQLYPDAPID------AEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRI--DRDSFLLALHMAVE---------------AANPYFRLGYNSLGAFATINHLHFQAYYLA----VQLPIEKAP-TQKMSVTDAGVKIS--EMLNYPVRGLVFEGGNTLEDLANVVSDCCICLQENNIPYNVLISDSGKRIFLLPQCYAE 327 The following BLAST results are available for this feature:
BLAST of NO01G03960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03960 ID=NO01G03960|Name=NO01G03960|organism=Nannochloropsis oceanica|type=gene|length=2220bpback to top protein sequence of NO01G03960.1 >NO01G03960.1-protein ID=NO01G03960.1-protein|Name=NO01G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bpback to top Synonyms
Publications
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