NO01G03370, NO01G03370 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03370 vs. NCBI_GenBank
Match: EWM29269.1 (rho gtpase-activating protein 12 [Nannochloropsis gaditana]) HSP 1 Score: 368.2 bits (944), Expect = 4.500e-98 Identity = 250/545 (45.87%), Postives = 296/545 (54.31%), Query Frame = 0 Query: 1 MGDQGPGHDPHKREHGHKKGSFLNKFFSRQGSIKFSGGGHGSCGAGNAEREEAAEGRASAPMRRSEENPYHYNRFHLPISPLGSSAPSFPSLRYLAGAGVRAAEGXXXXXXXXXXXXXXXXXXXRGEGKLNSQRLLNPLTPAAVAALKIALDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQEHEPLLGYHSYADFVSVG---AGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQLEKERAVIMDLIVLCPLLFPSDGMGGNKNGNKNKTHPPLKPFHAPRVIKSAPASRTPRHFFPLTDEVTRKTAPLS---ATGG--GDDDRDVPVFLKPPLKPLKR----LHEGTGSRNNSTTHAATTTINSHPK--------TSDCTGSESNSSVDDRSVCSALPRVAEARPNPLASTLPFRPPDKPERTSPR 526 MGD H+ H GHKKGSFLNK F+RQ S+K + G+G + E+ EGRAS+P R+ E + +RFH P SPL SS P F S+R AG V EG GE +L R L PLTPAA A++K ALD+LGSTALG EGLYRVSGNKLDVD LK ++A GLL S++ L+SHYPDKHV+AGAIKKVLQEHEPLL Y YADFV+ P NE + +EE KEGRYR LV L P R+LLGHL+RHL VA R E N+MT ENLAVT+GL+LLRKSESV VSI QLEKERAVIMDLI LCP+LFP+D K P KPFH PR +KSAP R HFF LTDE+ R+TAPLS A G G+ V LKPP KPL R L G+ SR SH DC + D ++ + +V+ P+ P PP KP RT+P+ Sbjct: 41 MGDDAYRHNTHHHHAGHKKGSFLNKLFARQSSLK-AAIGYGPSRGDHECSEKDDEGRASSPSRQQGE--HQGSRFHFPHSPLSSSTPIFSSIRTRAGTKV-GTEGLTGGRGGTREKSGAIRDCGTGEERLTG-RFLPPLTPAASASVKTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEES-----------------------------------GGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVLFPADAQASKKQA-------PAKPFHLPRSVKSAPPGREACHFFSLTDEMARRTAPLSMRTAEEGIDGEHCAGASVTLKPPPKPLGRPPNPLMTGSSSRQEHCLKMDHGRNRSHVNQGNMATGHVMDCAMNREEIRKKDLAIAPEVWKVSTGLPS-FPGISPQHPPAKPSRTTPQ 537
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_008305980.1 (PREDICTED: rho GTPase-activating protein 12 isoform X1 [Cynoglossus semilaevis] >XP_008305981.1 PREDICTED: rho GTPase-activating protein 12 isoform X1 [Cynoglossus semilaevis]) HSP 1 Score: 68.6 bits (166), Expect = 7.300e-8 Identity = 53/217 (24.42%), Postives = 91/217 (41.94%), Query Frame = 0 Query: 147 LKIALDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQLEKERAVIMDLI 363 +K+ +D++ +T L +GLYRVSGN + +L+ A D+ S + D HV GA+K +E EPL Y S+ DFV+ G+ + + I +DL+ +L + + + L +HLR V E N+MT +++A+ G LLR +++ + + + V + LI Sbjct: 669 VKMCIDHVENTGLSVDGLYRVSGNLAVIQKLR--FAVNHDEKLDLNDSKWEDIHVTTGALKMFFRELPEPLFTYGSFNDFVNAIKGTDYKQRLNSI------------------------------------------------KDLIKKLPKPNHDTMQSLFKHLRRVIDHGEANRMTTQSVAIVFGPTLLRPETETGNIAVHMVYQNQIVELILI 835
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_008305982.1 (PREDICTED: rho GTPase-activating protein 12 isoform X5 [Cynoglossus semilaevis]) HSP 1 Score: 68.6 bits (166), Expect = 7.300e-8 Identity = 53/217 (24.42%), Postives = 91/217 (41.94%), Query Frame = 0 Query: 147 LKIALDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQLEKERAVIMDLI 363 +K+ +D++ +T L +GLYRVSGN + +L+ A D+ S + D HV GA+K +E EPL Y S+ DFV+ G+ + + I +DL+ +L + + + L +HLR V E N+MT +++A+ G LLR +++ + + + V + LI Sbjct: 644 VKMCIDHVENTGLSVDGLYRVSGNLAVIQKLR--FAVNHDEKLDLNDSKWEDIHVTTGALKMFFRELPEPLFTYGSFNDFVNAIKGTDYKQRLNSI------------------------------------------------KDLIKKLPKPNHDTMQSLFKHLRRVIDHGEANRMTTQSVAIVFGPTLLRPETETGNIAVHMVYQNQIVELILI 810
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_016887270.1 (PREDICTED: rho GTPase-activating protein 12 isoform X2 [Cynoglossus semilaevis]) HSP 1 Score: 68.6 bits (166), Expect = 7.300e-8 Identity = 53/217 (24.42%), Postives = 91/217 (41.94%), Query Frame = 0 Query: 147 LKIALDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQLEKERAVIMDLI 363 +K+ +D++ +T L +GLYRVSGN + +L+ A D+ S + D HV GA+K +E EPL Y S+ DFV+ G+ + + I +DL+ +L + + + L +HLR V E N+MT +++A+ G LLR +++ + + + V + LI Sbjct: 668 VKMCIDHVENTGLSVDGLYRVSGNLAVIQKLR--FAVNHDEKLDLNDSKWEDIHVTTGALKMFFRELPEPLFTYGSFNDFVNAIKGTDYKQRLNSI------------------------------------------------KDLIKKLPKPNHDTMQSLFKHLRRVIDHGEANRMTTQSVAIVFGPTLLRPETETGNIAVHMVYQNQIVELILI 834
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_016887273.1 (PREDICTED: rho GTPase-activating protein 12 isoform X6 [Cynoglossus semilaevis]) HSP 1 Score: 68.6 bits (166), Expect = 7.300e-8 Identity = 53/217 (24.42%), Postives = 91/217 (41.94%), Query Frame = 0 Query: 147 LKIALDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQLEKERAVIMDLI 363 +K+ +D++ +T L +GLYRVSGN + +L+ A D+ S + D HV GA+K +E EPL Y S+ DFV+ G+ + + I +DL+ +L + + + L +HLR V E N+MT +++A+ G LLR +++ + + + V + LI Sbjct: 643 VKMCIDHVENTGLSVDGLYRVSGNLAVIQKLR--FAVNHDEKLDLNDSKWEDIHVTTGALKMFFRELPEPLFTYGSFNDFVNAIKGTDYKQRLNSI------------------------------------------------KDLIKKLPKPNHDTMQSLFKHLRRVIDHGEANRMTTQSVAIVFGPTLLRPETETGNIAVHMVYQNQIVELILI 809
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_017502817.1 (PREDICTED: minor histocompatibility protein HA-1 isoform X1 [Manis javanica]) HSP 1 Score: 68.2 bits (165), Expect = 9.500e-8 Identity = 73/285 (25.61%), Postives = 114/285 (40.00%), Query Frame = 0 Query: 158 ALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQL---EKERAVIMDLIVLCPLLFPS--DGMGGNKNGNKNKTHPPLKPFHAPRVIKSAPASRTPRHFFPLTDEVTRKTAPLSATGGGDDDRDV 437 AL +G+YRV+G K V++L AG ++++ H I+ +K L++ EPL+ + Y + V L +D + E E GR R+L+ L P +R L +LLRHLR + ++NKMT NL + G +LLR + A VS+ L + V+ LI L+F +G+ G ++G N+ A V++ + FPL EV S D D D+ Sbjct: 793 ALHTKGIYRVNGVKTRVEKLCQAFEAG----EELVELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVG--------LAKDSLKAEAEA------------------KAVSRGRPDVAESEAAAVAMAGRLRELLQDLPPENRASLQYLLRHLRRIVEVEQDNKMTPGNLGIVFGPSLLRPRPTEATVSLSSLVDYPHQARVVETLITHYGLVFEEEPEGVPGGQDGTYNQ--------QAEVVVQMPYLEASEGAAFPL-QEVAEDGGQGSRVASNDSDSDL 1038
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_017502818.1 (PREDICTED: minor histocompatibility protein HA-1 isoform X2 [Manis javanica]) HSP 1 Score: 68.2 bits (165), Expect = 9.500e-8 Identity = 73/285 (25.61%), Postives = 114/285 (40.00%), Query Frame = 0 Query: 158 ALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQL---EKERAVIMDLIVLCPLLFPS--DGMGGNKNGNKNKTHPPLKPFHAPRVIKSAPASRTPRHFFPLTDEVTRKTAPLSATGGGDDDRDV 437 AL +G+YRV+G K V++L AG ++++ H I+ +K L++ EPL+ + Y + V L +D + E E GR R+L+ L P +R L +LLRHLR + ++NKMT NL + G +LLR + A VS+ L + V+ LI L+F +G+ G ++G N+ A V++ + FPL EV S D D D+ Sbjct: 789 ALHTKGIYRVNGVKTRVEKLCQAFEAG----EELVELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVG--------LAKDSLKAEAEA------------------KAVSRGRPDVAESEAAAVAMAGRLRELLQDLPPENRASLQYLLRHLRRIVEVEQDNKMTPGNLGIVFGPSLLRPRPTEATVSLSSLVDYPHQARVVETLITHYGLVFEEEPEGVPGGQDGTYNQ--------QAEVVVQMPYLEASEGAAFPL-QEVAEDGGQGSRVASNDSDSDL 1034
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_017502819.1 (PREDICTED: minor histocompatibility protein HA-1 isoform X3 [Manis javanica]) HSP 1 Score: 68.2 bits (165), Expect = 9.500e-8 Identity = 73/285 (25.61%), Postives = 114/285 (40.00%), Query Frame = 0 Query: 158 ALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQL---EKERAVIMDLIVLCPLLFPS--DGMGGNKNGNKNKTHPPLKPFHAPRVIKSAPASRTPRHFFPLTDEVTRKTAPLSATGGGDDDRDV 437 AL +G+YRV+G K V++L AG ++++ H I+ +K L++ EPL+ + Y + V L +D + E E GR R+L+ L P +R L +LLRHLR + ++NKMT NL + G +LLR + A VS+ L + V+ LI L+F +G+ G ++G N+ A V++ + FPL EV S D D D+ Sbjct: 787 ALHTKGIYRVNGVKTRVEKLCQAFEAG----EELVELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVG--------LAKDSLKAEAEA------------------KAVSRGRPDVAESEAAAVAMAGRLRELLQDLPPENRASLQYLLRHLRRIVEVEQDNKMTPGNLGIVFGPSLLRPRPTEATVSLSSLVDYPHQARVVETLITHYGLVFEEEPEGVPGGQDGTYNQ--------QAEVVVQMPYLEASEGAAFPL-QEVAEDGGQGSRVASNDSDSDL 1032
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_017502821.1 (PREDICTED: minor histocompatibility protein HA-1 isoform X4 [Manis javanica]) HSP 1 Score: 68.2 bits (165), Expect = 9.500e-8 Identity = 73/285 (25.61%), Postives = 114/285 (40.00%), Query Frame = 0 Query: 158 ALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQL---EKERAVIMDLIVLCPLLFPS--DGMGGNKNGNKNKTHPPLKPFHAPRVIKSAPASRTPRHFFPLTDEVTRKTAPLSATGGGDDDRDV 437 AL +G+YRV+G K V++L AG ++++ H I+ +K L++ EPL+ + Y + V L +D + E E GR R+L+ L P +R L +LLRHLR + ++NKMT NL + G +LLR + A VS+ L + V+ LI L+F +G+ G ++G N+ A V++ + FPL EV S D D D+ Sbjct: 783 ALHTKGIYRVNGVKTRVEKLCQAFEAG----EELVELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVG--------LAKDSLKAEAEA------------------KAVSRGRPDVAESEAAAVAMAGRLRELLQDLPPENRASLQYLLRHLRRIVEVEQDNKMTPGNLGIVFGPSLLRPRPTEATVSLSSLVDYPHQARVVETLITHYGLVFEEEPEGVPGGQDGTYNQ--------QAEVVVQMPYLEASEGAAFPL-QEVAEDGGQGSRVASNDSDSDL 1028
BLAST of NO01G03370 vs. NCBI_GenBank
Match: XP_007560736.1 (PREDICTED: rho GTPase-activating protein 12 isoform X3 [Poecilia formosa]) HSP 1 Score: 67.4 bits (163), Expect = 1.600e-7 Identity = 54/219 (24.66%), Postives = 93/219 (42.47%), Query Frame = 0 Query: 147 LKIALDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQE-HEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQLEKERAVIMDLIVL 365 +K+ +D++ +T L +GLYRVSGN + +L+ A D+ S + D HV GA+K +E EPL Y S+ DFV+ S + + + +DL+ +L + + + L RHLR V E N+MT +++A+ G LLR +++ + + + I++LI+L Sbjct: 669 VKMCMDHVENTGLSVDGLYRVSGNLAVIQKLR--FAVNHDEKVDLNDSKWEDIHVTTGALKMFFRELPEPLFTYGSFNDFVNAIKCSDYKQRVNSV------------------------------------------------KDLIKKLPKPNHDTMQALFRHLRRVIEHGEANRMTTQSVAIVFGPTLLRPETETGNIAVHMVYQNQ--IVELILL 835 The following BLAST results are available for this feature:
BLAST of NO01G03370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03370 ID=NO01G03370|Name=NO01G03370|organism=Nannochloropsis oceanica|type=gene|length=2366bpback to top protein sequence of NO01G03370.1 >NO01G03370.1-protein ID=NO01G03370.1-protein|Name=NO01G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bpback to top Synonyms
Publications
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