NO01G02970, NO01G02970 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G02970 vs. NCBI_GenBank
Match: EWM29226.1 (zinc cchc domain containing 17 [Nannochloropsis gaditana]) HSP 1 Score: 237.7 bits (605), Expect = 8.700e-59 Identity = 133/218 (61.01%), Postives = 153/218 (70.18%), Query Frame = 0 Query: 105 LPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERD-QARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTPAWMTKQGLSLDDA 322 +P +GKIYEGEVVK ESYGAFVRIPGFQRQGLVHISQL++GRTE+VDDV+ TGHKVFVKVVEV + G A +VSLSMRYA Q TG+DLDP NE +RD XXXXXXLQP GKIE+GA++N C KC V GHMPFECRG+ +GKSYGLIGDDEF+ALTRQ +LTPAWM++QGLSL+ A Sbjct: 132 IPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNE--GGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDXXXXXXXXXXXXXLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQ--------------PNQQKPSLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGA 333
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_022091743.1 (nucleolar protein of 40 kDa-like [Acanthaster planci]) HSP 1 Score: 126.3 bits (316), Expect = 2.800e-25 Identity = 67/160 (41.88%), Postives = 99/160 (61.88%), Query Frame = 0 Query: 106 PTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSAL 266 P + I++GEVV +SYGAFV IPGF + GLVH +Q+ R E V +V+ G +VF KV+ + G + SK+SLSM++ DQ G+DLDP+ + ++++ R +QP KIELGAV N C KCG GH+ +C + K+Y L+ D++ + L Sbjct: 21 PELYSIFDGEVVSIQSYGAFVNIPGFHKNGLVHKTQISSARVEDVSEVLALGDRVFCKVISL---GEDDNSKISLSMKFVDQGQGKDLDPNLVQMKQEEQR--RKKGRTFVQP--KIELGAVFNTVCKKCGTKGHLAKDCFQMPGTKTYDLLPDEDDAVL 173
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_019628516.1 (PREDICTED: nucleolar protein of 40 kDa-like [Branchiostoma belcheri]) HSP 1 Score: 118.2 bits (295), Expect = 7.700e-23 Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = 0 Query: 105 LPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDE 262 LP + I++GEVV + YG F++IPG ++ GLVH SQ+ R E +VV G +V+ KV+ + E G G K+SLSM+ +Q G DLDP+N ++ R R KI LGAV+N C KCG GHM +C +GK Y L+ +++ Sbjct: 19 LPAMHTIFQGEVVSLQPYGCFIKIPGCKKNGLVHKSQMSASRVEDPKEVVDMGDRVYCKVISLGEGGNG---KISLSMKVVNQGDGHDLDPNNVAISMEEQR----KRNPKSYERQKITLGAVLNTTCRKCGGKGHMAQDCFSGADGKKYELLPEED 168
BLAST of NO01G02970 vs. NCBI_GenBank
Match: CBN75014.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 117.9 bits (294), Expect = 1.000e-22 Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 0 Query: 108 VGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQAR----GGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFEC--RGVVEGKSYGLIGDDE 262 V +++GEVVKTE++GAF+++ G+++ GLVH SQ+ R E V DV G V+ KV+EV + +++LSM+ +Q G+DLDP N + E D R GGG R ++L AV N C KCGV GH+ +C RG GK Y L+ +++ Sbjct: 237 VFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGGG--------DRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRG---GKKYELVDEED 385
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_010795154.1 (PREDICTED: LOW QUALITY PROTEIN: nucleolar protein of 40 kDa [Notothenia coriiceps]) HSP 1 Score: 117.9 bits (294), Expect = 1.000e-22 Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 0 Query: 105 LPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQ 269 LP + I +GEVV ++YGAFVR+PG++++GLVH+S++ R E ++V G K+++KV+ + Q G+ K+S SM+ +Q TG+DLDP+N ++DQ R +I L AV+N C KCG GH +C G Y L+ ++E +A +Q Sbjct: 17 LPPLHSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDMGEKIWIKVIGREIQ--GDKVKLSFSMKAVNQGTGQDLDPNNVNGDQDQRR----RRKFRDHTGNRITLEAVLNTTCSKCGCKGHFTKDCFS-TPGLQYALVPEEEDAASRQQ 173
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_011666385.1 (PREDICTED: uncharacterized protein DDB_G0283697 isoform X2 [Strongylocentrotus purpuratus]) HSP 1 Score: 117.1 bits (292), Expect = 1.700e-22 Identity = 65/164 (39.63%), Postives = 98/164 (59.76%), Query Frame = 0 Query: 106 PTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQL-REGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQ 269 P + IY+GEV +SYGAFV++ G+++ GLVH SQ+ R R E V +V+ G V+ KV+ + G E K+SLSM+ +Q G+DLDP+ + ++++ R P+ KIELGAV+N C KCG +GH+ +C K+Y LI D + S L+ + Sbjct: 5 PALYNIYKGEVASIQSYGAFVKLDGYKKNGLVHKSQISRTKRVEDVSEVLSVGDIVWSKVISL---GEDEEMKISLSMKVVNQDNGQDLDPNMVQTKQEEQR----RKKGSYVPKPKIELGAVLNTTCRKCGTVGHLSKDCFYTPGEKTYDLIPDIDVSMLSHK 161
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_787656.3 (PREDICTED: DEAD-box ATP-dependent RNA helicase 42 isoform X1 [Strongylocentrotus purpuratus]) HSP 1 Score: 117.1 bits (292), Expect = 1.700e-22 Identity = 65/164 (39.63%), Postives = 98/164 (59.76%), Query Frame = 0 Query: 106 PTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQL-REGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQ 269 P + IY+GEV +SYGAFV++ G+++ GLVH SQ+ R R E V +V+ G V+ KV+ + G E K+SLSM+ +Q G+DLDP+ + ++++ R P+ KIELGAV+N C KCG +GH+ +C K+Y LI D + S L+ + Sbjct: 5 PALYNIYKGEVASIQSYGAFVKLDGYKKNGLVHKSQISRTKRVEDVSEVLSVGDIVWSKVISL---GEDEEMKISLSMKVVNQDNGQDLDPNMVQTKQEEQR----RKKGSYVPKPKIELGAVLNTTCRKCGTVGHLSKDCFYTPGEKTYDLIPDIDVSMLSHK 161
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_013404653.1 (nucleolar protein of 40 kDa [Lingula anatina]) HSP 1 Score: 116.7 bits (291), Expect = 2.200e-22 Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 0 Query: 105 LPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQ 269 LP + I++GE+ + YGAFV+IPG ++QGLVH SQL + R + +VV G V+ KV+ + E K+ LSM+ +Q TG+DLDP+ + +D R + + KIELGAV++ C KCG GH+ +C + KSY L+ +D + ++ Sbjct: 20 LPDLYSIFKGEISSVQPYGAFVKIPGLKKQGLVHKSQLSQSRVDNPAEVVDVGESVYCKVITL------ENDKIGLSMKVVNQGTGKDLDPNQVQSSQDAQR----RKQGFISKQDKIELGAVLDTTCRKCGGKGHLSQDCFHIPGQKSYELLTEDPLETVIKE 173
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_006811783.1 (PREDICTED: nucleolar protein of 40 kDa-like isoform X1 [Saccoglossus kowalevskii]) HSP 1 Score: 116.3 bits (290), Expect = 2.900e-22 Identity = 60/158 (37.97%), Postives = 91/158 (57.59%), Query Frame = 0 Query: 104 TLPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDE 262 T+P + ++ GEV + YGAF++IP ++ GLVH S + R E V DV+ G KV+ KV+ + ++G + K+SLSM+ +Q G DLDP+ + +D+ R KIELG V+N C KCG GH+ +C + GKSY L+ +D+ Sbjct: 12 TVPELYSVFAGEVTSIQQYGAFIKIPRCKKNGLVHKSHISNSRVEDVSDVLALGDKVYCKVISLGDEGDDKV-KISLSMKNINQDDGTDLDPNQVQLVQDEKR----RKKSGTYIPEKIELGVVLNTTCRKCGCKGHLAQDCFKIPGGKSYELLPEDD 164
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_006811784.1 (PREDICTED: nucleolar protein of 40 kDa-like isoform X2 [Saccoglossus kowalevskii]) HSP 1 Score: 116.3 bits (290), Expect = 2.900e-22 Identity = 60/158 (37.97%), Postives = 91/158 (57.59%), Query Frame = 0 Query: 104 TLPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDE 262 T+P + ++ GEV + YGAF++IP ++ GLVH S + R E V DV+ G KV+ KV+ + ++G + K+SLSM+ +Q G DLDP+ + +D+ R KIELG V+N C KCG GH+ +C + GKSY L+ +D+ Sbjct: 12 TVPELYSVFAGEVTSIQQYGAFIKIPRCKKNGLVHKSHISNSRVEDVSDVLALGDKVYCKVISLGDEGDDKV-KISLSMKNINQDDGTDLDPNQVQLVQDEKR----RKKSGTYIPEKIELGVVLNTTCRKCGCKGHLAQDCFKIPGGKSYELLPEDD 164 The following BLAST results are available for this feature:
BLAST of NO01G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G02970 ID=NO01G02970|Name=NO01G02970|organism=Nannochloropsis oceanica|type=gene|length=1944bpback to top protein sequence of NO01G02970.1 >NO01G02970.1-protein ID=NO01G02970.1-protein|Name=NO01G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bpback to top Synonyms
Publications
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