NO01G02460, NO01G02460 (gene) Nannochloropsis oceanica

Overview
NameNO01G02460
Unique NameNO01G02460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2437
Alignment locationchr1:639723..642159 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:639723..642159 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02460.4NO01G02460.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G02460.3NO01G02460.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G02460.2NO01G02460.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G02460.1NO01G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668306gene_239Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02460.4NO01G02460.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G02460.3NO01G02460.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G02460.2NO01G02460.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G02460.1NO01G02460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02460 ID=NO01G02460|Name=NO01G02460|organism=Nannochloropsis oceanica|type=gene|length=2437bp
ATGTTGGACAACAGCTCCTACACTACCATGATGGTAGATTCCCAGgtgca
gtagaatgttttcccctcctcccaagaaccgaggcaagcgtgcgtggcac
atggctgttttgtttactgccgccgcacccacctaccccccccccctccg
ttccctccttcctacccacccatgcgccacacaccacacacccacagCTG
ATTCCCCCGCGCGTCAGCCTGGAGGTGAACGACAGTATCGTGGCCACACC
AAAGGGACAGGAGGGCGCCGAGGCAGGCGTGCGTGGCACGCGGCTgtttt
gtttactgccgccgcacccacctattctccccccccctccgttccctcct
ttctacccacccattcaccgcgactgcaacttacattttgccattgtgcc
aaggacaacaccacaacctccattagagccgtcacaattcctctctattt
catcccctcccccccccccccctcctcaaaccacagACAAAGGTACACCT
CGATTGCGGGCAGCGTCTCAACCCAATTGCGAGAAGGGCAGAAGGAGAAG
GAGGTGAAGGAGGAGAAGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGA
GGTGGTGGAGGAGGAGGAGGTGgtggaggaggaggaggagaagggggagg
aggatgagGTGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGTGGTGGAG
GAGGAGGAGGTGGTGGAGGAGGAGGAGAAGAAGGGGGAGGAGGCGGAGCA
GGAGAAGAAGGGGAGGAAGAAGAAGACGAACAAGGAGAAGAAGGAGGAGA
GGAAGAGGTAAAAGAGGAAGAAGAATAAGAGGAAGAGGAAGAAGAGGAAG
AGGAAGAGGAAGAAGAGGAAGGAGAAGAAGAAAAAGAAGAGGAAGAAGAA
GAAGAAGAGGAGGCGGAGGCGGAGGAGGACGAGGACGAGGAAGAGGAGGT
CACGGGCGAGCCATCTGAGGACTGTACTGGTGTGACACCTGTGAACAGTT
CGTGTCCCGTGACGGCAATGGGGCACGTAGTATTCTGTGGGTGTACAGGA
GTATGGTCCGTGGGGAAGCTCGTCCCCATGATCTTCGGTTTGGTCAACCG
CGGCAGGATATGCGGACACTCTATGTGTAGCCTTCCTCGCTGACCTCCTC
TTTTATCCTCCTTCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGG
ACTTTGCCAGGTCAAAAAAACTGTCAAAGTCGCTAGAAAGACTCGGACGA
GGAATAGGGGATGACAACAATTTCTTGTTGGAAGGCTCCCCCTCGTATGC
AAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGATGTAGG
AGCGCTCGAAAGAACTATCCAGGCCGACACTCTATTCTATTGTCTATTGC
TATTGTGGAGAGAAACACACTGTCATGGACAGGGCGCTCAGATATTATGC
ACTTAATCCCGCGACAAAAAAACCTCCTGCCTCGACTTCTTGGAGCTTTC
GTCCACATGATCAAGCATTGCATTTGCACCATGCCAACGCCCCTGCATCT
GGTCATATTCCTCTTCGTCCTGCACGTAGTGATGTCTCTGTCGCCTGCGA
TCTGTGCCTTCGAGTCTTCGGCTGCAACCACCATCCGCAGgtgagtgact
agctggatggtgggggaggattcgtcgttcgacaagaagtacatatagca
agcaaccttacgccgttaccggacttgaacagtttgttcacttgcaccgc
catttccctgcggtcagctagcggcttgctgcgccccaggggaagaggga
gaggcgacagcttgccacgattgctgggtcggtcttctacctttgcgtgc
ctcctatacccacctatgccatgggggtctgatctaattttatcatggtg
ctgcacctgtatttttcttaggacagacgccttccacatgcatctctagc
atggtaggtgggtgtatgtagtctctgctgttttcctctacccacctcct
cttcgcgtgttaccaattctcccccacgcccgagacaaacaacccattcc
ttggcacaagctttgtctacacagcaatagacacaaaacttcttgactgg
aatgggtaagaacgaaattagattcctttcaataacaaaccacatggaag
ctaatccctcttccttgcggcggtcggaaggataaattctttttctagag
atgagctcgcgttcatacttgcccgacacccgattcgttcacttttccgt
tattatggtaaccttgatgttaacaatatttctccaacccaaaaaaaagG
TAGTTAGACGGCCATCACATCAGCCTGGGCCCATGTGAGTCGTGGATTAG
CACTTGAGAACCTCCCTTAAGGTGAGAAAGTATATGCCTTGCTTAGTAGG
CACGCCATTGAGCGGAAGAAAAACGATAATCTTCCTT
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protein sequence of NO01G02460.4

>NO01G02460.4-protein ID=NO01G02460.4-protein|Name=NO01G02460.4|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MLDNSSYTTMMVDSQLIPPRVSLEVNDSIVATPKGQEGAEAGVRGTRLQR
YTSIAGSVSTQLREGQKEKEVKEEKEVVEEEEEEEEVVEEEEVVEEEEVV
EEEEVVEEEEVVEEEEKKGEEAEQEKKGRKKKTNKEKKEERKR*
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protein sequence of NO01G02460.3

>NO01G02460.3-protein ID=NO01G02460.3-protein|Name=NO01G02460.3|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MLDNSSYTTMMVDSQLIPPRVSLEVNDSIVATPKGQEGAEAGVRGTRLQR
YTSIAGSVSTQLREGQKEKEVKEEKEVVEEEEEEEEVVEEEEVVEEEEEK
GEEDEVEEEEVVEEEEVVEEEEVVEEEEKKGEEAEQEKKGRKKKTNKEKK
EERKR*
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protein sequence of NO01G02460.2

>NO01G02460.2-protein ID=NO01G02460.2-protein|Name=NO01G02460.2|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MLDNSSYTTMMVDSQLIPPRVSLEVNDSIVATPKGQEGAEAGVRGTRLQR
YTSIAGSVSTQLREGQKEKEVKEEKEVVEEEEEEEEVVEEEEVVEEEEVV
EEEEVVEEEEVVEEEEKKGEEAEQEKKGRKKKTNKEKKEERKR*
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protein sequence of NO01G02460.1

>NO01G02460.1-protein ID=NO01G02460.1-protein|Name=NO01G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MLDNSSYTTMMVDSQLIPPRVSLEVNDSIVATPKGQEGAEAGVRGTRLQR
YTSIAGSVSTQLREGQKEKEVKEEKEVVEEEEEEEEVVEEEEVVEEEEVV
EEEEVVEEEEVVEEEEKKGEEAEQEKKGRKKKTNKEKKEERKR*
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Synonyms
Publications