NO01G01740, NO01G01740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01740 vs. NCBI_GenBank
Match: EWM29062.1 (rab11 family gtpase [Nannochloropsis gaditana]) HSP 1 Score: 421.0 bits (1081), Expect = 2.300e-114 Identity = 212/220 (96.36%), Postives = 216/220 (98.18%), Query Frame = 0 Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSSNPPQNKAAASFQQCCK 221 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKA DGK+IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEE+RLAFIETSALDASGVDTAFHRILTEIH+LLSKKSMAGN+GGFGQAIG GQKIALSSNPP NKA ASFQQCCK Sbjct: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCCK 220
BLAST of NO01G01740 vs. NCBI_GenBank
Match: GAX29097.1 (Ras-related protein Rab-11A [Fistulifera solaris] >GAX16578.1 Ras-related protein Rab-11A [Fistulifera solaris]) HSP 1 Score: 312.4 bits (799), Expect = 1.100e-81 Identity = 161/219 (73.52%), Postives = 181/219 (82.65%), Query Frame = 0 Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSSNPPQNKAAASFQQCC 220 M DE YDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E+H LAFIETSALDASGVDTAF RILTEI+ L+S+++M E G ++ GQ I+LS + K CC Sbjct: 1 MGSRVDEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHPTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMQAEEAAAGSSLSAGQTISLSDGGKKKKG------CC 212
BLAST of NO01G01740 vs. NCBI_GenBank
Match: EJK46971.1 (hypothetical protein THAOC_34340 [Thalassiosira oceanica]) HSP 1 Score: 310.8 bits (795), Expect = 3.300e-81 Identity = 162/221 (73.30%), Postives = 185/221 (83.71%), Query Frame = 0 Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSS-NPPQNKAAASFQQCCK 221 M DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+ +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E+H LAFIETSALDASGVDT+F RILTEI+ L+S+++MA EGG + GQ I+L++ N P+ + CC+ Sbjct: 1 MGSRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHSTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTSFQRILTEIYRLMSRRNMAAEEGGNQPQLSTGQTISLNNDNKPR-------RNCCQ 213
BLAST of NO01G01740 vs. NCBI_GenBank
Match: CBN78685.1 (Rab11A, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 310.1 bits (793), Expect = 5.700e-81 Identity = 162/219 (73.97%), Postives = 187/219 (85.39%), Query Frame = 0 Query: 4 GKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSS--NPPQNKAAASFQQCCK 221 GK++ YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+ +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK VTF+NVERWLKELR+HA+ +IVVML+GNKSDLRHLRTV E+AM FA++H LAF+ETSALDASGVD+AF RILTEI+ L+S+K++A N G + G+ IALSS + N++ +S CK Sbjct: 3 GKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLIGNKSDLRHLRTVTHEEAMEFAKKHNLAFLETSALDASGVDSAFQRILTEIYRLMSRKTIAANT-ATGPDLSRGETIALSSARDDASNRSKSSCAGSCK 219
BLAST of NO01G01740 vs. NCBI_GenBank
Match: XP_002296252.1 (rab-type small GTPase [Thalassiosira pseudonana CCMP1335] >ACI64969.1 rab-type small GTPase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 309.7 bits (792), Expect = 7.400e-81 Identity = 162/221 (73.30%), Postives = 185/221 (83.71%), Query Frame = 0 Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSSNPPQNKAAASFQQCCKS 222 MA DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+ +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E+H LAFIETSALDASGVDTAF RILTEI+ L+S+++MA +G + GQ I+L++ +NK + CC + Sbjct: 1 MATRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQT-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMAAEDGANAPQLSSGQTISLNA---ENKPR---RNCCNN 214
BLAST of NO01G01740 vs. NCBI_GenBank
Match: OQR91404.1 (Rab11 family GTPase [Thraustotheca clavata]) HSP 1 Score: 307.4 bits (786), Expect = 3.700e-80 Identity = 159/219 (72.60%), Postives = 181/219 (82.65%), Query Frame = 0 Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSSNPPQNKAAASFQQCC 220 M KD+ YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K TFDNVERWLKELR+HAD + V+MLVGNKSDLRHLR V TE+AM FAE+H LAF+ETSALDA+GVDTAF RILTEI+ L+S+K+M G A+ G KI ++++ A A + C Sbjct: 1 MGSTKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHPTFDNVERWLKELRDHADANTVIMLVGNKSDLRHLRAVQTEEAMAFAEKHNLAFLETSALDATGVDTAFQRILTEIYNLMSRKTMQAQGTGATAALPTGNKIEITADNTAAAAKAKKKSTC 218
BLAST of NO01G01740 vs. NCBI_GenBank
Match: XP_002185343.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43212.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 306.2 bits (783), Expect = 8.200e-80 Identity = 161/219 (73.52%), Postives = 181/219 (82.65%), Query Frame = 0 Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSSNPPQNKAAASFQQCC 220 MA DE YDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR V T++AM F+E+H LAFIETSALDASGVDTAF RILTEI+ L+S+++M E + G KI+LS + + K CC Sbjct: 1 MASRVDEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMQAEENA-NAPMSAGHKISLSQSGDKKKG------CC 211
BLAST of NO01G01740 vs. NCBI_GenBank
Match: XP_008874506.1 (hypothetical protein H310_10046 [Aphanomyces invadans] >ETV96729.1 hypothetical protein H310_10046 [Aphanomyces invadans]) HSP 1 Score: 305.8 bits (782), Expect = 1.100e-79 Identity = 163/224 (72.77%), Postives = 186/224 (83.04%), Query Frame = 0 Query: 1 MAGGK-DETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSSNPPQNKAAASFQQ----CC 220 MA GK DE YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K TF+NVERWLKELR+HAD + V+MLVGNKSDLRHLR V TE+AM FAE+H LAF+ETSALDA+GVDTAF RILTEI+ L+S+K+M E ++ +G KI ++S+ AAA + CC Sbjct: 1 MATGKADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHPTFENVERWLKELRDHADANTVIMLVGNKSDLRHLRAVQTEEAMAFAEKHNLAFLETSALDATGVDTAFQRILTEIYNLMSRKTMQAEE--HSASLPQGNKIEINSDNAPTAAAAKGSKKKSACC 221
BLAST of NO01G01740 vs. NCBI_GenBank
Match: AFA52576.1 (Rab11 family GTPase [Vaucheria litorea]) HSP 1 Score: 305.1 bits (780), Expect = 1.800e-79 Identity = 160/216 (74.07%), Postives = 183/216 (84.72%), Query Frame = 0 Query: 3 GGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSSNPPQNKAAASFQQC 219 G KDE YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN+ESKSTIGVEFATKSI+ + KIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+K TF+N ERWLKELR+HA+ +IVVMLVGNK DLRHLRTV E+A FAE++ LAFIETSALD+SGVDTAF +ILTEI+ L++KK M+GN G IG+G++IAL+S +KA+ C Sbjct: 56 GAKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNMESKSTIGVEFATKSIQT-ENKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHSTFENAERWLKELRDHAESNIVVMLVGNKCDLRHLRTVSVEEAKEFAEKNSLAFIETSALDSSGVDTAFQQILTEIYKLMNKKQMSGN-GNNSLNIGQGERIALNSG--GDKASGDGSAC 267
BLAST of NO01G01740 vs. NCBI_GenBank
Match: OEU08538.1 (hypothetical protein FRACYDRAFT_174052, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 304.3 bits (778), Expect = 3.100e-79 Identity = 158/209 (75.60%), Postives = 183/209 (87.56%), Query Frame = 0 Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMA--GNEGGFGQ--AIGEGQKIALSSN 206 MA DE YDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSI+A +GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISK TF+NVERWLKELR+HA+ +IVVMLVGNKSDLRHLR+V T++AM F+E+H LAFIETSALD+SGVDTAF RILTEI+ L+S++++A G+ G G ++ G I+L++N Sbjct: 1 MAARVDEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQA-EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRSVETDEAMSFSEQHNLAFIETSALDSSGVDTAFQRILTEIYRLMSRRNVAAEGDNSGSGNNPSLSAGTSISLNNN 208 The following BLAST results are available for this feature:
BLAST of NO01G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01740 ID=NO01G01740|Name=NO01G01740|organism=Nannochloropsis oceanica|type=gene|length=4538bpback to top protein sequence of NO01G01740.1 >NO01G01740.1-protein ID=NO01G01740.1-protein|Name=NO01G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bpback to top Synonyms
Publications
|