NO01G01290, NO01G01290 (gene) Nannochloropsis oceanica

Overview
NameNO01G01290
Unique NameNO01G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length336
Alignment locationchr1:329839..330174 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:329839..330174 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO01G01290 vs. NCBI_GenBank
Match: EWM29091.1 (hypothetical protein Naga_100024g11 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 5.100e-46
Identity = 82/111 (73.87%), Postives = 99/111 (89.19%), Query Frame = 0
Query:    1 MVEKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTKQILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            +VE+D W+YHT+RE +EG +EEV+GRAMVCCVFVC +WKAAG+ GE   EINCGELTNADDVMLA+FRGD +QILG+W+MFLP+FN K+PF HMDEKCP+LGPAY+QP DC
Sbjct:  557 IVEEDVWLYHTSRERREGGREEVLGRAMVCCVFVCGIWKAAGLFGEASEEINCGELTNADDVMLALFRGDMRQILGKWKMFLPSFNFKKPFPHMDEKCPSLGPAYQQPLDC 667          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: CEP00268.1 (hypothetical protein PBRA_008002 [Plasmodiophora brassicae])

HSP 1 Score: 111.7 bits (278), Expect = 1.500e-21
Identity = 57/129 (44.19%), Postives = 73/129 (56.59%), Query Frame = 0
Query:    1 MVEKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIF------------------RGDTKQILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            +VE+D ++Y+TTR  K        GR+MVCCVFVCA+WKAAG+ G+  GEINC E TN D   LA+F                    D  Q+LG  ++ L   N K PF HM E CP++GPAY +P  C
Sbjct:  453 LVERDSFVYNTTRFGKPAR-----GRSMVCCVFVCAVWKAAGLFGQHAGEINCAEFTNLDVYALAVFDESRMKDGRPQACKDADPDNDHCQLLGTSQLRLEHVNSKDPFPHMSENCPSVGPAYLRPASC 576          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: CEM33381.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 95.1 bits (235), Expect = 1.400e-16
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 0
Query:    3 EKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTKQILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            E+D W YHT R    G +E V+  A VC  FVC+M+KA G+ G     INC E+ N D   L ++    +Q++G   M L  FN + P  HM E+CP+  P Y++P DC
Sbjct:  521 EQDHWTYHTKR---NGVEEAVVAPARVCSTFVCSMYKAGGLFGRLADSINCAEVHNFDLYSLTLYADGPRQVMGGHVMQLNEFNSRPPHPHMAERCPSRPPLYQRPLDC 626          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: CUG91493.1 (Hypothetical protein, putative [Bodo saltans])

HSP 1 Score: 87.8 bits (216), Expect = 2.300e-14
Identity = 51/131 (38.93%), Postives = 69/131 (52.67%), Query Frame = 0
Query:    1 MVEKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTK-------------------QILGEWEMFL-PAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            +VE+DDW+Y+TT+          +G++MVCCVFVC +WKAAGV G    EI C E T  D   + IF  D K                   Q+ G + + L P  N +  +AHM E+C +LGPAY + P C
Sbjct:  500 IVERDDWLYNTTK-----VGVPAVGKSMVCCVFVCNIWKAAGVFGNLTNEIQCAEQTLWDIFSMQIF-DDAKMGNGRPDICKQYDPTNQLCQLTGNFTLNLKPDVNTRPLYAHMGERCSSLGPAYIREPGC 624          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: KZV50677.1 (hypothetical protein F511_29281 [Dorcoceras hygrometricum])

HSP 1 Score: 80.9 bits (198), Expect = 2.800e-12
Identity = 44/125 (35.20%), Postives = 62/125 (49.60%), Query Frame = 0
Query:    3 EKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTK----------------QILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            E+D+W+Y               G++  C  F+ AM+KAAGV G     I   E T  D  ML IF  +                  QILGE++M LP++N  +P+A+M+E CP+L P YE+P  C
Sbjct:  412 EQDEWVYSD-------------GKSTTCVAFILAMYKAAGVFGPVSNSIQVTEFTIRDAYMLKIFENNRTNLPHWCNNDEDQLPFCQILGEYKMELPSYNTLEPYANMNENCPSLPPTYERPARC 523          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: PSS13564.1 (Leucine--tRNA ligase [Actinidia chinensis var. chinensis])

HSP 1 Score: 80.1 bits (196), Expect = 4.800e-12
Identity = 45/125 (36.00%), Postives = 60/125 (48.00%), Query Frame = 0
Query:    3 EKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTK----------------QILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            E+DDW+Y               G++  C  F+ AM+K AGV G     I   E T  D  ML IF  +                  QILGE++M LP +N  QP+A+M+E CP+L P YE+P  C
Sbjct:  409 EQDDWVYSD-------------GKSTTCVAFILAMYKEAGVFGPISESIQVTEFTIRDAYMLKIFENNQTRLPSWCNNEVDQLPFCQILGEYQMELPEYNTLQPYANMNENCPSLPPTYERPARC 520          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: XP_012847627.1 (PREDICTED: uncharacterized protein LOC105967570 [Erythranthe guttata] >EYU28651.1 hypothetical protein MIMGU_mgv1a004456mg [Erythranthe guttata])

HSP 1 Score: 79.7 bits (195), Expect = 6.300e-12
Identity = 46/125 (36.80%), Postives = 62/125 (49.60%), Query Frame = 0
Query:    3 EKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIF------------RGDTK----QILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            E+D+W+Y               G++  C  F+ AM+KAAGV G     I   E T  D  ML IF             GD K    QILGE++M LP +N  +P+ +M+E CP+L P YE+P  C
Sbjct:  415 EQDEWVYSD-------------GKSTTCVAFILAMYKAAGVFGPVTNSIQVTEFTIKDAYMLKIFENNMTQLPNWCNNGDDKLPFCQILGEYKMELPYYNTLEPYTNMNENCPSLPPTYERPARC 526          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: XP_004135222.1 (PREDICTED: uncharacterized protein LOC101209749 [Cucumis sativus] >KGN51842.1 hypothetical protein Csa_5G603390 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 8.200e-12
Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = 0
Query:    3 EKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTK----------------QILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            E+DDW+Y               G++  C  F+ AM+K AG+ G     I   E T  D  ML IF  +                  QILGE++M LP FN  +P+A+M+E CP+L P Y++P  C
Sbjct:  413 EQDDWVYSD-------------GKSTTCVAFILAMYKEAGIFGPVSSSIQVTEFTIRDAYMLKIFEDNHTRLPTWCNNESDKLPFCQILGEYKMELPQFNTLEPYANMNENCPSLPPTYDRPTQC 524          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: XP_010043827.1 (PREDICTED: uncharacterized protein LOC104432932 [Eucalyptus grandis] >KCW85832.1 hypothetical protein EUGRSUZ_B02569 [Eucalyptus grandis])

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-11
Identity = 45/125 (36.00%), Postives = 59/125 (47.20%), Query Frame = 0
Query:    3 EKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTK----------------QILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            E+DDWMY               G++  C  F+ AM+K AGV G     I   E T  D  ML IF                     QILGE+ M LP +N  +P+A+M+E CP+L P+YE+P  C
Sbjct:  423 EQDDWMYSD-------------GKSTTCVAFILAMYKEAGVFGPISSSIQVTEFTIRDAYMLKIFENSQTRLPSWCSNKGGQLPYCQILGEYWMELPEYNTIEPYANMNENCPSLPPSYERPKRC 534          
BLAST of NO01G01290 vs. NCBI_GenBank
Match: XP_002270582.1 (PREDICTED: uncharacterized protein LOC100251867 [Vitis vinifera] >CBI32078.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 1.400e-11
Identity = 42/125 (33.60%), Postives = 58/125 (46.40%), Query Frame = 0
Query:    3 EKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTK----------------QILGEWEMFLPAFNLKQPFAHMDEKCPTLGPAYEQPPDC 112
            E+D+W+Y               G++  C  F+  M+K AG+ G     I   E T  D  ML IF  +                  QILGE+ M LP +N  +P+AHM+E CP+L P YE+P  C
Sbjct:  409 EQDEWVYSD-------------GKSTTCVAFILEMYKEAGIFGPASSSIQVTEFTIRDAYMLKIFENNQSRLPSWCGDEDGRLQFCQILGEYRMELPQYNTIEPYAHMNENCPSLPPTYERPVGC 520          
The following BLAST results are available for this feature:
BLAST of NO01G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29091.15.100e-4673.87hypothetical protein Naga_100024g11 [Nannochlorops... [more]
CEP00268.11.500e-2144.19hypothetical protein PBRA_008002 [Plasmodiophora b... [more]
CEM33381.11.400e-1641.28unnamed protein product [Vitrella brassicaformis C... [more]
CUG91493.12.300e-1438.93Hypothetical protein, putative [Bodo saltans][more]
KZV50677.12.800e-1235.20hypothetical protein F511_29281 [Dorcoceras hygrom... [more]
PSS13564.14.800e-1236.00Leucine--tRNA ligase [Actinidia chinensis var. chi... [more]
XP_012847627.16.300e-1236.80PREDICTED: uncharacterized protein LOC105967570 [E... [more]
XP_004135222.18.200e-1234.40PREDICTED: uncharacterized protein LOC101209749 [C... [more]
XP_010043827.11.100e-1136.00PREDICTED: uncharacterized protein LOC104432932 [E... [more]
XP_002270582.11.400e-1133.60PREDICTED: uncharacterized protein LOC100251867 [V... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01290.1NO01G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01290.1NO01G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01290 ID=NO01G01290|Name=NO01G01290|organism=Nannochloropsis oceanica|type=gene|length=336bp
ATGGTGGAGAAGGATGACTGGATGTACCATACGACAAGGGAGACGAAGGA
GGGAGAGAAAGAGGAGGTAATGGGGCGGGCGATGGTATGTTGTGTCTTTG
TGTGTGCAATGTGGAAGGCCGCGGGGGTGTTGGGGGAGGAAGGGGGGGAG
ATAAATTGCGGAGAGCTGACAAACGCCGATGATGTAATGCTGGCGATATT
CAGGGGCGACACGAAGCAGATTCTGGGGGAATGGGAAATGTTCTTGCCGG
CATTTAATTTGAAGCAGCCGTTTGCACACATGGATGAAAAATGCCCGACT
CTGGGGCCGGCGTATGAACAGCCGCCTGACTGCTAG
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protein sequence of NO01G01290.1

>NO01G01290.1-protein ID=NO01G01290.1-protein|Name=NO01G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MVEKDDWMYHTTRETKEGEKEEVMGRAMVCCVFVCAMWKAAGVLGEEGGE
INCGELTNADDVMLAIFRGDTKQILGEWEMFLPAFNLKQPFAHMDEKCPT
LGPAYEQPPDC*
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Synonyms
Publications