NO01G01120, NO01G01120 (gene) Nannochloropsis oceanica

Overview
NameNO01G01120
Unique NameNO01G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1582
Alignment locationchr1:286357..287938 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:286357..287938 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010530B12D
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO01G01120 vs. NCBI_GenBank
Match: EWM29042.1 (hypothetical protein Naga_100071g7 [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 3.400e-26
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 0 
Query:    1 MLSNAIRQAARLQQRRTLATSAAGDVVYGKSFSAAWLGDKGAWPVLGIIGGALVFCGGFISTKLMFHPDVRITADKRKSDIRT 84
            M++N +RQ AR+QQ RTL+TS    V YGKSFSA WLGDKGAWPV+GIIGGALVFCG FIS K+MFHPDVRIT  KR +DI++
Sbjct:   21 MIANTVRQFARVQQLRTLSTSVPSGVRYGKSFSATWLGDKGAWPVIGIIGGALVFCGSFISNKIMFHPDVRITPSKRNADIQS 103
The following BLAST results are available for this feature:
BLAST of NO01G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29042.13.400e-2671.08hypothetical protein Naga_100071g7 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008257NSK008257Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01120.1NO01G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576174gene_89Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100071g7gene1575Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01120.1NO01G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01120 ID=NO01G01120|Name=NO01G01120|organism=Nannochloropsis oceanica|type=gene|length=1582bp
AATAATTGAGTGAGAAGAAAGCTTGCGTGAGTTGCAGCGGGATGCACCAA
CAGGACGAGGAGCCACAGCGCAGCCAAGTCGCGTTGCGGATAAGAAGGCT
CGGTCCACTAGCCTTCAGCTCGCTTTTCGTTTTCCCTCCCCACTAGCATC
CCCAGGCAAACCCAGTAACAAAGCAACACAGAGCAAATTATGGGCAGGGT
GCCCACAAAACTGGTGGTTGTGCTTGTTGTTGTAATGATTTGCCCTCTGG
CCTGGATGAGAGGCGCTGGTCCTGAACGGCTTCGGCGTGCAAGGACAAAC
CTACTACCCTAACCATTTGTGCCCCCTCTGCGTACCACATAACTACAGCA
ACATCATCAACCAACCAGCAATCATGCTTTCCAACGCCATCCGCCAGGCT
GCACGgtacgtaagggctggggggtgggaggaagcggacatgaagtcgtg
gcccttcggaagccatggatcgggagacgtggagagggtgatgagtggga
agagaagagagggtgcgaaatggacgcaggctcgatcgtcatgcctggtc
gctttgtagtgcattgagaagcatggacataagatagtgacaggacgagg
agcagcaggaacgaaggagggaagcgtaagacgtggtcaaagtcgtagcg
ctccaatcgtgtggaggctctacaccaagctaaaaacacctgattaaact
agcatgtcgcccccaacccccacacacagTCTGCAACAACGCCGCACTCT
GGCCACCAGTGCTGCAGGCGATGTAGTGTACGGCAAGAGCTTCAGTGCGG
CCTGGCTCGGAGACAAGGgtacgttctcttgccgtgggtttcccccccac
tctgctaaccctaaccctaaccgtgggtccccccacccctccgtccacct
cgtagccctctccccagagaaaatctccctccttctcgcttactaggcac
ttaatcgatttatttctcacgccccccatccatgtctatgtctacagGCG
CGTGGCCGGTTTTGGGCATCATCGGCGGTGCCCTAGTCTTCTGCGGGGGC
TTCATTTCCACCAAGTTGATGTTCCATCCCGATGTCCGCATCACGGCCGA
CAAGCGCAAATCCGATATTCGTACCTGGTCTTGAAATAAATTTTGGTCTT
TTGGTTGACAAGATGACACACTCGCACGACGCCAGCAGTATGTGTGGGCT
AGGTGGTTGTGTTGGTGTAGGAGGAGGGAAGGAGGGAGTGAGTGAGGAAG
GGAGGAAAGTCAAAACAATTGGTGGGTGTTATTCTTATTTGTATGAAATT
CAAAGAGAGTAGGTAAAGAGCAGAAAGTGAAAAAAGGATGTAAGGTGTTA
TCATCCTGGCGGGGGTTGAGGAAGGGACTGGGTGTTACGGATGAAAAGCA
AAAGGGAGGATAGGGCGTTTAAATGGGACACGTGATTACAGGACAGAAAT
TTGGGGGATAGTAGCTTTTGTTGGTGCTCTTGCCTTTTATGAGAGGGGGA
TGAGAGCTTTGCTCGTTTCTGTCTGTGAGGGTCTGGACATATGTTGAAGG
AAAGAGAAGAAGTACCAAGCCACCAAAATCAT
back to top

protein sequence of NO01G01120.1

>NO01G01120.1-protein ID=NO01G01120.1-protein|Name=NO01G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MLSNAIRQAARLQQRRTLATSAAGDVVYGKSFSAAWLGDKGAWPVLGIIG
GALVFCGGFISTKLMFHPDVRITADKRKSDIRTWS*
back to top
Synonyms
Publications