Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr1 genome chr1:52465..58590 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00290.1 vs.
Match: EWM28950.1 (hypothetical protein Naga_100389g2 [Nannochloropsis gaditana])
HSP 1 Score: 1051.6 bits (2718), Expect = 1.100e-303
Identity = 550/722 (76.18%), Postives = 603/722 (83.52%), Query Frame = 0
Query: 1 MAGIGSAIKEAEVLSAFQEINEDLQGKTEVVEKCLSILNHLGLSARDLANEWEAHSLNRGSDDSSQALLNLSSLGALEATLSKKVVGSAGTTATPGSSVRSGSSSSSSRRPLFDPSNLPSSEVAMRKRLSMSEDPPLAGKGGAGGVPGLMSPTPS-VPANKRRASSSGAGFMSPPSSASLPSITGTLSAAAGFTPGGISTDSPGQSTPQSAGGAVAYLNRTNAGQKAGAGEHNPALGVRGKFQPSKRFGGARCDLGTLPGTLNINLPTRYRYMYTTLEERARAQEKAMLRLQSDLVERALGEGGMELTPVGVPKQETVMVVGRVCCEAAEGRINKASVVLEGSRRDSGGFRVKLDLGELPAFALFPGQVVAVEGVNSSGFKMVVRRIIEGVPRPLLTSPVDKLKEFHHDGLYQGGGAVTVLVAAGPYTTTDSLEYEPLEDLLKVIAARQPDVAVLCGPFVDSNHPKVAAGETEIAGAGEEKESVDFESLFKMRVSLFLEGLYETNPTLATRIVLVPSLNDVFHDHVYPQPPLADRIPGGVPSPWFEEERLGDLGLPFASENDGADRRLYCLSNPSFFTINEVAVGITTNDILCHLSGDEVSFNTGNRLARLAAHLLQQQSFYPLFPPPADGQAQLDLRHSEHWRMPVTPDLLLLPSKLTPFAKDVGGALCINPGTLTKGGGGGTYAMLNIHPLPFDRLEKMAPGTEVPHEVARRTSVEIVRI 722
M G GSA+KE EVL+AFQEINEDL GK EVVEKCLSI++HLGLSARDLANEWEAH++NRGSDDSSQALLNLSSLG+LEATLSK+ G+ G T TP +S R S R FDPS LPS+E AMRKRLS+SEDP A K G +SP+PS P +R SS GAGFMSPP++AS + A TPGG+S+ S S P SAGGA AYLNRTNAGQKA GTLPG L+INLP+RYR+MYTTLEERARAQEK +LRLQ DLV R L E E+TPVGVPKQETV V+GRVCCEA EGRINKASV+LEGSRRDSGGFRVKL+LG+LPAF+LFPGQVVAVEGVNSSGFKMVVRRIIEG+PRP LTSP K+ EF HD LYQGGGA+++LVAAGPYTTTDSLEYEPLEDLLKVIAARQPDVAVLCGPFVD+NHP+VA+GETEIAGAGEEKESVDFESLFKMRVSLFLEGLY+TNPTLA+RIVLVPSLNDVFHDH PPLADRIPGGVPSPWFEEERLGDLGLPFASE DGAD+RLYCLSNPSFFT+NEVAVG+TTNDILCHLSGDEVS+N GNRLARLAAHLLQQQSF+PLFPPPADGQAQLDLRH++H RMP+TPD+LLLPSKLTPF KDVGGALCINPGTLTKGGGGGTYAML+IHPLP +RLE+M+P TEV HEVARRT EIVRI
Sbjct: 1 MTGTGSAVKEGEVLNAFQEINEDLHGKAEVVEKCLSIIHHLGLSARDLANEWEAHAMNRGSDDSSQALLNLSSLGSLEATLSKRGTGAGGATVTPAASTR------RSGRASFDPSTLPSTEQAMRKRLSLSEDPASAEKWPGAG--AFLSPSPSKAPVKRRPPSSDGAGFMSPPAAASFTPSAAASTPAPMLTPGGLSSTS---SPPLSAGGATAYLNRTNAGQKA----------------------------GTLPGALDINLPSRYRFMYTTLEERARAQEKMLLRLQDDLVARGL-EAEAEVTPVGVPKQETVTVIGRVCCEAPEGRINKASVLLEGSRRDSGGFRVKLELGQLPAFSLFPGQVVAVEGVNSSGFKMVVRRIIEGIPRPFLTSPAKKMLEFQHDSLYQGGGALSLLVAAGPYTTTDSLEYEPLEDLLKVIAARQPDVAVLCGPFVDANHPQVASGETEIAGAGEEKESVDFESLFKMRVSLFLEGLYDTNPTLASRIVLVPSLNDVFHDH----PPLADRIPGGVPSPWFEEERLGDLGLPFASEKDGADKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSYNPGNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDVGGALCINPGTLTKGGGGGTYAMLHIHPLPAERLERMSPETEVQHEVARRTHAEIVRI 678
The following BLAST results are available for this feature:
BLAST of NO01G00290.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 1.10e-303 / Id = 76.18 Sequence EWM28950.1
Match Name E-value Identity Description
EWM28950.1 1.100e-303 76.18 hypothetical protein Naga_100389g2 [Nannochloropsi... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO01G00290.1 ID=NO01G00290.1|Name=NO01G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=4243bp back to top protein sequence of NO01G00290.1
>NO01G00290.1-protein ID=NO01G00290.1-protein|Name=NO01G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp back to top mRNA from alignment at chr1:52465..58590+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00290.1 ID=NO01G00290.1|Name=NO01G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=6126bp|location=Sequence derived from alignment at chr1:52465..58590+ (Nannochloropsis oceanica)ATGGCTGGTATCGGCAGCGCCATTAAAGAGGCTGAGGTCTTGAGTGC
CTTCCAAGAGATCAACGAGGACTTGCAGGGCAAGACCGAAGTGGTGGAGA
AAT GTGAGTGTCGGCGGGGTGAGAGGGGAGGGAGGGAAAGGGGAGGGAAA
GTAGGGTAAGGAGGAGGCGAAGAAACAGAGCATATGCACTGGGGCGACAC
TATCAGATATGACATGTGCGCTTCCGCCTGCCACAGATTCCATGAGTGGC
TCCAAGCCTGTCTTTCACTTCCTCCTTCCCGCCCTTCGGCCTTCCCAGTT
TGAGAAGAGGGCGGGGAAAGAAAGACACGGAAAGGGACATATCTGTGATA
CTCCGCGATAATTTGTATGACCGACTGCAACGCGGTCTATATATTTATGC
CCCCGCTGTCCTATATGTCCAATCGACGCCCCTCTTTGCGCCTCCCTCTC
CCCTCCTTTCCCCACCAATCCAGGTCTCTCCATCCTGAACCATCTCGGCC
TCTCTGCGCGGGATCTGGCGAACGAGTGGGAAGCCCACTCCCTAAACCGC
GGCTCTGACGACAGCAGCCAAGCCTTGCTCAACCTGTCCTCGCTCGGCGC
CCTGGAAGCGACGCTCAGCAAGAAGGTCGTTGGGTCTGCGGGAACGACCG
CCACGCCTGGCTCCTCTGTTCGCAGCGGCAGCAGCAGCAGCAGCAGTCGC
CGCCCTCTGTTCGATCCCTCTAATCTGCCTTCGTCTGAGGTGGCCATGCG
CAAGCGTTTGAGTATGTCCGAGGACCCCCCCTTGGCTGGGAAAGGCGGGG
CAGGAGGAGTACCGGGGCTGATGTCCCCCACTCCTTCTGTCCCAGCCAAC
AAACGACGAGCCTCGTCCAGCGGCGCCGGCTTCATGTCGCCTCCTAGTTC
GGCCTCCCTCCCATCCATCACCGGGACCTTGTCGGCGGCTGCCGGCTTCA
CACCCGGGGGCATTTCTACCGACTCGCCAGGGCAGTCTACGCCACAATCG
GCTGGCGGGGCAGTGGCCTACTTGAATCGGACCAACGCAGGGCAGAAAGC
AG GTGTGTACGCGTGTGTGTGGGAGGAAAGAAAGAAAGAGAGAGAGAAGA
TAAAGGAGGAAGGGAGAATCATGCCATGATCCTTGTCTTCCCATCGCATG
TCTAATCGCTCCTTCCCTCTCCGCCTTCGCCCCAGGCGCCGGTGAGCATA
ACCCCGCGCTGGGTGTACGAGGCAAGTTCCAGCCCTCCAAACGATTCGGC
GGTGCACGCTGCGATCTAG GTATGTGCCTCTTTTGCTATCTTTCTATGAC
CCCTCGTTCCCTTCACTTCCTCTCACCCTGCCCTCCTCCCTCCCTCCCTC
CCCCGTCTCCTTTCCTCAGGCACTCTACCTGGCACCCTGAACATCAACCT
GCCCACTCGGTACCGGTACATGTACACGACGCTGGAGGAACGGGCTCGAG
CCCAGGAGAAGGCCATGCTGCGCTTGCAGAGCGATCTGGTGGAGCGAGCG
CTGGGGGAAGGAGGGATGGAGTTGACGCCGGTGGGGGTTCCGAAGCAGGA
GACGGTAATGGTGGTGGGCCGGGTGTGCTGCGAGGCTGCGGAGGGGAGGA
TCAACAAGGCTAGTGTCGTCTTGGAAG GTAGGGAAACGTGGATTCCCTTA
CAATTTCAGGTCTCTTTCTCATCTTCCATTCTCTCGGGAGCCCGAGCAAA
CCTGAATGAAACATGAACTTCTTCATCCACCCACATACATCCCTTTTCCT
CTCCTCCCCTTCCTCCCTCTCTTCCTCCTCAAGGTTCCCGGCGTGACTCG
GGCGGGTTCCGCGTGAAGCTGGATCTAGGTGAATTACCCGCTTTCGCCCT
CTTTCCCGGCCAGGTGGTGGCCGTGGAGGGTGTCAACAGCAGTG GTGCGC
CTCGAGCCCTCCCTCCCTCGAGCCCTCCCTCCCTCTCACCTTCCTTTTCA
TTTTTACTTTTCTCATTTTATGTTTTTTTTTGTGGGTTCAAAAGCAAGTT
CGTGCTTTCTTTCTTGCTTCGTGTAATATTATAGCTATTGGAGTGCGCAG
CATCTATCAAAGTCCTCTCCTTCCCTGCCCTCCCTTCTCCCTCTCTCCTC
TCTCTCCCTCCCTTCCCCCCAAATAGGCTTCAAGATGGTGGTCCGGCGCA
TCATCGAGGGCGTCCCTCGACCCCTCCTGACCTCGCCCGTTGACAAACTG
AAGGAGTTTCACCACGACGGCCTCTACCAAGGGGGGGGCGCCGTGACGGT
GCTGGTGGCCGCGGGCCCCTACACCACCACGGACTCGCTCGAGTACGAGC
CTCTGGAAGATCTCTTGAAG GTACGGACGAGCTGTTGCCGATCGTCCATC
TCTCCCTCCTTCCCTCCCTTCCTTCCTCCGTGCATTCATGACCCCTTCAA
CTCTTTCCCTCCTATCGTATTTTGCCCCCGCTTGCTTTTCTCCCTCCCTT
CCTCCCTGTCAAGGTGATCGCAGCGCGGCAACCGGATGTGGCGGTGTTGT
GTGGGCCGTTCGTCGACTCCAACCACCCCAAG GTAAAAGTACAGAGAAGG
AAGGTGCCAGGAGGAAAGGGAGGAGCACCAGAAGGAGATCGCGTTAACGG
CACACAAACACTCACTCACACCCATTATTTCCTCCCTTTCTTCCTGCCTC
CTTTCCTTGCCCAACGCAGGTGGCGGCAGGCGAGACCGAGATCGCGGGCG
CGGGCGAAGAGAAGGAGAGCGTGGACTTCGAATCGCTTTTCAAGATGCGA
GTCTCACTCTTCCTGGAGGGGCTGTACGAGACCAACCCCACTCTGGCTAC
GCGCATCGTCCTCGTGCCCTCCCTCAATGACGTCTTCCATGATCATGTCT
ATCCGCAG GTACTGTGCTCTTCCCTCTTCCTCCCTCCAGTTGTATTCTCT
CTCATGCTCTTCCTCGCTAATTCTACGTTCTTTTGATGCTCCCTGATCCC
TCCTTTCCTCCAGCCTCCCCTGGCCGACCGTATTCCCGGCGGCGTACCTT
CCCCTTGGTTCGAAGAGGAGCGACTGGGCGACCTCGGTCTACCATTCGCA
AGTG GTACGTACAGGGGAAGGAGGGGCGGAGTGGAGCAATATAGAAAGCA
ACTGGCTTGCCATATGATATGTTCTCACAAAAATGATTCTCCCTTCCAAT
CTTCCTACCCTATCCTCAGAAAACGACGGGGCGGACAGGCGGCTCTATTG
CTTGAGCAACCCGTCATTCTTTACCATCAACGAAGTCGCCGTCGGCATCA
CCACCAACGACATCCTCTGCCACTTGTCGGGAGATGAG GTGCGTACTCTC
GATCCCTCGCGCCCTCCACGTCGCTGACACGTCTCTGATTTTGCTATCTT
GCTTTCTCATGGGCTCATTCAGGTTTCCTTCAACACCGGGAACCGCCTCG
CACGCCTGGCCGCCCACCTTTTGCAACAACAGAGTTTCTACCCCCTCTTT
CCCCCACCCGCCGATGGACAGGCCCAG GTATGCATTCCTTGATTTTTCTC
TTTCTTCCCGCCCCGGCTAAAATGTAGCACGATTCTCATCACTCCTCTCC
TTCACATCCTTTTACAACAGCTGGACCTCCGTCACTCCGAGCATTGGCGC
ATGCCTGTCACTCCCGATC GTAAGTACTTTTGGCTGTGTCCGGTCCTCTA
TTTTGTTCAACTCTTCAACTTACTCATTCACCTCCTCCTATCCCACCCCT
TATTTTCTCCAAATAGTCCTCCTCCTCCCCTCCAAGCTCACCCCATTCGC
CAAAGACGTAGGTGGCGCGCTTTGCATCAATCCCGGCACCCTCACAAAGG
GCGGAGGCGGAGGCACGTACGCGATGCTTAACATCCATCCCTTGCCTTTT
GACCGTTTGGAGAAAATGGCACCCGGGACTGAG GTAAGAAAGAAAGGGCA
GTAGGAAGAATGCTGCACAGTGCATTACGGTAGATATGCTGTTGCATTTT
GGAGCGCAAATGTACTGACTTTCGCGTATGTTACTTCCCTCTTTGATAAA
GGTACCACATGAGGTGGCAAGGCGGACGAGCGTGGAGATCGTGCGTATTT
AG back to top Coding sequence (CDS) from alignment at chr1:52465..58590+
>NO01G00290.1 ID=NO01G00290.1|Name=NO01G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at chr1:52465..58590+ (Nannochloropsis oceanica) back to top