scaffold40, scaffold40 (supercontig) Nannochloropsis salina

Overview
Namescaffold40
Unique Namescaffold40
Typesupercontig
OrganismNannochloropsis salina (N. salina CCMP1776)
Sequence length100533
Alignment locationNSK007327:306..2630 +
Alignment locationNSK007327t:306..2630 +
Alignment locationNSK007328:3503..6456 +
Alignment locationNSK007328t:3503..6456 +
Alignment locationNSK007329:6655..6904 +
Alignment locationNSK007329t:6655..6904 +
Alignment locationNSK007330:6938..7301 +
Alignment locationNSK007330t:6938..7301 +
Alignment locationNSK007331:8797..10206 -
Alignment locationNSK007331t:8797..10206 -
Alignment locationNSK007332:11424..12461 +
Alignment locationNSK007332t:11424..12461 +
Alignment locationNSK007333:11437..13699 -
Alignment locationNSK007333t:11437..13699 -
Alignment locationNSK007334:14672..15447 +
Alignment locationNSK007334t:14672..15447 +
Alignment locationNSK007335:15468..15960 +
Alignment locationNSK007335t:15468..15960 +
Alignment locationNSK007336:17584..24670 -
Alignment locationNSK007336t:17584..24670 -
Alignment locationNSK007337:24807..25160 +
Alignment locationNSK007337t:24807..25160 +
Alignment locationNSK007338:25369..27451 +
Alignment locationNSK007338t:25369..27451 +
Alignment locationNSK007339:27609..28555 +
Alignment locationNSK007339t:27609..28555 +
Alignment locationNSK007340:28328..28984 +
Alignment locationNSK007340t:28328..28984 +
Alignment locationNSK007341:29356..29952 +
Alignment locationNSK007341t:29356..29952 +
Alignment locationNSK007342:29806..33560 -
Alignment locationNSK007342t:29806..33560 -
Alignment locationNSK007343:34450..36016 +
Alignment locationNSK007343t:34450..36016 +
Alignment locationNSK007344:37134..38119 +
Alignment locationNSK007344t:37134..38119 +
Alignment locationNSK007345:38904..39802 -
Alignment locationNSK007345t:38904..39802 -
Alignment locationNSK007346:39874..45310 -
Alignment locationNSK007346t:39874..45310 -
Alignment locationNSK007347:40218..41255 -
Alignment locationNSK007347t:40218..41255 -
Alignment locationNSK007348:46674..48662 +
Alignment locationNSK007348t:46674..48662 +
Alignment locationNSK007349:50801..54080 +
Alignment locationNSK007349t:50801..54080 +
Alignment locationNSK007350:54201..54619 +
Alignment locationNSK007350t:54201..54619 +
Alignment locationNSK007351:54435..58121 -
Alignment locationNSK007351t:54435..58121 -
Alignment locationNSK007352:61362..64590 -
Alignment locationNSK007352t:61362..64590 -
Alignment locationNSK007353:65472..66793 +
Alignment locationNSK007353t:65472..66793 +
Alignment locationNSK007354:67027..67634 -
Alignment locationNSK007354t:67027..67634 -
Alignment locationNSK007355:67767..68777 -
Alignment locationNSK007355t:67767..68777 -
Alignment locationNSK007356:69067..69654 +
Alignment locationNSK007356t:69067..69654 +
Alignment locationNSK007357:70769..71583 -
Alignment locationNSK007357t:70769..71583 -
Alignment locationNSK007358:73276..74142 -
Alignment locationNSK007358t:73276..74142 -
Alignment locationNSK007359:74432..76107 +
Alignment locationNSK007359t:74432..76107 +
Alignment locationNSK007360:76132..76946 -
Alignment locationNSK007360t:76132..76946 -
Alignment locationNSK007361:77859..79097 +
Alignment locationNSK007361t:77859..79097 +
Alignment locationNSK007362:78639..79505 -
Alignment locationNSK007362t:78639..79505 -
Alignment locationNSK007363:79795..80316 +
Alignment locationNSK007363t:79795..80316 +
Alignment locationNSK007364:81497..82311 -
Alignment locationNSK007364t:81497..82311 -
Alignment locationNSK007365:82548..83362 -
Alignment locationNSK007365t:82548..83362 -
Alignment locationNSK007366:84194..85207 +
Alignment locationNSK007366t:84194..85207 +
Alignment locationNSK007367:86240..89228 +
Alignment locationNSK007367t:86240..89228 +
Alignment locationNSK007368:86888..88668 +
Alignment locationNSK007368t:86888..88668 +
Alignment locationNSK007369:88616..88885 +
Alignment locationNSK007369t:88616..88885 +
Alignment locationNSK007370:88834..89132 -
Alignment locationNSK007370t:88834..89132 -
Alignment locationNSK007371:89634..90229 -
Alignment locationNSK007371t:89634..90229 -
Alignment locationNSK007372:90232..91620 -
Alignment locationNSK007372t:90232..91620 -
Alignment locationNSK007373:92261..92551 +
Alignment locationNSK007373t:92261..92551 +
Alignment locationNSK007374:93232..93863 +
Alignment locationNSK007374t:93232..93863 +
Alignment locationNSK007375:97848..98181 -
Alignment locationNSK007375t:97848..98181 -
Alignment locationNSK007376:99816..100472 +
Alignment locationNSK007376t:99816..100472 +
Alignment locationnonsR010:307..66793 +
Alignment locationnonsR011:11425..36016 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NSK007327geneNSK007327:306..2630 +
NSK007327tmRNANSK007327t:306..2630 +
NSK007328geneNSK007328:3503..6456 +
NSK007328tmRNANSK007328t:3503..6456 +
NSK007329geneNSK007329:6655..6904 +
NSK007329tmRNANSK007329t:6655..6904 +
NSK007330geneNSK007330:6938..7301 +
NSK007330tmRNANSK007330t:6938..7301 +
NSK007331geneNSK007331:8797..10206 -
NSK007331tmRNANSK007331t:8797..10206 -
NSK007332geneNSK007332:11424..12461 +
NSK007332tmRNANSK007332t:11424..12461 +
NSK007333geneNSK007333:11437..13699 -
NSK007333tmRNANSK007333t:11437..13699 -
NSK007334geneNSK007334:14672..15447 +
NSK007334tmRNANSK007334t:14672..15447 +
NSK007335geneNSK007335:15468..15960 +
NSK007335tmRNANSK007335t:15468..15960 +
NSK007336geneNSK007336:17584..24670 -
NSK007336tmRNANSK007336t:17584..24670 -
NSK007337geneNSK007337:24807..25160 +
NSK007337tmRNANSK007337t:24807..25160 +
NSK007338geneNSK007338:25369..27451 +
NSK007338tmRNANSK007338t:25369..27451 +
NSK007339geneNSK007339:27609..28555 +
NSK007339tmRNANSK007339t:27609..28555 +
NSK007340geneNSK007340:28328..28984 +
NSK007340tmRNANSK007340t:28328..28984 +
NSK007341geneNSK007341:29356..29952 +
NSK007341tmRNANSK007341t:29356..29952 +
NSK007342geneNSK007342:29806..33560 -
NSK007342tmRNANSK007342t:29806..33560 -
NSK007343geneNSK007343:34450..36016 +
NSK007343tmRNANSK007343t:34450..36016 +
NSK007344geneNSK007344:37134..38119 +
NSK007344tmRNANSK007344t:37134..38119 +
NSK007345geneNSK007345:38904..39802 -
NSK007345tmRNANSK007345t:38904..39802 -
NSK007346geneNSK007346:39874..45310 -
NSK007346tmRNANSK007346t:39874..45310 -
NSK007347geneNSK007347:40218..41255 -
NSK007347tmRNANSK007347t:40218..41255 -
NSK007348geneNSK007348:46674..48662 +
NSK007348tmRNANSK007348t:46674..48662 +
NSK007349geneNSK007349:50801..54080 +
NSK007349tmRNANSK007349t:50801..54080 +
NSK007350geneNSK007350:54201..54619 +
NSK007350tmRNANSK007350t:54201..54619 +
NSK007351geneNSK007351:54435..58121 -
NSK007351tmRNANSK007351t:54435..58121 -
NSK007352geneNSK007352:61362..64590 -
NSK007352tmRNANSK007352t:61362..64590 -
NSK007353geneNSK007353:65472..66793 +
NSK007353tmRNANSK007353t:65472..66793 +
NSK007354geneNSK007354:67027..67634 -
NSK007354tmRNANSK007354t:67027..67634 -
NSK007355geneNSK007355:67767..68777 -
NSK007355tmRNANSK007355t:67767..68777 -
NSK007356geneNSK007356:69067..69654 +
NSK007356tmRNANSK007356t:69067..69654 +
NSK007357geneNSK007357:70769..71583 -
NSK007357tmRNANSK007357t:70769..71583 -
NSK007358geneNSK007358:73276..74142 -
NSK007358tmRNANSK007358t:73276..74142 -
NSK007359geneNSK007359:74432..76107 +
NSK007359tmRNANSK007359t:74432..76107 +
NSK007360geneNSK007360:76132..76946 -
NSK007360tmRNANSK007360t:76132..76946 -
NSK007361geneNSK007361:77859..79097 +
NSK007361tmRNANSK007361t:77859..79097 +
NSK007362geneNSK007362:78639..79505 -
NSK007362tmRNANSK007362t:78639..79505 -
NSK007363geneNSK007363:79795..80316 +
NSK007363tmRNANSK007363t:79795..80316 +
NSK007364geneNSK007364:81497..82311 -
NSK007364tmRNANSK007364t:81497..82311 -
NSK007365geneNSK007365:82548..83362 -
NSK007365tmRNANSK007365t:82548..83362 -
NSK007366geneNSK007366:84194..85207 +
NSK007366tmRNANSK007366t:84194..85207 +
NSK007367geneNSK007367:86240..89228 +
NSK007367tmRNANSK007367t:86240..89228 +
NSK007368geneNSK007368:86888..88668 +
NSK007368tmRNANSK007368t:86888..88668 +
NSK007369geneNSK007369:88616..88885 +
NSK007369tmRNANSK007369t:88616..88885 +
NSK007370geneNSK007370:88834..89132 -
NSK007370tmRNANSK007370t:88834..89132 -
NSK007371geneNSK007371:89634..90229 -
NSK007371tmRNANSK007371t:89634..90229 -
NSK007372geneNSK007372:90232..91620 -
NSK007372tmRNANSK007372t:90232..91620 -
NSK007373geneNSK007373:92261..92551 +
NSK007373tmRNANSK007373t:92261..92551 +
NSK007374geneNSK007374:93232..93863 +
NSK007374tmRNANSK007374t:93232..93863 +
NSK007375geneNSK007375:97848..98181 -
NSK007375tmRNANSK007375t:97848..98181 -
NSK007376geneNSK007376:99816..100472 +
NSK007376tmRNANSK007376t:99816..100472 +
nonsR010syntenic_regionnonsR010:307..66793 +
nonsR011syntenic_regionnonsR011:11425..36016 -
Analyses
This supercontig is derived from or has results from the following analyses
Analysis NameDate Performed
Genome assembly for N. salina CCMP1776 (version 2)2019-10-08
Annotated Terms
Homology
Relationships
Sequences
Synonyms
Publications