scaffold34, scaffold34 (supercontig) Nannochloropsis salina

Overview
Namescaffold34
Unique Namescaffold34
Typesupercontig
OrganismNannochloropsis salina (N. salina CCMP1776)
Sequence length146385
Alignment locationNSK006243:2755..3248 -
Alignment locationNSK006243t:2755..3248 -
Alignment locationNSK006244:4490..4821 +
Alignment locationNSK006244t:4490..4821 +
Alignment locationNSK006245:4951..5417 +
Alignment locationNSK006245t:4951..5417 +
Alignment locationNSK006246:5423..5828 +
Alignment locationNSK006246t:5423..5828 +
Alignment locationNSK006247:6404..6739 -
Alignment locationNSK006247t:6404..6739 -
Alignment locationNSK006248:7047..8559 +
Alignment locationNSK006248t:7047..8559 +
Alignment locationNSK006249:9871..11517 -
Alignment locationNSK006249t:9871..11517 -
Alignment locationNSK006250:13943..16026 -
Alignment locationNSK006250t:13943..16026 -
Alignment locationNSK006251:17966..18459 -
Alignment locationNSK006251t:17966..18459 -
Alignment locationNSK006252:19701..20032 +
Alignment locationNSK006252t:19701..20032 +
Alignment locationNSK006253:20162..20628 +
Alignment locationNSK006253t:20162..20628 +
Alignment locationNSK006254:20634..21039 +
Alignment locationNSK006254t:20634..21039 +
Alignment locationNSK006255:21615..21948 -
Alignment locationNSK006255t:21615..21948 -
Alignment locationNSK006256:22255..23767 +
Alignment locationNSK006256t:22255..23767 +
Alignment locationNSK006257:25078..26754 -
Alignment locationNSK006257t:25078..26754 -
Alignment locationNSK006258:29149..30624 -
Alignment locationNSK006258t:29149..30624 -
Alignment locationNSK006259:31174..33047 +
Alignment locationNSK006259t:31174..33047 +
Alignment locationNSK006260:33249..33867 -
Alignment locationNSK006260t:33249..33867 -
Alignment locationNSK006261:34760..36175 +
Alignment locationNSK006261t:34760..36175 +
Alignment locationNSK006262:36496..37741 -
Alignment locationNSK006262t:36496..37741 -
Alignment locationNSK006263:38640..39845 -
Alignment locationNSK006263t:38640..39845 -
Alignment locationNSK006264:40385..42866 +
Alignment locationNSK006264t:40385..42866 +
Alignment locationNSK006265:43547..43775 -
Alignment locationNSK006265t:43547..43775 -
Alignment locationNSK006266:44659..46068 +
Alignment locationNSK006266t:44659..46068 +
Alignment locationNSK006267:47383..47787 +
Alignment locationNSK006267t:47383..47787 +
Alignment locationNSK006268:49518..50547 -
Alignment locationNSK006268t:49518..50547 -
Alignment locationNSK006269:51027..53131 +
Alignment locationNSK006269t:51027..53131 +
Alignment locationNSK006270:53128..53376 -
Alignment locationNSK006270t:53128..53376 -
Alignment locationNSK006271:53849..56620 -
Alignment locationNSK006271t:53849..56620 -
Alignment locationNSK006272:57655..58566 +
Alignment locationNSK006272t:57655..58566 +
Alignment locationNSK006273:58380..59995 +
Alignment locationNSK006273t:58380..59995 +
Alignment locationNSK006274:60205..61075 -
Alignment locationNSK006274t:60205..61075 -
Alignment locationNSK006275:61693..65631 +
Alignment locationNSK006275t:61693..65631 +
Alignment locationNSK006276:66761..69055 -
Alignment locationNSK006276t:66761..69055 -
Alignment locationNSK006277:71127..75091 +
Alignment locationNSK006277t:71127..75091 +
Alignment locationNSK006278:75879..77336 -
Alignment locationNSK006278t:75879..77336 -
Alignment locationNSK006279:78144..80428 +
Alignment locationNSK006279t:78144..80428 +
Alignment locationNSK006280:80860..83022 +
Alignment locationNSK006280t:80860..83022 +
Alignment locationNSK006281:83491..84081 -
Alignment locationNSK006281t:83491..84081 -
Alignment locationNSK006282:86185..86775 -
Alignment locationNSK006282t:86185..86775 -
Alignment locationNSK006283:88879..89469 -
Alignment locationNSK006283t:88879..89469 -
Alignment locationNSK006284:91573..92163 -
Alignment locationNSK006284t:91573..92163 -
Alignment locationNSK006285:94267..94857 -
Alignment locationNSK006285t:94267..94857 -
Alignment locationNSK006286:98768..100727 +
Alignment locationNSK006286t:98768..100727 +
Alignment locationNSK006287:101189..103456 -
Alignment locationNSK006287t:101189..103456 -
Alignment locationNSK006288:103805..105063 -
Alignment locationNSK006288t:103805..105063 -
Alignment locationNSK006289:104612..105043 +
Alignment locationNSK006289t:104612..105043 +
Alignment locationNSK006290:105282..106877 -
Alignment locationNSK006290t:105282..106877 -
Alignment locationNSK006291:105809..106040 -
Alignment locationNSK006291t:105809..106040 -
Alignment locationNSK006292:107106..108345 -
Alignment locationNSK006292t:107106..108345 -
Alignment locationNSK006293:107513..108209 +
Alignment locationNSK006293t:107513..108209 +
Alignment locationNSK006294:110668..113864 -
Alignment locationNSK006294t:110668..113864 -
Alignment locationNSK006295:114258..114551 -
Alignment locationNSK006295t:114258..114551 -
Alignment locationNSK006296:115448..117441 -
Alignment locationNSK006296t:115448..117441 -
Alignment locationNSK006297:118582..119332 -
Alignment locationNSK006297t:118582..119332 -
Alignment locationNSK006298:123880..126761 +
Alignment locationNSK006298t:123880..126761 +
Alignment locationNSK006299:127787..128233 +
Alignment locationNSK006299t:127787..128233 +
Alignment locationNSK006300:128558..129082 +
Alignment locationNSK006300t:128558..129082 +
Alignment locationNSK006301:130299..130548 -
Alignment locationNSK006301t:130299..130548 -
Alignment locationNSK006302:130642..133426 -
Alignment locationNSK006302t:130642..133426 -
Alignment locationNSK006303:134027..136462 +
Alignment locationNSK006303t:134027..136462 +
Alignment locationNSK006304:136484..136752 -
Alignment locationNSK006304t:136484..136752 -
Alignment locationNSK006305:137356..138448 -
Alignment locationNSK006305t:137356..138448 -
Alignment locationNSK006306:138983..139802 +
Alignment locationNSK006306t:138983..139802 +
Alignment locationNSK006307:139412..140829 -
Alignment locationNSK006307t:139412..140829 -
Alignment locationNSK006308:142380..144646 -
Alignment locationNSK006308t:142380..144646 -
Alignment locationNSK006309:142488..142823 -
Alignment locationNSK006309t:142488..142823 -
Alignment locationnonsR000:98769..144646 +
Alignment locationnonsR027:17967..53131 +
Alignment locationnonsR028:61694..83022 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NSK006243geneNSK006243:2755..3248 -
NSK006243tmRNANSK006243t:2755..3248 -
NSK006244geneNSK006244:4490..4821 +
NSK006244tmRNANSK006244t:4490..4821 +
NSK006245geneNSK006245:4951..5417 +
NSK006245tmRNANSK006245t:4951..5417 +
NSK006246geneNSK006246:5423..5828 +
NSK006246tmRNANSK006246t:5423..5828 +
NSK006247geneNSK006247:6404..6739 -
NSK006247tmRNANSK006247t:6404..6739 -
NSK006248geneNSK006248:7047..8559 +
NSK006248tmRNANSK006248t:7047..8559 +
NSK006249geneNSK006249:9871..11517 -
NSK006249tmRNANSK006249t:9871..11517 -
NSK006250geneNSK006250:13943..16026 -
NSK006250tmRNANSK006250t:13943..16026 -
NSK006251geneNSK006251:17966..18459 -
NSK006251tmRNANSK006251t:17966..18459 -
NSK006252geneNSK006252:19701..20032 +
NSK006252tmRNANSK006252t:19701..20032 +
NSK006253geneNSK006253:20162..20628 +
NSK006253tmRNANSK006253t:20162..20628 +
NSK006254geneNSK006254:20634..21039 +
NSK006254tmRNANSK006254t:20634..21039 +
NSK006255geneNSK006255:21615..21948 -
NSK006255tmRNANSK006255t:21615..21948 -
NSK006256geneNSK006256:22255..23767 +
NSK006256tmRNANSK006256t:22255..23767 +
NSK006257geneNSK006257:25078..26754 -
NSK006257tmRNANSK006257t:25078..26754 -
NSK006258geneNSK006258:29149..30624 -
NSK006258tmRNANSK006258t:29149..30624 -
NSK006259geneNSK006259:31174..33047 +
NSK006259tmRNANSK006259t:31174..33047 +
NSK006260geneNSK006260:33249..33867 -
NSK006260tmRNANSK006260t:33249..33867 -
NSK006261geneNSK006261:34760..36175 +
NSK006261tmRNANSK006261t:34760..36175 +
NSK006262geneNSK006262:36496..37741 -
NSK006262tmRNANSK006262t:36496..37741 -
NSK006263geneNSK006263:38640..39845 -
NSK006263tmRNANSK006263t:38640..39845 -
NSK006264geneNSK006264:40385..42866 +
NSK006264tmRNANSK006264t:40385..42866 +
NSK006265geneNSK006265:43547..43775 -
NSK006265tmRNANSK006265t:43547..43775 -
NSK006266geneNSK006266:44659..46068 +
NSK006266tmRNANSK006266t:44659..46068 +
NSK006267geneNSK006267:47383..47787 +
NSK006267tmRNANSK006267t:47383..47787 +
NSK006268geneNSK006268:49518..50547 -
NSK006268tmRNANSK006268t:49518..50547 -
NSK006269geneNSK006269:51027..53131 +
NSK006269tmRNANSK006269t:51027..53131 +
NSK006270geneNSK006270:53128..53376 -
NSK006270tmRNANSK006270t:53128..53376 -
NSK006271geneNSK006271:53849..56620 -
NSK006271tmRNANSK006271t:53849..56620 -
NSK006272geneNSK006272:57655..58566 +
NSK006272tmRNANSK006272t:57655..58566 +
NSK006273geneNSK006273:58380..59995 +
NSK006273tmRNANSK006273t:58380..59995 +
NSK006274geneNSK006274:60205..61075 -
NSK006274tmRNANSK006274t:60205..61075 -
NSK006275geneNSK006275:61693..65631 +
NSK006275tmRNANSK006275t:61693..65631 +
NSK006276geneNSK006276:66761..69055 -
NSK006276tmRNANSK006276t:66761..69055 -
NSK006277geneNSK006277:71127..75091 +
NSK006277tmRNANSK006277t:71127..75091 +
NSK006278geneNSK006278:75879..77336 -
NSK006278tmRNANSK006278t:75879..77336 -
NSK006279geneNSK006279:78144..80428 +
NSK006279tmRNANSK006279t:78144..80428 +
NSK006280geneNSK006280:80860..83022 +
NSK006280tmRNANSK006280t:80860..83022 +
NSK006281geneNSK006281:83491..84081 -
NSK006281tmRNANSK006281t:83491..84081 -
NSK006282geneNSK006282:86185..86775 -
NSK006282tmRNANSK006282t:86185..86775 -
NSK006283geneNSK006283:88879..89469 -
NSK006283tmRNANSK006283t:88879..89469 -
NSK006284geneNSK006284:91573..92163 -
NSK006284tmRNANSK006284t:91573..92163 -
NSK006285geneNSK006285:94267..94857 -
NSK006285tmRNANSK006285t:94267..94857 -
NSK006286geneNSK006286:98768..100727 +
NSK006286tmRNANSK006286t:98768..100727 +
NSK006287geneNSK006287:101189..103456 -
NSK006287tmRNANSK006287t:101189..103456 -
NSK006288geneNSK006288:103805..105063 -
NSK006288tmRNANSK006288t:103805..105063 -
NSK006289geneNSK006289:104612..105043 +
NSK006289tmRNANSK006289t:104612..105043 +
NSK006290geneNSK006290:105282..106877 -
NSK006290tmRNANSK006290t:105282..106877 -
NSK006291geneNSK006291:105809..106040 -
NSK006291tmRNANSK006291t:105809..106040 -
NSK006292geneNSK006292:107106..108345 -
NSK006292tmRNANSK006292t:107106..108345 -
NSK006293geneNSK006293:107513..108209 +
NSK006293tmRNANSK006293t:107513..108209 +
NSK006294geneNSK006294:110668..113864 -
NSK006294tmRNANSK006294t:110668..113864 -
NSK006295geneNSK006295:114258..114551 -
NSK006295tmRNANSK006295t:114258..114551 -
NSK006296geneNSK006296:115448..117441 -
NSK006296tmRNANSK006296t:115448..117441 -
NSK006297geneNSK006297:118582..119332 -
NSK006297tmRNANSK006297t:118582..119332 -
NSK006298geneNSK006298:123880..126761 +
NSK006298tmRNANSK006298t:123880..126761 +
NSK006299geneNSK006299:127787..128233 +
NSK006299tmRNANSK006299t:127787..128233 +
NSK006300geneNSK006300:128558..129082 +
NSK006300tmRNANSK006300t:128558..129082 +
NSK006301geneNSK006301:130299..130548 -
NSK006301tmRNANSK006301t:130299..130548 -
NSK006302geneNSK006302:130642..133426 -
NSK006302tmRNANSK006302t:130642..133426 -
NSK006303geneNSK006303:134027..136462 +
NSK006303tmRNANSK006303t:134027..136462 +
NSK006304geneNSK006304:136484..136752 -
NSK006304tmRNANSK006304t:136484..136752 -
NSK006305geneNSK006305:137356..138448 -
NSK006305tmRNANSK006305t:137356..138448 -
NSK006306geneNSK006306:138983..139802 +
NSK006306tmRNANSK006306t:138983..139802 +
NSK006307geneNSK006307:139412..140829 -
NSK006307tmRNANSK006307t:139412..140829 -
NSK006308geneNSK006308:142380..144646 -
NSK006308tmRNANSK006308t:142380..144646 -
NSK006309geneNSK006309:142488..142823 -
NSK006309tmRNANSK006309t:142488..142823 -
nonsR000syntenic_regionnonsR000:98769..144646 +
nonsR027syntenic_regionnonsR027:17967..53131 +
nonsR028syntenic_regionnonsR028:61694..83022 +
Analyses
This supercontig is derived from or has results from the following analyses
Analysis NameDate Performed
Genome assembly for N. salina CCMP1776 (version 2)2019-10-08
Annotated Terms
Homology
Relationships
Sequences
Synonyms
Publications