scaffold28, scaffold28 (supercontig) Nannochloropsis salina

Overview
Namescaffold28
Unique Namescaffold28
Typesupercontig
OrganismNannochloropsis salina (N. salina CCMP1776)
Sequence length198507
Alignment locationNSK005022:23..2353 -
Alignment locationNSK005022t:23..2353 -
Alignment locationNSK005023:1451..1849 +
Alignment locationNSK005023t:1451..1849 +
Alignment locationNSK005024:2676..3174 -
Alignment locationNSK005024t:2676..3174 -
Alignment locationNSK005025:3842..5050 -
Alignment locationNSK005025t:3842..5050 -
Alignment locationNSK005026:5369..5701 +
Alignment locationNSK005026t:5369..5701 +
Alignment locationNSK005027:6259..7888 -
Alignment locationNSK005027t:6259..7888 -
Alignment locationNSK005028:8073..8380 +
Alignment locationNSK005028t:8073..8380 +
Alignment locationNSK005029:9036..10674 +
Alignment locationNSK005029t:9036..10674 +
Alignment locationNSK005030:11879..13760 +
Alignment locationNSK005030t:11879..13760 +
Alignment locationNSK005031:13797..15017 -
Alignment locationNSK005031t:13797..15017 -
Alignment locationNSK005032:15345..16362 -
Alignment locationNSK005032t:15345..16362 -
Alignment locationNSK005033:18161..20239 +
Alignment locationNSK005033t:18161..20239 +
Alignment locationNSK005034:23595..26546 -
Alignment locationNSK005034t:23595..26546 -
Alignment locationNSK005035:26514..26849 -
Alignment locationNSK005035t:26514..26849 -
Alignment locationNSK005036:27356..27731 -
Alignment locationNSK005036t:27356..27731 -
Alignment locationNSK005037:28194..29000 -
Alignment locationNSK005037t:28194..29000 -
Alignment locationNSK005038:28909..29524 -
Alignment locationNSK005038t:28909..29524 -
Alignment locationNSK005039:29945..30120 +
Alignment locationNSK005039t:29945..30120 +
Alignment locationNSK005040:30448..31962 +
Alignment locationNSK005040t:30448..31962 +
Alignment locationNSK005041:32027..33269 +
Alignment locationNSK005041t:32027..33269 +
Alignment locationNSK005042:34060..36307 +
Alignment locationNSK005042t:34060..36307 +
Alignment locationNSK005043:37015..38804 -
Alignment locationNSK005043t:37015..38804 -
Alignment locationNSK005044:38880..39156 -
Alignment locationNSK005044t:38880..39156 -
Alignment locationNSK005045:39466..40306 +
Alignment locationNSK005045t:39466..40306 +
Alignment locationNSK005046:40953..41270 -
Alignment locationNSK005046t:40953..41270 -
Alignment locationNSK005047:41553..45202 +
Alignment locationNSK005047t:41553..45202 +
Alignment locationNSK005048:45762..46659 -
Alignment locationNSK005048t:45762..46659 -
Alignment locationNSK005049:46788..47849 -
Alignment locationNSK005049t:46788..47849 -
Alignment locationNSK005050:48922..56605 +
Alignment locationNSK005050t:48922..56605 +
Alignment locationNSK005051:57358..59542 +
Alignment locationNSK005051t:57358..59542 +
Alignment locationNSK005052:59293..60140 -
Alignment locationNSK005052t:59293..60140 -
Alignment locationNSK005053:60105..60496 -
Alignment locationNSK005053t:60105..60496 -
Alignment locationNSK005054:60790..62814 +
Alignment locationNSK005054t:60790..62814 +
Alignment locationNSK005055:62603..63669 -
Alignment locationNSK005055t:62603..63669 -
Alignment locationNSK005056:63816..64559 -
Alignment locationNSK005056t:63816..64559 -
Alignment locationNSK005057:65003..66302 +
Alignment locationNSK005057t:65003..66302 +
Alignment locationNSK005058:66747..68931 +
Alignment locationNSK005058t:66747..68931 +
Alignment locationNSK005059:69803..70004 -
Alignment locationNSK005059t:69803..70004 -
Alignment locationNSK005060:70461..71579 +
Alignment locationNSK005060t:70461..71579 +
Alignment locationNSK005061:72622..72991 +
Alignment locationNSK005061t:72622..72991 +
Alignment locationNSK005062:73064..73431 +
Alignment locationNSK005062t:73064..73431 +
Alignment locationNSK005063:73475..75064 -
Alignment locationNSK005063t:73475..75064 -
Alignment locationNSK005064:75979..78180 -
Alignment locationNSK005064t:75979..78180 -
Alignment locationNSK005065:79852..80553 +
Alignment locationNSK005065t:79852..80553 +
Alignment locationNSK005066:80822..81718 -
Alignment locationNSK005066t:80822..81718 -
Alignment locationNSK005067:82724..84682 +
Alignment locationNSK005067t:82724..84682 +
Alignment locationNSK005068:86131..86612 +
Alignment locationNSK005068t:86131..86612 +
Alignment locationNSK005069:87361..91872 +
Alignment locationNSK005069t:87361..91872 +
Alignment locationNSK005070:94137..96413 -
Alignment locationNSK005070t:94137..96413 -
Alignment locationNSK005071:96866..100696 -
Alignment locationNSK005071t:96866..100696 -
Alignment locationNSK005072:101274..106631 +
Alignment locationNSK005072t:101274..106631 +
Alignment locationNSK005073:107379..108248 +
Alignment locationNSK005073t:107379..108248 +
Alignment locationNSK005074:108382..109641 -
Alignment locationNSK005074t:108382..109641 -
Alignment locationNSK005075:110230..112038 -
Alignment locationNSK005075t:110230..112038 -
Alignment locationNSK005076:112105..112316 -
Alignment locationNSK005076t:112105..112316 -
Alignment locationNSK005077:112323..114582 -
Alignment locationNSK005077t:112323..114582 -
Alignment locationNSK005078:115003..117749 +
Alignment locationNSK005078t:115003..117749 +
Alignment locationNSK005079:118052..119283 -
Alignment locationNSK005079t:118052..119283 -
Alignment locationNSK005080:119584..119960 -
Alignment locationNSK005080t:119584..119960 -
Alignment locationNSK005081:120038..121248 +
Alignment locationNSK005081t:120038..121248 +
Alignment locationNSK005082:121468..121757 -
Alignment locationNSK005082t:121468..121757 -
Alignment locationNSK005083:122475..123118 +
Alignment locationNSK005083t:122475..123118 +
Alignment locationNSK005084:123154..123663 +
Alignment locationNSK005084t:123154..123663 +
Alignment locationNSK005085:124285..125488 +
Alignment locationNSK005085t:124285..125488 +
Alignment locationNSK005086:125757..127181 -
Alignment locationNSK005086t:125757..127181 -
Alignment locationNSK005087:128639..132488 +
Alignment locationNSK005087t:128639..132488 +
Alignment locationNSK005088:133081..135567 -
Alignment locationNSK005088t:133081..135567 -
Alignment locationNSK005089:136252..138627 +
Alignment locationNSK005089t:136252..138627 +
Alignment locationNSK005090:138866..140983 -
Alignment locationNSK005090t:138866..140983 -
Alignment locationNSK005091:141236..141708 +
Alignment locationNSK005091t:141236..141708 +
Alignment locationNSK005092:142053..143713 -
Alignment locationNSK005092t:142053..143713 -
Alignment locationNSK005093:144183..144514 +
Alignment locationNSK005093t:144183..144514 +
Alignment locationNSK005094:144704..145312 -
Alignment locationNSK005094t:144704..145312 -
Alignment locationNSK005095:145819..147133 +
Alignment locationNSK005095t:145819..147133 +
Alignment locationNSK005096:147277..148109 -
Alignment locationNSK005096t:147277..148109 -
Alignment locationNSK005097:147939..151220 +
Alignment locationNSK005097t:147939..151220 +
Alignment locationNSK005098:151876..152714 -
Alignment locationNSK005098t:151876..152714 -
Alignment locationNSK005099:152597..153856 +
Alignment locationNSK005099t:152597..153856 +
Alignment locationNSK005100:154679..155983 -
Alignment locationNSK005100t:154679..155983 -
Alignment locationNSK005101:156767..159550 -
Alignment locationNSK005101t:156767..159550 -
Alignment locationNSK005102:160002..161411 +
Alignment locationNSK005102t:160002..161411 +
Alignment locationNSK005103:162339..163023 +
Alignment locationNSK005103t:162339..163023 +
Alignment locationNSK005104:163214..165621 +
Alignment locationNSK005104t:163214..165621 +
Alignment locationNSK005105:166237..167613 +
Alignment locationNSK005105t:166237..167613 +
Alignment locationNSK005106:168230..169757 -
Alignment locationNSK005106t:168230..169757 -
Alignment locationNSK005107:170594..171904 +
Alignment locationNSK005107t:170594..171904 +
Alignment locationNSK005108:172170..174694 -
Alignment locationNSK005108t:172170..174694 -
Alignment locationNSK005109:175855..177531 +
Alignment locationNSK005109t:175855..177531 +
Alignment locationNSK005110:180073..181035 +
Alignment locationNSK005110t:180073..181035 +
Alignment locationNSK005111:181557..182897 -
Alignment locationNSK005111t:181557..182897 -
Alignment locationNSK005112:182944..183693 -
Alignment locationNSK005112t:182944..183693 -
Alignment locationNSK005113:184192..185660 +
Alignment locationNSK005113t:184192..185660 +
Alignment locationNSK005114:185857..193092 -
Alignment locationNSK005114t:185857..193092 -
Alignment locationNSK005115:193494..193702 +
Alignment locationNSK005115t:193494..193702 +
Alignment locationNSK005116:194228..195640 +
Alignment locationNSK005116t:194228..195640 +
Alignment locationNSK005117:195919..197884 -
Alignment locationNSK005117t:195919..197884 -
Alignment locationNSK005118:196970..197466 -
Alignment locationNSK005118t:196970..197466 -
Alignment locationnonsR057:3843..195640 +
Alignment locationnonsR058:18162..114582 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NSK005022geneNSK005022:23..2353 -
NSK005022tmRNANSK005022t:23..2353 -
NSK005023geneNSK005023:1451..1849 +
NSK005023tmRNANSK005023t:1451..1849 +
NSK005024geneNSK005024:2676..3174 -
NSK005024tmRNANSK005024t:2676..3174 -
NSK005025geneNSK005025:3842..5050 -
NSK005025tmRNANSK005025t:3842..5050 -
NSK005026geneNSK005026:5369..5701 +
NSK005026tmRNANSK005026t:5369..5701 +
NSK005027geneNSK005027:6259..7888 -
NSK005027tmRNANSK005027t:6259..7888 -
NSK005028geneNSK005028:8073..8380 +
NSK005028tmRNANSK005028t:8073..8380 +
NSK005029geneNSK005029:9036..10674 +
NSK005029tmRNANSK005029t:9036..10674 +
NSK005030geneNSK005030:11879..13760 +
NSK005030tmRNANSK005030t:11879..13760 +
NSK005031geneNSK005031:13797..15017 -
NSK005031tmRNANSK005031t:13797..15017 -
NSK005032geneNSK005032:15345..16362 -
NSK005032tmRNANSK005032t:15345..16362 -
NSK005033geneNSK005033:18161..20239 +
NSK005033tmRNANSK005033t:18161..20239 +
NSK005034geneNSK005034:23595..26546 -
NSK005034tmRNANSK005034t:23595..26546 -
NSK005035geneNSK005035:26514..26849 -
NSK005035tmRNANSK005035t:26514..26849 -
NSK005036geneNSK005036:27356..27731 -
NSK005036tmRNANSK005036t:27356..27731 -
NSK005037geneNSK005037:28194..29000 -
NSK005037tmRNANSK005037t:28194..29000 -
NSK005038geneNSK005038:28909..29524 -
NSK005038tmRNANSK005038t:28909..29524 -
NSK005039geneNSK005039:29945..30120 +
NSK005039tmRNANSK005039t:29945..30120 +
NSK005040geneNSK005040:30448..31962 +
NSK005040tmRNANSK005040t:30448..31962 +
NSK005041geneNSK005041:32027..33269 +
NSK005041tmRNANSK005041t:32027..33269 +
NSK005042geneNSK005042:34060..36307 +
NSK005042tmRNANSK005042t:34060..36307 +
NSK005043geneNSK005043:37015..38804 -
NSK005043tmRNANSK005043t:37015..38804 -
NSK005044geneNSK005044:38880..39156 -
NSK005044tmRNANSK005044t:38880..39156 -
NSK005045geneNSK005045:39466..40306 +
NSK005045tmRNANSK005045t:39466..40306 +
NSK005046geneNSK005046:40953..41270 -
NSK005046tmRNANSK005046t:40953..41270 -
NSK005047geneNSK005047:41553..45202 +
NSK005047tmRNANSK005047t:41553..45202 +
NSK005048geneNSK005048:45762..46659 -
NSK005048tmRNANSK005048t:45762..46659 -
NSK005049geneNSK005049:46788..47849 -
NSK005049tmRNANSK005049t:46788..47849 -
NSK005050geneNSK005050:48922..56605 +
NSK005050tmRNANSK005050t:48922..56605 +
NSK005051geneNSK005051:57358..59542 +
NSK005051tmRNANSK005051t:57358..59542 +
NSK005052geneNSK005052:59293..60140 -
NSK005052tmRNANSK005052t:59293..60140 -
NSK005053geneNSK005053:60105..60496 -
NSK005053tmRNANSK005053t:60105..60496 -
NSK005054geneNSK005054:60790..62814 +
NSK005054tmRNANSK005054t:60790..62814 +
NSK005055geneNSK005055:62603..63669 -
NSK005055tmRNANSK005055t:62603..63669 -
NSK005056geneNSK005056:63816..64559 -
NSK005056tmRNANSK005056t:63816..64559 -
NSK005057geneNSK005057:65003..66302 +
NSK005057tmRNANSK005057t:65003..66302 +
NSK005058geneNSK005058:66747..68931 +
NSK005058tmRNANSK005058t:66747..68931 +
NSK005059geneNSK005059:69803..70004 -
NSK005059tmRNANSK005059t:69803..70004 -
NSK005060geneNSK005060:70461..71579 +
NSK005060tmRNANSK005060t:70461..71579 +
NSK005061geneNSK005061:72622..72991 +
NSK005061tmRNANSK005061t:72622..72991 +
NSK005062geneNSK005062:73064..73431 +
NSK005062tmRNANSK005062t:73064..73431 +
NSK005063geneNSK005063:73475..75064 -
NSK005063tmRNANSK005063t:73475..75064 -
NSK005064geneNSK005064:75979..78180 -
NSK005064tmRNANSK005064t:75979..78180 -
NSK005065geneNSK005065:79852..80553 +
NSK005065tmRNANSK005065t:79852..80553 +
NSK005066geneNSK005066:80822..81718 -
NSK005066tmRNANSK005066t:80822..81718 -
NSK005067geneNSK005067:82724..84682 +
NSK005067tmRNANSK005067t:82724..84682 +
NSK005068geneNSK005068:86131..86612 +
NSK005068tmRNANSK005068t:86131..86612 +
NSK005069geneNSK005069:87361..91872 +
NSK005069tmRNANSK005069t:87361..91872 +
NSK005070geneNSK005070:94137..96413 -
NSK005070tmRNANSK005070t:94137..96413 -
NSK005071geneNSK005071:96866..100696 -
NSK005071tmRNANSK005071t:96866..100696 -
NSK005072geneNSK005072:101274..106631 +
NSK005072tmRNANSK005072t:101274..106631 +
NSK005073geneNSK005073:107379..108248 +
NSK005073tmRNANSK005073t:107379..108248 +
NSK005074geneNSK005074:108382..109641 -
NSK005074tmRNANSK005074t:108382..109641 -
NSK005075geneNSK005075:110230..112038 -
NSK005075tmRNANSK005075t:110230..112038 -
NSK005076geneNSK005076:112105..112316 -
NSK005076tmRNANSK005076t:112105..112316 -
NSK005077geneNSK005077:112323..114582 -
NSK005077tmRNANSK005077t:112323..114582 -
NSK005078geneNSK005078:115003..117749 +
NSK005078tmRNANSK005078t:115003..117749 +
NSK005079geneNSK005079:118052..119283 -
NSK005079tmRNANSK005079t:118052..119283 -
NSK005080geneNSK005080:119584..119960 -
NSK005080tmRNANSK005080t:119584..119960 -
NSK005081geneNSK005081:120038..121248 +
NSK005081tmRNANSK005081t:120038..121248 +
NSK005082geneNSK005082:121468..121757 -
NSK005082tmRNANSK005082t:121468..121757 -
NSK005083geneNSK005083:122475..123118 +
NSK005083tmRNANSK005083t:122475..123118 +
NSK005084geneNSK005084:123154..123663 +
NSK005084tmRNANSK005084t:123154..123663 +
NSK005085geneNSK005085:124285..125488 +
NSK005085tmRNANSK005085t:124285..125488 +
NSK005086geneNSK005086:125757..127181 -
NSK005086tmRNANSK005086t:125757..127181 -
NSK005087geneNSK005087:128639..132488 +
NSK005087tmRNANSK005087t:128639..132488 +
NSK005088geneNSK005088:133081..135567 -
NSK005088tmRNANSK005088t:133081..135567 -
NSK005089geneNSK005089:136252..138627 +
NSK005089tmRNANSK005089t:136252..138627 +
NSK005090geneNSK005090:138866..140983 -
NSK005090tmRNANSK005090t:138866..140983 -
NSK005091geneNSK005091:141236..141708 +
NSK005091tmRNANSK005091t:141236..141708 +
NSK005092geneNSK005092:142053..143713 -
NSK005092tmRNANSK005092t:142053..143713 -
NSK005093geneNSK005093:144183..144514 +
NSK005093tmRNANSK005093t:144183..144514 +
NSK005094geneNSK005094:144704..145312 -
NSK005094tmRNANSK005094t:144704..145312 -
NSK005095geneNSK005095:145819..147133 +
NSK005095tmRNANSK005095t:145819..147133 +
NSK005096geneNSK005096:147277..148109 -
NSK005096tmRNANSK005096t:147277..148109 -
NSK005097geneNSK005097:147939..151220 +
NSK005097tmRNANSK005097t:147939..151220 +
NSK005098geneNSK005098:151876..152714 -
NSK005098tmRNANSK005098t:151876..152714 -
NSK005099geneNSK005099:152597..153856 +
NSK005099tmRNANSK005099t:152597..153856 +
NSK005100geneNSK005100:154679..155983 -
NSK005100tmRNANSK005100t:154679..155983 -
NSK005101geneNSK005101:156767..159550 -
NSK005101tmRNANSK005101t:156767..159550 -
NSK005102geneNSK005102:160002..161411 +
NSK005102tmRNANSK005102t:160002..161411 +
NSK005103geneNSK005103:162339..163023 +
NSK005103tmRNANSK005103t:162339..163023 +
NSK005104geneNSK005104:163214..165621 +
NSK005104tmRNANSK005104t:163214..165621 +
NSK005105geneNSK005105:166237..167613 +
NSK005105tmRNANSK005105t:166237..167613 +
NSK005106geneNSK005106:168230..169757 -
NSK005106tmRNANSK005106t:168230..169757 -
NSK005107geneNSK005107:170594..171904 +
NSK005107tmRNANSK005107t:170594..171904 +
NSK005108geneNSK005108:172170..174694 -
NSK005108tmRNANSK005108t:172170..174694 -
NSK005109geneNSK005109:175855..177531 +
NSK005109tmRNANSK005109t:175855..177531 +
NSK005110geneNSK005110:180073..181035 +
NSK005110tmRNANSK005110t:180073..181035 +
NSK005111geneNSK005111:181557..182897 -
NSK005111tmRNANSK005111t:181557..182897 -
NSK005112geneNSK005112:182944..183693 -
NSK005112tmRNANSK005112t:182944..183693 -
NSK005113geneNSK005113:184192..185660 +
NSK005113tmRNANSK005113t:184192..185660 +
NSK005114geneNSK005114:185857..193092 -
NSK005114tmRNANSK005114t:185857..193092 -
NSK005115geneNSK005115:193494..193702 +
NSK005115tmRNANSK005115t:193494..193702 +
NSK005116geneNSK005116:194228..195640 +
NSK005116tmRNANSK005116t:194228..195640 +
NSK005117geneNSK005117:195919..197884 -
NSK005117tmRNANSK005117t:195919..197884 -
NSK005118geneNSK005118:196970..197466 -
NSK005118tmRNANSK005118t:196970..197466 -
nonsR057syntenic_regionnonsR057:3843..195640 +
nonsR058syntenic_regionnonsR058:18162..114582 -
Analyses
This supercontig is derived from or has results from the following analyses
Analysis NameDate Performed
Genome assembly for N. salina CCMP1776 (version 2)2019-10-08
Annotated Terms
Homology
Relationships
Sequences
Synonyms
Publications