rna9994, rna9994 (mRNA) Nannochloropsis gaditana

Overview
Namerna9994
Unique Namerna9994
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1517
Alignment locationKK037259.1:78880..80435 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100789g1.8989.mrna
Orig protein idgnl|cribi|Naga_100789g1.8989
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:78880..80435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100789g1gene9696Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9994rna9994-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20711.1cds9963Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9994 ID=rna9994|Name=rna9994|organism=Nannochloropsis gaditana|type=mRNA|length=1517bp
CTCCTGCTGTTGCGTTTTATAAAAACACTTGCAACAGGGCCAGAGCTGTT
CTAACCCCGGAACTCCGTCAAAAATCTCGAACTTTATTTAAAATGTCTGC
ATGTATTCTCTGCTTTTGTCGCTCTTTTTTCCATCGTTTCCCTCGCATCA
TGCATTGCTTACAAAGCGGGCAAATTTTACGAGATTTCGTCCTCATCTTC
CTCCAATTTCTATTTTCCCGTCCCATTTGTCCCATCAGGATCTAGGAGAC
AACGTATCTGCTTCCTCATCTGATTTCACAACGGCTTTCCAGGCCTTTAT
ACGCCTTTGTGGAAAACCTTCGGGGCCTGGTGTATGCCGGGACACCCCTC
CTCGTCTCTCCGCGTTCGACCAGACAGCTGCAACTTTTTCCGCGGCGCCT
TCCCCCGACCTTTTCTGTTCGCTCGCTACTTTCGTTCCTCCTCTGCCCTT
CTTCTCTTTTTGACAATACCGCTTTCTATTTGTTTTGTGAGGCCTCCAGG
ACCCTTTTCCATAGCCAGCCTCTGCCCTTCATGGGGGACAAGGAGCATCG
TTAGCAACTTTCCACGTCCTGACGCGAGGCGAGCCTTCACGACATTCAGC
GGCACCGACGTCCACCTGGCCATGTCTTCCTCCTCCGTGTCCCATGCTCT
TTCAGGCCCTGCATACATCGAGCAAGAAGAGCTACTCGCGATTCTTCACG
CCCGACGCCGCGGAGAGCGTTCTCTCAAGCTTCAAATCTTGGACGTGCGC
GACGACGACTACACAGTGGCAAAGCTTCCCGGGGCAATCAACGTGCCCAG
CGAAGACTGGCGGGATGAGGAGCGAGTCGTCGCCCTCGCTGAGTCCTTGA
AGGACCATGACATGATTGTGCTCCATTGCATGCTTTCCCAAGTCCGGGGA
CCCTTTTGCAGCGCTCGTTTGATGGCGCACTTTTCTTGCGCGGTGGGGGA
GGATGGAGGGGCGGCCACGAAACAGGAACGGAATCAGAGCAGCGGCCGAA
ACGACGGGGAGGAAACATTGCCGGCGAATGAAAGTAAAAAAGAGAGAAGG
CGAGAACAGGGGGTTCCACAGGTCTTGGTCCTCCGAGGGGGGTTTCAGGG
ATGGTATGCACGGTACCGGGAGGAGATAGGGATGGTGGAACCGTGTGAAT
GACAAGGTAAAGTTGTTGGCCCTCTCACGGGGAGACATCTAAGCATTTGG
GGGCGATTTTTTTAAACATATAGTTCGTGAATGGCACGAAGTATCTCAGT
TTCGTGTCTTTTACGTCGAGGTTCAATAGGGAAGCAATGAAATGATTGCA
TTGAGACCTCTTGAGTGAAATTTGAGAAATGGGGAGAAATACGAGCCTCC
CCTCCTCCGGAAAAAACTTCCTGTCCACTTGGGGCATAATCACTACCGCG
CACTATTTTCCTTTTATCAACTTATATCGAGGGAGATATTGTCAGGATAA
AAAGACACAACTCAATTGAAGCCGATCAAGAAAAAGTTTGATATAGAACA
CAACGGTCGGCCGCTGC
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protein sequence of rna9994

>rna9994-protein ID=rna9994-protein|Name=rna9994|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MKKTIRSITFPIHRPPSTLNAGASTRKSSNDSSDGSGSISPVPQHSHHPS
TLKRARPQQHYEKGQRLTANEAMASLPPFQDSVTSQPTRSQQGEKNTSPL
PPRAPSLTIHVQECLDEAFGLYVWPSSVKLASYLYHLFERYPDFFRGKRV
IELGAG
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mRNA from alignment at KK037259.1:78880..80435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9994 ID=rna9994|Name=rna9994|organism=Nannochloropsis gaditana|type=mRNA|length=1556bp|location=Sequence derived from alignment at KK037259.1:78880..80435+ (Nannochloropsis gaditana)
ATGGGTAAGAAAGATGGCTTgactaacctcctccctcctttccaaacCCC
AAATATACAGGGGCCACAACATATCAAACAACGATCTGCACATGTCGCAC
AATGAAAAAGACAATTCGTTCAATCACATTCCCAATCCATCGCCCACCAA
GCACATTGAATGCCGGCGCCAGCACTCGCAAGTCGAGCAATGACAGCAGT
GACGGCAGCGGTAGCATCAGTCCTGTCCCCCAACACAGCCACCATCCTTC
TACTCTGAAGAGAGCAAGACCGCAACAGCATTACGAAAAAGGGCAACGTC
TAACGGCTAACGAGGCAATGGCGTCATTACCACCATTCCAAGACTCTGTC
ACGTCCCAACCGACGCGCTCACAACAAGGCGAAAAGAAtacctccccact
cccccctcgggcgccctccctcacaatCCACGTCCAAGAATGTCTCGATG
AAGCCTTCGGATTGTATGTATGGCCGTCGTCCGTAAAACTAGCCTCGTAT
CTGTACCATCTGTTTGAGAGATACCCGGACTTTTTCCGAGGCAAGCGAGT
GATCGAGCTGGGCGCTGGGTGAGcatggcagaggagggaacggcggaact
tcgggagggagggcgttaCGTTGACAGGCAGCAAgtagaaagagaggggg
caagggaagaCAAGGTAGCAAGAGCTATCTTGTAGGCCCTGACCCAAGGc
aatctctccctccctccctccctccctccctcccttccctcctccctccc
tccctcccttccctcctccctcccttcctccctccctacctccccttcgc
caGGACTGCCCTCCCAAGCCTCTTGTGCGCCCATCCCCGACTGGGAGCGG
CGCATGTGCGGGTGACGGACCGGGCAGATGCCAGGGCAGTGCTGGAGAAC
GCAAGGGAGTCCTGTCGATTGAACAAGTacggtgaaggagggggagaggg
aggcgggaggcccagaaggagaggaggaggtggagggggaaaagagtGGG
GTAAGGAAGACGATGACAGGGTGGGGCGCAgtgaaggagaggcaggaagg
gaagaggggcgggtgcGGGTGGAGGGGTGGACCTGGGGTAGCTGGAGCAG
AGTcctcgagggcgagggggagggcgggggggagggcggggaagaggcca
GGTGGGACATTGTCCTGGCGGCTGACTGCTGCTATTGTAAATCGACGACC
GAGTCCTTCCTGGCCACGGTCGTATTTCTcctgcggggggggaagggccc
ggaagagggagggaggggggctctctccccttcctccccctccgtcgctc
cctcaatctcgccctccccggtgCTGTACTTGGCCTATCCAGacagaggg
atggagggactGAGGGTCCTCTTCCTTCGATGGGGTCtggcggtgaggga
ggtggagggcgcggggggggaaggaggggagggaggggaggaagaagagg
tggcggggatgggaggggtgAAGATCTACATCTTGGAGGTGCGGTTGGCG
GACAGGCTTTAATTGAGCACAACGTAATTAAAAATAGAATGCAAAAATAG
GAAAGG
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Coding sequence (CDS) from alignment at KK037259.1:78880..80435+

>rna9994 ID=rna9994|Name=rna9994|organism=Nannochloropsis gaditana|type=CDS|length=471bp|location=Sequence derived from alignment at KK037259.1:78880..80435+ (Nannochloropsis gaditana)
ATGAAAAAGACAATTCGTTCAATCACATTCCCAATCCATCGCCCACCAAG
CACATTGAATGCCGGCGCCAGCACTCGCAAGTCGAGCAATGACAGCAGTG
ACGGCAGCGGTAGCATCAGTCCTGTCCCCCAACACAGCCACCATCCTTCT
ACTCTGAAGAGAGCAAGACCGCAACAGCATTACGAAAAAGGGCAACGTCT
AACGGCTAACGAGGCAATGGCGTCATTACCACCATTCCAAGACTCTGTCA
CGTCCCAACCGACGCGCTCACAACAAGGCGAAAAGAAtacctccccactc
ccccctcgggcgccctccctcacaatCCACGTCCAAGAATGTCTCGATGA
AGCCTTCGGATTGTATGTATGGCCGTCGTCCGTAAAACTAGCCTCGTATC
TGTACCATCTGTTTGAGAGATACCCGGACTTTTTCCGAGGCAAGCGAGTG
ATCGAGCTGGGCGCTGGGTGA
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Synonyms
Publications