rna9990, rna9990 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9990
Unique Name	rna9990
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	951
Alignment location	KK037259.1:66901..67788 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102008g1.2275.mrna
Orig protein id	gnl\|cribi\|Naga_102008g1.2275
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037259.1	supercontig	KK037259.1:66901..67788 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102008g1	gene9691	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9990	rna9990-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20714.1	cds9959	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037259.1:66901..67788-
coding sequence from alignment at KK037259.1:66901..67788-

mRNA sequence

>rna9990 ID=rna9990|Name=rna9990|organism=Nannochloropsis gaditana|type=mRNA|length=951bp
GGGACCTGTTCGAGGGGAAGAGAGGATCTTTTGCCGCTCTTTCTTTACCC
CTTCGTCTCCCGAACACTTCATTTCCCGTGTTCCCTTTTCCTACGCCCTT
TTCACTTAGGTTTCGGCGCACAAGGACCATTAGCTCAAAGCGGACCATCT
GAAGTTTGGAATGCATGAATGGTTGTCGACGTGGTCGCGATTTATCCCGT
CTCTTACTTCTCATGACCTTAACCACTTTAATCCTTATCACAGGCATGCC
ACGTCCTCCGGTCCCTAAACCCCGCGAGGGAGCCGAGCAGAGGAATGGCA
CTAAAAATGGATCGTCTGCTGGCCACAATAAAAATCACCACGAAGCACAA
GAACAAAAACTGCAGCACCAGACCCTCCCTCCCATCCTCCCCCCGCCGGT
AGTGATGAAGAGTGGAATGGGTGTTGTGGGAGGAAACAAGAGCCAAAAAG
AAGAGGACATGGTGGCTGAGAGAGAAGCCTTGCACAAATTGCATTACGGT
ACGCTGGTATCTTTGCTACAGGACGATGCGCTTGAAGTAAGAATTGGCCT
TAACTCGGCGGGAATGAGTGAGAGCAGTCTCCCATCGCTTGCTAGTGGAG
GTATGGAGGGAGGGCGGAAGGGAGGGCAGGAGGGAGGGCGGGAGGTTGCA
AGGCTGCACGCGATAGGTTGACGCGTGTTCCTCCCCGCTTCCACCCCTAC
CCACAAACATGGACCGGGCGGGTAGAAAAGGAGGCCGTTGGCGTGGATGG
GCGCGCCCCCCTGTATGGCACGCCCTCCGTCGGTGCTGCACCCGATGTCA
GGGGGCAGACACACAGACAAGGACAACAGCTGGAGCAGCTACCCTTGCTG
CAGCGGCAGCCGAGGAAGAAGAAGAAGTGGATCGCGTCCTGGTTCACGCC
CTCTTTCGTGATTGTGGCCCTGGTGGTGTTGAACGGCGACAGCGCGCGAG
G

protein sequence of rna9990

>rna9990-protein ID=rna9990-protein|Name=rna9990|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MQQEARRLQRHLPDASIVRLEGSGHISLDARVNMTDILMRHPKLFAQPKA
QREKDYVRDFVKPSPQYIERYMNIVEQYLGTPSNPSPSRPPCFLPSLLST
LCLQFPSP

mRNA from alignment at KK037259.1:66901..67788-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9990 ID=rna9990|Name=rna9990|organism=Nannochloropsis gaditana|type=mRNA|length=888bp|location=Sequence derived from alignment at KK037259.1:66901..67788- (Nannochloropsis gaditana)
ATGCAACAGGAGGCCCGCCGGTTACAGCGGCATTTGCCTGACGCCTCCAT
CGTGCGGTTGGAAGGCTCTGGGCACATCTCTCTCGACGCTCGCGTCAACA
TGACCGACATCCTCATGCGTCATCCCAAGCTCTTCGCCCAGGTCCTCCTT
CCCGCCCTCCCTCCCTCCCTCCCTCGCCCTTCCTCTGTCTCCTATCTTTT
CCCTCCTTTTTTCTTTTGTTCCTCCATCAGATTCTCCATGCATCCGTGTA
GATTCCTCCGTTTTTCCCGTCCGTATTTTGGAAACCTCATCGGGAATAAA
GCCTTCCCTCCCTCCCTCCCACCTTCCGTCCCTCCTTCATGCCCTCCAGC
CCAAGGCTCAGAGAGAGAAGGACTACGTGCGCGACTTTGTCAAGCCCTCT
CCTCAGTACATTGAACGGTGAGAATGAAGAAGAGGGAGGGCGGGACGGCG
GGAGGGATGGAGGGACGAATGGCTTCGGGCAAGAAGAAGAGTTCTATTTA
ACGCCAGATGGGAATGACTGTCGGGAGGCTGGGAGTCCAAGTTAACCTCC
ACCACAGGTTTTCCTGCCTCTGCGACCAAGGGGGCTCAACCGTATTTCCT
CCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTTCCTCCCTCCCTCC
CTTCCTCCCCCCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTCCT
CCTTCCCTCCCTCCCCTCTGTAGCTACATGAACATCGTCGAGCAGTACCT
CGGTCGCTTTACCTCTCCTGCCTTTTTCTCCACCATGTCTGATGGCCAGG
TACTCCTTCCAACCCCTCTCCCTCCCGTCCTCCCTGCTTCCTCCCCTCTC
TCCTTTCCACCCTTTGTCTTCAATTTCCCTCCCCTTAA

Coding sequence (CDS) from alignment at KK037259.1:66901..67788-

>rna9990 ID=rna9990|Name=rna9990|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at KK037259.1:66901..67788- (Nannochloropsis gaditana)
GTACTCCTTCCAACCCCTCTCCCTCCCGTCCTCCCTGCTTCCTCCCCTCT
CTCCTTTCCACCCTTTGTCTTCAATTTCCCTCCCCTTAACTACATGAACA
TCGTCGAGCAGTACCTCGCCCAAGGCTCAGAGAGAGAAGGACTACGTGCG
CGACTTTGTCAAGCCCTCTCCTCAGTACATTGAACGATGCAACAGGAGGC
CCGCCGGTTACAGCGGCATTTGCCTGACGCCTCCATCGTGCGGTTGGAAG
GCTCTGGGCACATCTCTCTCGACGCTCGCGTCAACATGACCGACATCCTC
ATGCGTCATCCCAAGCTCTTCGCCCAGGTACTCCTTCCAACCCCTCTCCC
TCCCGTCCTCCCTGCTTCCTCCCCTCTCTCCTTTCCACCCTTTGTCTTCA
ATTTCCCTCCCCTTAACTACATGAACATCGTCGAGCAGTACCTCGCCCAA
GGCTCAGAGAGAGAAGGACTACGTGCGCGACTTTGTCAAGCCCTCTCCTC
AGTACATTGAACGATGCAACAGGAGGCCCGCCGGTTACAGCGGCATTTGC
CTGACGCCTCCATCGTGCGGTTGGAAGGCTCTGGGCACATCTCTCTCGAC
GCTCGCGTCAACATGACCGACATCCTCATGCGTCATCCCAAGCTCTTCGC
CCAGGTACTCCTTCCAACCCCTCTCCCTCCCGTCCTCCCTGCTTCCTCCC
CTCTCTCCTTTCCACCCTTTGTCTTCAATTTCCCTCCCCTTAACTACATG
AACATCGTCGAGCAGTACCTCGCCCAAGGCTCAGAGAGAGAAGGACTACG
TGCGCGACTTTGTCAAGCCCTCTCCTCAGTACATTGAACGATGCAACAGG
AGGCCCGCCGGTTACAGCGGCATTTGCCTGACGCCTCCATCGTGCGGTTG
GAAGGCTCTGGGCACATCTCTCTCGACGCTCGCGTCAACATGACCGACAT
CCTCATGCGTCATCCCAAGCTCTTCGCCCAGGTACTCCTTCCAACCCCTC
TCCCTCCCGTCCTCCCTGCTTCCTCCCCTCTCTCCTTTCCACCCTTTGTC
TTCAATTTCCCTCCCCTTAACTACATGAACATCGTCGAGCAGTACCTCGC
CCAAGGCTCAGAGAGAGAAGGACTACGTGCGCGACTTTGTCAAGCCCTCT
CCTCAGTACATTGAACGATGCAACAGGAGGCCCGCCGGTTACAGCGGCAT
TTGCCTGACGCCTCCATCGTGCGGTTGGAAGGCTCTGGGCACATCTCTCT
CGACGCTCGCGTCAACATGACCGACATCCTCATGCGTCATCCCAAGCTCT
TCGCCCAG

Synonyms

Publications