rna9988, rna9988 (mRNA) Nannochloropsis gaditana

Overview
Namerna9988
Unique Namerna9988
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1532
Alignment locationKK037259.1:64254..64610 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100385g4.2317.mrna
Orig protein idgnl|cribi|Naga_100385g4.2317
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:64254..64610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100385g4gene9689Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9988rna9988-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20715.1cds9957Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9988 ID=rna9988|Name=rna9988|organism=Nannochloropsis gaditana|type=mRNA|length=1532bp
GATAAATTTGCGTCATCCTCTGCGATTTCCTCACTCATTCCATCTCTCGC
TATCAACCTCCCCCAATTCAAAATCCATGCCAAACAGGTGCCCCACCTGG
CATCAATTATCCGGCAATTTTTGATCATACATGTAATTTATCGGCCGAGC
TGCTTCAAATATGTCTTATCTTTTACCCTCTACCATCGCCATCCCGCGCT
GGCGCCTCCCTTTTCCCCAGTATTTCTCCCTGCCTCTTCTCCTTCTCCTG
GTGGTTGACCTCCTCAACCGGACCCATGCCTTCCAAGCGGGCCGGCTAGC
GTTGAAGCATCTCAATGAAGGTATTAGGTCTCCGCCACTCATGTTGCAAA
GGCCCTGTTGGCCTCTCCGTGTGAAGGGCGCAGACCTTCCGCCATCCTCT
TCGTCGACTACCGCCGCCGTCACGTCCTCCTCCTCTTACACACAAGCGGC
TTCCGTCGCCATATTGCGGGACGCTGCGCGTCACAGGAAAGTCGATAAAT
CTCAGGTGATAGCCGCCCTCGAGGTCCTGGAAGGGTCGAAGCTCCCCTCT
CCCTCTTCCAAAAAGCCCGGCATCCTCTCCACCCTGTTCCCCGCGTCCGG
CACGCCCTCCCTTCTTTCCTCGCTTCTAGAGGCCGGGGGGGACAAAGGGG
GCGAGTGGGAGATTGTTTTCTCCTCCCTCCTAGGAGCCGGCTATATGCCT
GCCCTCGTATGCGAGGTGGTGTCCGTAAGCGCCTTGTCCTCTCCCTCCTC
CTCTCCCTCCTCCTCGCCCTCGGCTCCACTCCCTGCGTCTCGCCCCATCC
GTATTGACACCTCAGCAGCGGGCGGCCTTCTGCCCCTGGGATGTGTCGTG
GGAGACTATGTGTGGGAAGGAAACAAAATGACCTTTGGCTTCAATCGATT
CGAGCTCGGGCCTTTGTCACTCCAATTGGGGAAAAAAATGAAATTCTATA
CATTCTTCTGGGTTGACGATCAGATTGCATGCGCAAGGAGTAGCACTGGG
GGCCTGACTTTGATGCTTGTTAATTCTGAAAGATAAAATTAGAGGCAGGG
TGATAAACATCTATGACGTCGATGAGGCTTGTTGCAAACGAAATAGAGTC
TTTCTCGAAGTCTTCAATTTATATCTTACTATTTTACCTTCGCAGTCAAG
CATTCATAAAGTATTCGTGTTCAAGAATAAAATTCTTTGATATTCCATTT
TCTTCGTGTATGGTGTTATCTTACAAGTAACCATGTTTGACCGCAAATAT
CTCGGGTACAGACAAATACCCCCCTTAATTCCACCACGACGATGCGTGTA
GCTGTGTTTGCTTGTAGTAAGGTTGAATAAAGCCATGGACATGAGGTAAC
TCTTGTACTCATGAGGGCTGATCCATCTTGCTTTAGGGTTTTTTGAACGT
CCGTAGGCATCGACGTTCAAAATTTCAAACTGCGAGTGTCTCAAGAAACG
GTCAGCGCTCGGAGCTGCAGCGTGACTAGTATTTTCGTGCACCTGGGCAT
GGTTTGAAACAAAAAGTTTTGGAAGGACTTCA
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protein sequence of rna9988

>rna9988-protein ID=rna9988-protein|Name=rna9988|organism=Nannochloropsis gaditana|type=polypeptide|length=75bp
MRSILSRLCQVVDAKESWIYREFARPCKICPEGFLLKHPWLQNRSMTRRS
RQKLTLILWQNLLSCNLLMLYVISL
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mRNA from alignment at KK037259.1:64254..64610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9988 ID=rna9988|Name=rna9988|organism=Nannochloropsis gaditana|type=mRNA|length=357bp|location=Sequence derived from alignment at KK037259.1:64254..64610- (Nannochloropsis gaditana)
ATGAGAAGTATCCTCTCTAGACTATGCCAAGTCGTTGACGCGAAGGAATC TTGGATTTATCGGGAATTTGCAAGGCCCTGTAAAATTTGCCCTGAGGGTT TTTTATTAAAGTCTTAATGCGTTCTGCTGCATTAAGGCGTTATTTAACAT TCTAGGAATCAAGCCTCATTCATTTGATGTAAATCGCGTGTAAAAATGGG TTAGAGTCGTTTCGTGTTATCACGCTTCCGCCCTCAAAGACATCCTTGGC TCCAGAACCGCAGCATGACTAGAAGGTCGCGACAAAAACTAACATTAATT TTGTGGCAAAATCTTTTGTCTTGTAATCTACTGATGCTTTATGTCATATC GCTGTAG
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Coding sequence (CDS) from alignment at KK037259.1:64254..64610-

>rna9988 ID=rna9988|Name=rna9988|organism=Nannochloropsis gaditana|type=CDS|length=456bp|location=Sequence derived from alignment at KK037259.1:64254..64610- (Nannochloropsis gaditana)
ACATCCTTGGCTCCAGAACCGCAGCATGACTAGAAGGTCGCGACAAAAAC
TAACATTAATTTTGTGGCAAAATCTTTTGTCTTGTAATCTACTGATGCTT
TATGTCATATCGCTGTAGATGAGAAGTATCCTCTCTAGACTATGCCAAGT
CGTTGACGCGAAGGAATCTTGGATTTATCGGGAATTTGCAAGGCCCTGTA
AAATTTGCCCTGAGGGTTTTTTATTAAAACATCCTTGGCTCCAGAACCGC
AGCATGACTAGAAGGTCGCGACAAAAACTAACATTAATTTTGTGGCAAAA
TCTTTTGTCTTGTAATCTACTGATGCTTTATGTCATATCGCTGTAGATGA
GAAGTATCCTCTCTAGACTATGCCAAGTCGTTGACGCGAAGGAATCTTGG
ATTTATCGGGAATTTGCAAGGCCCTGTAAAATTTGCCCTGAGGGTTTTTT
ATTAAA
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Synonyms
Publications