rna9984, rna9984 (mRNA) Nannochloropsis gaditana

Overview
Namerna9984
Unique Namerna9984
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length885
Alignment locationKK037259.1:52081..53083 -

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Properties
Property NameValue
Productplastid terminal oxidase
Orig transcript idgnl|cribi|Naga_102184g1.7263.mrna
Orig protein idgnl|cribi|Naga_102184g1.7263
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:52081..53083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102184g1gene9685Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9984rna9984-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20720.1cds9953Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9984 ID=rna9984|Name=rna9984|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
GGAAAAGATGAAGCCGGCACATCCGTGTTGTACACAGGTCCTTCGTGGAT
GATGAAGACATTTCTGATACTCTCACTTCTCACATGCCCTCTTCTACTTT
CTTCCTGTCTATTCGGTTTTTCTCTTTCCCTTCCTGCCTCCCTCTCCCTC
ATCTCTCAGCCTACTACTGGATTTTGAACCTGATGTTCCTCATCTCCCCC
CGCCTTGCCTACAATTTCTCGGAGCTGATCGAGAGCCACGCAGTGGACAC
CTACTCCCAATTCTTGGACGAGAACGAGGACCTCCTTAGGCGCTTGCCCG
CCCCTCGCGTCGCACTAGACTACTACGTGATGGGTGACCTCTACATGTTC
GATGAATTTCAAACCACTCGACCCGTCCAAACCCGCCGGCCCCTGATCCG
CTCCCTCTACGATGTCTTCAGCGCCATCCGCGACGACGAGAGCGAGCACG
TGAAAACCATCAATGCCTGTCAAGTGGCGGACGAGGTCATCCTTTCTCCC
AACGCCGCCGCCGCCCACGCGGCATGGGCCGAGCAGGTGGAGGAGGAGGA
GGAGGAAGAAGTGGCGCGGAGCGTGGAGGAGGAGTGGTGGCGGGAGTATG
ATGCTTTGGGGAAGGGGCGGGGTTGGGATGGGGAGGGTGGGGAGGGCGGG
GGGGAGGGAGGAGAATGGGGAGAGGAGGTGGAATTCGAATGAAAGGCCGG
TGCGTGCTCGGGCCTCGTGTTGCGATGGACTGTCTTTTTTTTCACATATG
TCTACCATAGAAATAAGCGCCTTGTTTTTTGGGGGGGTCTCAATGGACAA
TGCGCGATGGACTGTCTTTTTTTTCACATATGTCTACCATAGAAATAAGC
GCCTTGTTTTTTGGGGGGGTCTCAATGGACAATGC
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protein sequence of rna9984

>rna9984-protein ID=rna9984-protein|Name=rna9984|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MYRRQVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAA
KMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYIS
MLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLA
RHS
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mRNA from alignment at KK037259.1:52081..53083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9984 ID=rna9984|Name=rna9984|organism=Nannochloropsis gaditana|type=mRNA|length=1003bp|location=Sequence derived from alignment at KK037259.1:52081..53083- (Nannochloropsis gaditana)
AGACGTGGAACTCGACTTTATGTATCGGCGGCAGGTGGTAAATTTGCAAG
CCAAACTTCGCCTTCTCACGCTCTCCAACGAGGTAAGAGTACCGCAGCCG
CCCTCCCTCCCCACCCTCTCTCCCTCCCTCCCTCCTTCCCGTCCTCACTC
TCCTCTCGTTCCATTGTCCCTTGGTATAGGCGATCACGAGGCGGGAAGAA
ATTCGGCGCGAGATTCAAATGGACCTGATTGATGAAGGTAACCCCCCTCC
CTCCCTCCCTCCCCTCTTTCCCTCCCTCCCTCCTCCTCTCCCCTCTACCT
TCCTTCGCGTCTTCGCCTACCCCTCTCTCCCTCCCTCCCTCCAGCCCAAG
CCCAAGGAGTGAGTGTCGCTGCCAAGATGAAGCAGTCCGAGACCCCGTGG
TTCGTCCTCCTCCCCTACTATGCCCTGTGCGCCTTCCTAGACGCTGTCTA
CGAAGGAAGGCCGCTCGCACGTTTCTGGTTCCTGGAGACGGTGGCTCGGT
CCGTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTGCTCCGCAAGGCC
CTCGTTCTTATTTCGTTTCTTCATTTGTTTTATCGGGCCGCTCTCCTCTC
ATCGCGTCCGCCGCCTCTTTCTCCCCCCCGCAGGATGCCCTACTTCTCCT
ACATCAGCATGCTCCATCTCTACGAGACCTTGGGCTGGTGGACGATAGGG
ACGGACGTGAGGCGGGTGCACTTCGCGGAAGGTAGGGAGGGAGGGTGGGA
GGGAGGGTGAGAGGGAGGAAGGGCGGGGTTGTTGAGATGTCGTCCCATGA
GCGTATCCGGTCGCCAGAGAAAAGAGACGAAGAGCCAGGGGCACGCAACA
TTCTCACCGCTTCGGTCCTCACTTACTCCTCCCTCCCTCCTCCCTTCCCT
CCTCCCCCCCCTCAACAGAATGGAACGAGCTTCATCACCTGCAGATCATG
GAGTCCCTGGGAGGGGACGCTCGATGGCTCGATCGCTTTCTGGCCCGCCA
CTC
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Coding sequence (CDS) from alignment at KK037259.1:52081..53083-

>rna9984 ID=rna9984|Name=rna9984|organism=Nannochloropsis gaditana|type=CDS|length=2290bp|location=Sequence derived from alignment at KK037259.1:52081..53083- (Nannochloropsis gaditana)
AATGGAACGAGCTTCATCACCTGCAGATCATGGAGTCCCTGGGAGGGGAC
GCTCGATGGCTCGATCGCTTTCTGGCCCGCCACTCGATGCCCTACTTCTC
CTACATCAGCATGCTCCATCTCTACGAGACCTTGGGCTGGTGGACGATAG
GGACGGACGTGAGGCGGGTGCACTTCGCGGAAGCCCAAGCCCAAGGAGTG
AGTGTCGCTGCCAAGATGAAGCAGTCCGAGACCCCGTGGTTCGTCCTCCT
CCCCTACTATGCCCTGTGCGCCTTCCTAGACGCTGTCTACGAAGGAAGGC
CGCTCGCACGTTTCTGGTTCCTGGAGACGGTGGCTCGGCGATCACGAGGC
GGGAAGAAATTCGGCGCGAGATTCAAATGGACCTGATTGATGAAGATGTA
TCGGCGGCAGGTGGTAAATTTGCAAGCCAAACTTCGCCTTCTCACGCTCT
CCAACGAGAATGGAACGAGCTTCATCACCTGCAGATCATGGAGTCCCTGG
GAGGGGACGCTCGATGGCTCGATCGCTTTCTGGCCCGCCACTCGATGCCC
TACTTCTCCTACATCAGCATGCTCCATCTCTACGAGACCTTGGGCTGGTG
GACGATAGGGACGGACGTGAGGCGGGTGCACTTCGCGGAAGCCCAAGCCC
AAGGAGTGAGTGTCGCTGCCAAGATGAAGCAGTCCGAGACCCCGTGGTTC
GTCCTCCTCCCCTACTATGCCCTGTGCGCCTTCCTAGACGCTGTCTACGA
AGGAAGGCCGCTCGCACGTTTCTGGTTCCTGGAGACGGTGGCTCGGCGAT
CACGAGGCGGGAAGAAATTCGGCGCGAGATTCAAATGGACCTGATTGATG
AAGATGTATCGGCGGCAGGTGGTAAATTTGCAAGCCAAACTTCGCCTTCT
CACGCTCTCCAACGAGAATGGAACGAGCTTCATCACCTGCAGATCATGGA
GTCCCTGGGAGGGGACGCTCGATGGCTCGATCGCTTTCTGGCCCGCCACT
CGATGCCCTACTTCTCCTACATCAGCATGCTCCATCTCTACGAGACCTTG
GGCTGGTGGACGATAGGGACGGACGTGAGGCGGGTGCACTTCGCGGAAGC
CCAAGCCCAAGGAGTGAGTGTCGCTGCCAAGATGAAGCAGTCCGAGACCC
CGTGGTTCGTCCTCCTCCCCTACTATGCCCTGTGCGCCTTCCTAGACGCT
GTCTACGAAGGAAGGCCGCTCGCACGTTTCTGGTTCCTGGAGACGGTGGC
TCGGCGATCACGAGGCGGGAAGAAATTCGGCGCGAGATTCAAATGGACCT
GATTGATGAAGATGTATCGGCGGCAGGTGGTAAATTTGCAAGCCAAACTT
CGCCTTCTCACGCTCTCCAACGAGAATGGAACGAGCTTCATCACCTGCAG
ATCATGGAGTCCCTGGGAGGGGACGCTCGATGGCTCGATCGCTTTCTGGC
CCGCCACTCGATGCCCTACTTCTCCTACATCAGCATGCTCCATCTCTACG
AGACCTTGGGCTGGTGGACGATAGGGACGGACGTGAGGCGGGTGCACTTC
GCGGAAGCCCAAGCCCAAGGAGTGAGTGTCGCTGCCAAGATGAAGCAGTC
CGAGACCCCGTGGTTCGTCCTCCTCCCCTACTATGCCCTGTGCGCCTTCC
TAGACGCTGTCTACGAAGGAAGGCCGCTCGCACGTTTCTGGTTCCTGGAG
ACGGTGGCTCGGCGATCACGAGGCGGGAAGAAATTCGGCGCGAGATTCAA
ATGGACCTGATTGATGAAGATGTATCGGCGGCAGGTGGTAAATTTGCAAG
CCAAACTTCGCCTTCTCACGCTCTCCAACGAGAATGGAACGAGCTTCATC
ACCTGCAGATCATGGAGTCCCTGGGAGGGGACGCTCGATGGCTCGATCGC
TTTCTGGCCCGCCACTCGATGCCCTACTTCTCCTACATCAGCATGCTCCA
TCTCTACGAGACCTTGGGCTGGTGGACGATAGGGACGGACGTGAGGCGGG
TGCACTTCGCGGAAGCCCAAGCCCAAGGAGTGAGTGTCGCTGCCAAGATG
AAGCAGTCCGAGACCCCGTGGTTCGTCCTCCTCCCCTACTATGCCCTGTG
CGCCTTCCTAGACGCTGTCTACGAAGGAAGGCCGCTCGCACGTTTCTGGT
TCCTGGAGACGGTGGCTCGGCGATCACGAGGCGGGAAGAAATTCGGCGCG
AGATTCAAATGGACCTGATTGATGAAGATGTATCGGCGGCAGGTGGTAAA
TTTGCAAGCCAAACTTCGCCTTCTCACGCTCTCCAACGAG
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Synonyms
Publications