EWM20720.1, cds9953 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|585100567|gb|EWM20720.1| (plastid terminal oxidase, partial [Nannochloropsis gaditana]) HSP 1 Score: 316.62 bits (810), Expect = 1.956e-109 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 Query: 1 MYRRQVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 MYRRQVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS Sbjct: 1 MYRRQVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|298710389|emb|CBJ25453.1| (alternative oxidase, mitochondrial protein [Ectocarpus siliculosus]) HSP 1 Score: 193.356 bits (490), Expect = 1.844e-55 Identity = 89/149 (59.73%), Postives = 113/149 (75.84%), Query Frame = 0 Query: 5 QVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 +VV+LQ +L L LSN+AI RE R +++ +G+ A + +S+TPW+V+ PY ALC FLD V+E RP+ RFWFLETVARMPYFSY+SML LYETLGWW+ +VR+VHFAEE+NE+ HL+IMESLGGD RW DRFLARH+ Sbjct: 260 EVVDLQNRLNELKLSNKAIEDRETARIAATKAFLEDESRKGLRAAGYILRSQTPWYVMAPYKALCWFLDVVFEDRPIQRFWFLETVARMPYFSYLSMLFLYETLGWWSGAAEVRKVHFAEEYNEMQHLRIMESLGGDTRWSDRFLARHA 408
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|302782501|ref|XP_002973024.1| (hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii] >gi|300159625|gb|EFJ26245.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]) HSP 1 Score: 174.481 bits (441), Expect = 6.971e-52 Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 0 Query: 8 NLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 +L+ L LTL+ +A+ RE R + E PW++L PYYALC LD ++EGRP+ RFWFLETVARMPYFSYISMLHLYETLGWW +G DVR+VHFAEEWNE+HHL+IMESLGGD W DRF +H+ Sbjct: 10 DLRKALAKLTLNRDAVWERERNRPPV----------------------EAPWWILGPYYALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEWNEMHHLKIMESLGGDLLWGDRFFGQHA 133
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|302805482|ref|XP_002984492.1| (hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii] >gi|300147880|gb|EFJ14542.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]) HSP 1 Score: 174.481 bits (441), Expect = 8.206e-52 Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 0 Query: 8 NLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 +L+ L LTL+ +A+ RE R + E PW++L PYYALC LD ++EGRP+ RFWFLETVARMPYFSYISMLHLYETLGWW +G DVR+VHFAEEWNE+HHL+IMESLGGD W DRF +H+ Sbjct: 10 DLRKALAKLTLNRDAVWERERNRPPV----------------------EAPWWILGPYYALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEWNEMHHLKIMESLGGDLLWGDRFFGQHA 133
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|971520002|dbj|GAQ78184.1| (Hypothetical protein KFL_000090280 [Klebsormidium nitens]) HSP 1 Score: 178.718 bits (452), Expect = 1.109e-50 Identity = 81/145 (55.86%), Postives = 99/145 (68.28%), Query Frame = 0 Query: 9 LQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 L+ KL L LSN+ + RE R + E PW++L PYY LC LD ++ GRP+ RFWFLETVARMPYFSYISMLHLYETLGWW +G +VR+VHFAEEWNE+HHL+IMESLGGD +W+DRF +H+ Sbjct: 284 LRKKLSQLKLSNDKVWERERSRPAV----------------------EAPWYILGPYYFLCLILDVIFNGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGAEVRKVHFAEEWNEMHHLKIMESLGGDNQWVDRFFGQHA 406
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|404325822|gb|AFR58668.1| (plastid terminal oxidase [Dunaliella salina]) HSP 1 Score: 169.088 bits (427), Expect = 1.142e-47 Identity = 83/146 (56.85%), Postives = 98/146 (67.12%), Query Frame = 0 Query: 8 NLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 ++ KL+ LTLSN+A+ RE R + G V ET W++ L Y A+C LD VY RPL RFWFLETVARMPYFSYIS +HLYETLGWW ++R++HFAEEWNELHHLQIME+LGGD W DRFLA HS Sbjct: 199 KIRQKLQQLTLSNKAVAEREHTR-----------ERSGGKV-------ETTWYIRLLYDAVCLMLDVVYNNRPLQRFWFLETVARMPYFSYISCIHLYETLGWWRAAAELRKIHFAEEWNELHHLQIMEALGGDCMWFDRFLAYHS 326
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|404325818|gb|AFR58666.1| (plastid terminal oxidase [Dunaliella salina]) HSP 1 Score: 168.318 bits (425), Expect = 2.229e-47 Identity = 82/141 (58.16%), Postives = 98/141 (69.50%), Query Frame = 0 Query: 13 LRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 L+ LTLSN+A++ RE IR ++ G V ET W++ L Y A+C LD VY RP+ RFWFLETVARMPYFSYIS +HLYETLGWW ++R++HFAEEWNELHHLQIME+LGGD W DRFLA HS Sbjct: 204 LQQLTLSNKAVSEREHIR-----------ESSGGKV-------ETTWYIRLLYDAVCLMLDLVYNNRPIQRFWFLETVARMPYFSYISCIHLYETLGWWRAAAELRKIHFAEEWNELHHLQIMEALGGDRLWFDRFLAYHS 326
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|873232647|emb|CEM05282.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 170.629 bits (431), Expect = 6.103e-47 Identity = 86/159 (54.09%), Postives = 105/159 (66.04%), Query Frame = 0 Query: 5 QVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQS----------ETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 + L+ +L L L N+A+ RREE R E +M + E S + +P + +PY LC LD +Y RP+ RFWFLETVARMPYF+YISMLHLYETLGWW +GT+VR+VHFAEEWNE+HHL IMESLGGD WLDRFLARH+ Sbjct: 366 NTIRLRQELSRLRLDNDAVWRREEERVE-KMKFLLEKHKDKQSAPPDTDLAVDYDTIKTYFNSPLLLKIPYLFLCWLLDVLYNERPIQRFWFLETVARMPYFAYISMLHLYETLGWWRVGTEVRKVHFAEEWNEMHHLFIMESLGGDQAWLDRFLARHA 523
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|1004145659|gb|KXZ53636.1| (hypothetical protein GPECTOR_6g553 [Gonium pectorale]) HSP 1 Score: 164.851 bits (416), Expect = 7.319e-47 Identity = 81/153 (52.94%), Postives = 103/153 (67.32%), Query Frame = 0 Query: 5 QVVN----LQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153 Q++N ++ KL+ L LSN+A+ RE R E +GV +TPWF+ Y +LC LD +++ RP+ RFWFLETVARMPYFSYI+MLHLYE+ GWW G ++R++HFAEEWNELHHLQIMESLGGD W DRF A H+ Sbjct: 100 QLINECQEIRVKLKQLKLSNKAVWDREHAR---------EKAGKGV---------KTPWFIKGVYLSLCYLLDFLFDNRPVQRFWFLETVARMPYFSYITMLHLYESFGWWRAGAELRKIHFAEEWNELHHLQIMESLGGDQLWFDRFAALHA 234
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|926798649|ref|XP_013906748.1| (Alternative oxidase 4 [Monoraphidium neglectum] >gi|761978047|gb|KIZ07729.1| Alternative oxidase 4 [Monoraphidium neglectum]) HSP 1 Score: 171.4 bits (433), Expect = 7.764e-47 Identity = 84/147 (57.14%), Postives = 101/147 (68.71%), Query Frame = 0 Query: 5 QVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLAR 151 Q ++AKL+ LTLSN + RE R EA+ G+ ETPW V Y ALC FLD Y+ RP+ RFWFLETVARMPYFSY++MLHL ETLGWW G ++R+VHFAEEWNELHHLQIME+LGGD W+DRF+A+ Sbjct: 521 QCREVRAKLQQLTLSNAKVWEREHKR---------EAEGGGI---------ETPWVVKAVYLALCVFLDVAYDKRPIQRFWFLETVARMPYFSYLTMLHLLETLGWWRAGAELRKVHFAEEWNELHHLQIMEALGGDQLWIDRFMAQ 649 The following BLAST results are available for this feature:
BLAST of EWM20720.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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