EWM20720.1, cds9953 (CDS) Nannochloropsis gaditana

Overview
NameEWM20720.1
Unique Namecds9953
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:53002..53064 -
Alignment locationKK037259.1:52847..52904 -
Alignment locationKK037259.1:52586..52739 -
Alignment locationKK037259.1:52353..52450 -
Alignment locationKK037259.1:52081..52165 -

Link to JBrowse

Properties
Property NameValue
Start range52081
Start range.
Protein idEWM20720.1
Productplastid terminal oxidase
Partialtrue
Orig transcript idgnl|cribi|Naga_102184g1.7263.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:53002..53064 -
KK037259.1supercontigKK037259.1:52847..52904 -
KK037259.1supercontigKK037259.1:52586..52739 -
KK037259.1supercontigKK037259.1:52353..52450 -
KK037259.1supercontigKK037259.1:52081..52165 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009916alternative oxidase activity
Vocabulary: INTERPRO
TermDefinition
IPR002680AOX
Homology
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|585100567|gb|EWM20720.1| (plastid terminal oxidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 316.62 bits (810), Expect = 1.956e-109
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    1 MYRRQVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
            MYRRQVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS
Sbjct:    1 MYRRQVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|298710389|emb|CBJ25453.1| (alternative oxidase, mitochondrial protein [Ectocarpus siliculosus])

HSP 1 Score: 193.356 bits (490), Expect = 1.844e-55
Identity = 89/149 (59.73%), Postives = 113/149 (75.84%), Query Frame = 0
Query:    5 QVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
            +VV+LQ +L  L LSN+AI  RE  R       +++   +G+  A  + +S+TPW+V+ PY ALC FLD V+E RP+ RFWFLETVARMPYFSY+SML LYETLGWW+   +VR+VHFAEE+NE+ HL+IMESLGGD RW DRFLARH+
Sbjct:  260 EVVDLQNRLNELKLSNKAIEDRETARIAATKAFLEDESRKGLRAAGYILRSQTPWYVMAPYKALCWFLDVVFEDRPIQRFWFLETVARMPYFSYLSMLFLYETLGWWSGAAEVRKVHFAEEYNEMQHLRIMESLGGDTRWSDRFLARHA 408          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|302782501|ref|XP_002973024.1| (hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii] >gi|300159625|gb|EFJ26245.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii])

HSP 1 Score: 174.481 bits (441), Expect = 6.971e-52
Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 0
Query:    8 NLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
            +L+  L  LTL+ +A+  RE  R  +                      E PW++L PYYALC  LD ++EGRP+ RFWFLETVARMPYFSYISMLHLYETLGWW +G DVR+VHFAEEWNE+HHL+IMESLGGD  W DRF  +H+
Sbjct:   10 DLRKALAKLTLNRDAVWERERNRPPV----------------------EAPWWILGPYYALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEWNEMHHLKIMESLGGDLLWGDRFFGQHA 133          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|302805482|ref|XP_002984492.1| (hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii] >gi|300147880|gb|EFJ14542.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii])

HSP 1 Score: 174.481 bits (441), Expect = 8.206e-52
Identity = 83/146 (56.85%), Postives = 100/146 (68.49%), Query Frame = 0
Query:    8 NLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
            +L+  L  LTL+ +A+  RE  R  +                      E PW++L PYYALC  LD ++EGRP+ RFWFLETVARMPYFSYISMLHLYETLGWW +G DVR+VHFAEEWNE+HHL+IMESLGGD  W DRF  +H+
Sbjct:   10 DLRKALAKLTLNRDAVWERERNRPPV----------------------EAPWWILGPYYALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEWNEMHHLKIMESLGGDLLWGDRFFGQHA 133          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|971520002|dbj|GAQ78184.1| (Hypothetical protein KFL_000090280 [Klebsormidium nitens])

HSP 1 Score: 178.718 bits (452), Expect = 1.109e-50
Identity = 81/145 (55.86%), Postives = 99/145 (68.28%), Query Frame = 0
Query:    9 LQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
            L+ KL  L LSN+ +  RE  R  +                      E PW++L PYY LC  LD ++ GRP+ RFWFLETVARMPYFSYISMLHLYETLGWW +G +VR+VHFAEEWNE+HHL+IMESLGGD +W+DRF  +H+
Sbjct:  284 LRKKLSQLKLSNDKVWERERSRPAV----------------------EAPWYILGPYYFLCLILDVIFNGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGAEVRKVHFAEEWNEMHHLKIMESLGGDNQWVDRFFGQHA 406          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|404325822|gb|AFR58668.1| (plastid terminal oxidase [Dunaliella salina])

HSP 1 Score: 169.088 bits (427), Expect = 1.142e-47
Identity = 83/146 (56.85%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    8 NLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
             ++ KL+ LTLSN+A+  RE  R           +  G  V       ET W++ L Y A+C  LD VY  RPL RFWFLETVARMPYFSYIS +HLYETLGWW    ++R++HFAEEWNELHHLQIME+LGGD  W DRFLA HS
Sbjct:  199 KIRQKLQQLTLSNKAVAEREHTR-----------ERSGGKV-------ETTWYIRLLYDAVCLMLDVVYNNRPLQRFWFLETVARMPYFSYISCIHLYETLGWWRAAAELRKIHFAEEWNELHHLQIMEALGGDCMWFDRFLAYHS 326          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|404325818|gb|AFR58666.1| (plastid terminal oxidase [Dunaliella salina])

HSP 1 Score: 168.318 bits (425), Expect = 2.229e-47
Identity = 82/141 (58.16%), Postives = 98/141 (69.50%), Query Frame = 0
Query:   13 LRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
            L+ LTLSN+A++ RE IR           ++ G  V       ET W++ L Y A+C  LD VY  RP+ RFWFLETVARMPYFSYIS +HLYETLGWW    ++R++HFAEEWNELHHLQIME+LGGD  W DRFLA HS
Sbjct:  204 LQQLTLSNKAVSEREHIR-----------ESSGGKV-------ETTWYIRLLYDAVCLMLDLVYNNRPIQRFWFLETVARMPYFSYISCIHLYETLGWWRAAAELRKIHFAEEWNELHHLQIMEALGGDRLWFDRFLAYHS 326          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|873232647|emb|CEM05282.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 170.629 bits (431), Expect = 6.103e-47
Identity = 86/159 (54.09%), Postives = 105/159 (66.04%), Query Frame = 0
Query:    5 QVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQS----------ETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
              + L+ +L  L L N+A+ RREE R E +M  + E      S       +           +P  + +PY  LC  LD +Y  RP+ RFWFLETVARMPYF+YISMLHLYETLGWW +GT+VR+VHFAEEWNE+HHL IMESLGGD  WLDRFLARH+
Sbjct:  366 NTIRLRQELSRLRLDNDAVWRREEERVE-KMKFLLEKHKDKQSAPPDTDLAVDYDTIKTYFNSPLLLKIPYLFLCWLLDVLYNERPIQRFWFLETVARMPYFAYISMLHLYETLGWWRVGTEVRKVHFAEEWNEMHHLFIMESLGGDQAWLDRFLARHA 523          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|1004145659|gb|KXZ53636.1| (hypothetical protein GPECTOR_6g553 [Gonium pectorale])

HSP 1 Score: 164.851 bits (416), Expect = 7.319e-47
Identity = 81/153 (52.94%), Postives = 103/153 (67.32%), Query Frame = 0
Query:    5 QVVN----LQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHS 153
            Q++N    ++ KL+ L LSN+A+  RE  R         E   +GV         +TPWF+   Y +LC  LD +++ RP+ RFWFLETVARMPYFSYI+MLHLYE+ GWW  G ++R++HFAEEWNELHHLQIMESLGGD  W DRF A H+
Sbjct:  100 QLINECQEIRVKLKQLKLSNKAVWDREHAR---------EKAGKGV---------KTPWFIKGVYLSLCYLLDFLFDNRPVQRFWFLETVARMPYFSYITMLHLYESFGWWRAGAELRKIHFAEEWNELHHLQIMESLGGDQLWFDRFAALHA 234          
BLAST of EWM20720.1 vs. NCBI_GenBank
Match: gi|926798649|ref|XP_013906748.1| (Alternative oxidase 4 [Monoraphidium neglectum] >gi|761978047|gb|KIZ07729.1| Alternative oxidase 4 [Monoraphidium neglectum])

HSP 1 Score: 171.4 bits (433), Expect = 7.764e-47
Identity = 84/147 (57.14%), Postives = 101/147 (68.71%), Query Frame = 0
Query:    5 QVVNLQAKLRLLTLSNEAITRREEIRREIQMDLIDEAQAQGVSVAAKMKQSETPWFVLLPYYALCAFLDAVYEGRPLARFWFLETVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLAR 151
            Q   ++AKL+ LTLSN  +  RE  R         EA+  G+         ETPW V   Y ALC FLD  Y+ RP+ RFWFLETVARMPYFSY++MLHL ETLGWW  G ++R+VHFAEEWNELHHLQIME+LGGD  W+DRF+A+
Sbjct:  521 QCREVRAKLQQLTLSNAKVWEREHKR---------EAEGGGI---------ETPWVVKAVYLALCVFLDVAYDKRPIQRFWFLETVARMPYFSYLTMLHLLETLGWWRAGAELRKVHFAEEWNELHHLQIMEALGGDQLWIDRFMAQ 649          
The following BLAST results are available for this feature:
BLAST of EWM20720.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100567|gb|EWM20720.1|1.956e-109100.00plastid terminal oxidase, partial [Nannochloropsis... [more]
gi|298710389|emb|CBJ25453.1|1.844e-5559.73alternative oxidase, mitochondrial protein [Ectoca... [more]
gi|302782501|ref|XP_002973024.1|6.971e-5256.85hypothetical protein SELMODRAFT_98486 [Selaginella... [more]
gi|302805482|ref|XP_002984492.1|8.206e-5256.85hypothetical protein SELMODRAFT_120335 [Selaginell... [more]
gi|971520002|dbj|GAQ78184.1|1.109e-5055.86Hypothetical protein KFL_000090280 [Klebsormidium ... [more]
gi|404325822|gb|AFR58668.1|1.142e-4756.85plastid terminal oxidase [Dunaliella salina][more]
gi|404325818|gb|AFR58666.1|2.229e-4758.16plastid terminal oxidase [Dunaliella salina][more]
gi|873232647|emb|CEM05282.1|6.103e-4754.09unnamed protein product [Vitrella brassicaformis C... [more]
gi|1004145659|gb|KXZ53636.1|7.319e-4752.94hypothetical protein GPECTOR_6g553 [Gonium pectora... [more]
gi|926798649|ref|XP_013906748.1|7.764e-4757.14Alternative oxidase 4 [Monoraphidium neglectum] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9984rna9984Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications