rna9967, rna9967 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9967
Unique Name	rna9967
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1568
Alignment location	KK037259.1:76..1819 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100261g1.1653.mrna
Orig protein id	gnl\|cribi\|Naga_100261g1.1653
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037259.1	supercontig	KK037259.1:76..1819 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100261g1	gene9669	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9967	rna9967-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20736.1	cds9936	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037259.1:76..1819-
coding sequence from alignment at KK037259.1:76..1819-

mRNA sequence

>rna9967 ID=rna9967|Name=rna9967|organism=Nannochloropsis gaditana|type=mRNA|length=1568bp
GGGGGGGAAAGATACCAAGTTCAACAAGCCACGTCACTTGCGCCCATGGG
CCGCCCGCTCTTGTTCGTGGCGGCGGGTGCGAACGAAGTGGGTGTATGGG
ATTTGGAGAAGGGGGGGGAAATGCGAGCAGTGTTTTCGCGCGGAGATGCG
CGAGGAGGTGAGACGGGAGGAGGGAGGGACGGAGGGGAGGCGGGAGCAGA
GAGGGAGGAAGGGAGGGAGGAAATGCAAAGGATCTTCGTGGAATGAATAA
GATCAAAACGAGGGAATGGATGTGGGAAGAAATGATAAAAACACGGAAGG
GGGAAAGCAAAGGGGGTGGCCTGACAGGGTACGACGGGGACTCGAACCCC
CGCAATACTCCGTGTACGGGAAATAAGTGAGGGGGAGGGAGGGTAATGGA
GAAAGTACCGGGGTAAGCGAGTCGCTTGTCTGCAATAGAAGGGGGTAGGG
GAGGGGTCGCGTGAGGACGCTAACCAGCACACGGGCCCAGCCTTCCTTTT
TTTATCCCCATCTCACCTTTCTTTCGCGCAATTTTTTGGGGGGCGGCGGA
TCACTTACTCTTCATCACAGAAGGAGCGTGGAGTGCGGGGCAGTCCCCTA
TTGACGGCGGGGGTGCCTTTATTAGAAGAAATCCCGCTGCCCTCCAGATA
CGGCGATTTCGTCCTCCCACTCAAAGCGCAAAGCGAAGCACTCCGGAGCT
TGAGTATGCATCACAGCACCGCGCCCGCGGTCCGCGCGATCATGGGCCGT
ATCTCCACCAATACGGCCACATCGTATTTGATTACAGGTTCCACGGACCA
TCACATCCGTTCCTGGGACTTCGCCTCCCCCGCCGACTGCGTCACTGTCT
CTGGCTTGGTCCCTGGTCAACCGCCCTCGGAATACCTGGCCACCTCCATC
CCGTGCGCGGACCCTTCCCGGCGGAAATCGTCGGGGAAATTGCTTGTGTG
TAGGGATAGCCCCCTTCCTCCCCTGGTGGTAACCCCTCCAAGCCAGATCC
CTCTGCGAGAGATGCGCGGCCCGGTACCTCCCCCCACCTGTCACACGGGC
GCCATCATGGACTTGAAAACAGTGGATGTCCCCGTGCGCTTGTTGCTGTC
GTGCTCGCGCGACGAAACCGTCAAAGTGTGGCGGTAGAAGATGTGCGGGA
AGCGGAGGGGGAGGGAGAAGGACAAGCGTGGGCACGGAGCAGGGGGGAAA
ATTATGGTGGCGGCCAGGAAGGAGGAGAAAGAAGAGGGAAAGGAGAATAC
GCATGTGTGCGCATGGAGCTCACAACGAAAGGAAAGGATCATGTGTACGT
TATGGATGTACATAGCATGTCAGTGAAACAACAAATTATGAAAGAAAGAC
TTTGATCAACTCCTTTGCAAGACCCTGAGTGGAGATGAGCGGCGTTAATT
GGTAGCTTCATTCTTACCCAAAACAGCCACAAGACACACGAACCTGACAA
ACAGGCCCGCGTCTGCATACCCGTACGAGCATGGCATCGAACACCGTTCC
GGCCCCGTACTACTTGGATTGTGTCTGGGTATATTATCTCATGGTATTTC
TGCCTCGCCCGCGTCGCC

protein sequence of rna9967

>rna9967-protein ID=rna9967-protein|Name=rna9967|organism=Nannochloropsis gaditana|type=polypeptide|length=283bp
MKKIHESQNTKSKWTNPATMACRRIEAMSSDEEEGGANTEGKGSQGAVMM
EQDDASISSSCTGSCNSSSSSDTGAGEGAEAYESDRVNDLADSDVHEEEA
LALVTGALDSLASPTPSGRESRKPGGAHPPTHPSYDAYAACVETLRGVAH
SLVGRPAGLEVLKKLRSTRDAFAATYLLPADAWSEWARDEATLPGGGGIK
GARILLEEKALVDMPGSVTLRLVHLALVEDDDGQKEEGAEDGRNGGEGCS
NRGKATEEAVRSGSSSAGGVPGVGSRVGRIRGR

mRNA from alignment at KK037259.1:76..1819-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9967 ID=rna9967|Name=rna9967|organism=Nannochloropsis gaditana|type=mRNA|length=1744bp|location=Sequence derived from alignment at KK037259.1:76..1819- (Nannochloropsis gaditana)
ATGAAGAAAATCCACGAATCGCAAAATACAAAATCGAAATGGACGTACGA
AAATGAAGAATAGGAATTGGAATAAACGATTTAAAAATGAAGGAAATTTA
ATGAAGAAATCTCTACGTCCAGTTAAAATTCTATCTTGAAGGTGCTTGTT
CATGATGAATGTAAGACCTAAAGTCAATTTCTGCTCAATCATTAATGAAA
ATGGGAAAATAAGGAGTGCAACAGTCAGAAATTTTGAACCCGAGCGACGC
CAGCCTTGACGACCTTCTCGGCACTACAGTAACGACATAACGCTAGAACA
TTTAAAACATTCGATAGGCTGGACCCGTTGATACAATGTGAGAGCAATCA
TGCATGGAGTTAGGCACCCAGCACGCCCCCTGTACTGCTACTAGTAGCAG
GCGACTGACTTGGGTGAGGACGTTGCCTGGTACACATAACACGCTATGCA
GAGAACTGCATTCAACTTTTGATTTGATAGTTGCCACTTAAATTGCAACA
ATTATTATCATTCGCATGCAGGTGATGGGTTTTGCAGGGGGGGGGGGAAC
GAAAAGTTCCCCTAACAGGCAAGCACGGCCCCTGTGCGTTGCGGTGTCGG
CGAGGAAGCAGCGAGGTCGAGGTGGAGGCTCGTCGCGTCCCGGGTTCTGT
ATACTAACCACATGGGCTTCTATACTCTAAAAAATATTATTCCAGACCAC
AAGGAACCCTGCAACTATGGCATGCCGTCGCATCGAAGCAATGAGCAGTG
ATGAGGAGGAGGGTGGGGCCAATACAGAGGGGAAGGGAAGCCAAGGCGCA
GTAATGATGGAGCAAGACGACGCCTCCATCTCTTCCTCCTGCACTGGAAG
TTGTAATAGCAGCAGCAGCAGTGACACCGGCGCTGGAGAGGGTGCAGAAG
CCTACGAATCCGATAGGGTTAATGACTTGGCGGATAGCGATGTGCACGAG
GAGGAGGCCCTGGCCCTGGTAACCGGCGCACTGGACTCTTTGGCCTCTCC
TACCCCGTCTGGTAGAGAGTCTCGCAAACCCGGCGGCGCTCACCCACCCA
CGCACCCGTCGTATGATGCGTACGCAGCCTGTGTCGAGACCTTGCGGGGG
GTCGCTCACTCCCTCGTCGGCAGGCCTGCGGGTTTGGAAGTGTTGAAGAA
GCTGCGGTCCACCCGAGACGCTTTTGCGGCCACGTACCTTCTCCCTGCTG
ATGCGTGGTCAGAGTGGGCGCGCGACGAGGCCACCTTGCCGGGAGGCGGG
GGAATCAAAGGTGCGAGGATATTGTTGGAGGAGAAGGCGCTGGTGGATAT
GCCCGGTTCCGTGACGCTGCGGCTCGTGCATCTGGCCTTGGTCGAGGACG
ACGACGGTCAGAAGGAAGAAGGGGCCGAGGATGGAAGAAATGGAGGAGAG
GGGTGCTCGAACAGGGGAAAGGCTACGGAGGAAGCTGTGCGAAGTGCGTG
CGAAGCGGCGGTGGCCGCGGCGGGGATGCACGTGTTGGAAGGGCACAAGT
TGTGGGAGGCGTACAGGACCTTCGAAATGGGGGTGCTGCGCCGGGCGGGG
GATGCGCAATGGGCGATGGAGGGGGAGAGTGGGGAGGGGGGAAGGGGGGG
AAGAAGCAAGGAGGACGGGGGTGAGGAGAGGAAGGCGGAGGCGCGGGAGC
GCGTGGTGCGATTGTTCGAGCGGCAGGCGGCAGTTCCTCTGCTGGAGGGG
TGCCGGGTGTTGGAAGCAGAGTGGGACGAATTCGTGGGCGCTGA

Coding sequence (CDS) from alignment at KK037259.1:76..1819-

>rna9967 ID=rna9967|Name=rna9967|organism=Nannochloropsis gaditana|type=CDS|length=2556bp|location=Sequence derived from alignment at KK037259.1:76..1819- (Nannochloropsis gaditana)
GCGGCAGTTCCTCTGCTGGAGGGGTGCCGGGTGTTGGAAGCAGAGTGGGA
CGAATTCGTGGGCGCTGAGAACCCTGCAACTATGGCATGCCGTCGCATCG
AAGCAATGAGCAGTGATGAGGAGGAGGGTGGGGCCAATACAGAGGGGAAG
GGAAGCCAAGGCGCAGTAATGATGGAGCAAGACGACGCCTCCATCTCTTC
CTCCTGCACTGGAAGTTGTAATAGCAGCAGCAGCAGTGACACCGGCGCTG
GAGAGGGTGCAGAAGCCTACGAATCCGATAGGGTTAATGACTTGGCGGAT
AGCGATGTGCACGAGGAGGAGGCCCTGGCCCTGGTAACCGGCGCACTGGA
CTCTTTGGCCTCTCCTACCCCGTCTGGTAGAGAGTCTCGCAAACCCGGCG
GCGCTCACCCACCCACGCACCCGTCGTATGATGCGTACGCAGCCTGTGTC
GAGACCTTGCGGGGGGTCGCTCACTCCCTCGTCGGCAGGCCTGCGGGTTT
GGAAGTGTTGAAGAAGCTGCGGTCCACCCGAGACGCTTTTGCGGCCACGT
ACCTTCTCCCTGCTGATGCGTGGTCAGAGTGGGCGCGCGACGAGGCCACC
TTGCCGGGAGGCGGGGGAATCAAAGGTGCGAGGATATTGTTGGAGGAGAA
GGCGCTGGTGGATATGCCCGGTTCCGTGACGCTGCGGCTCGTGCATCTGG
CCTTGGTCGAGGACGACGACGGTCAGAAGGAAGAAGGGGCCGAGGATGGA
AGAAATGGAGGAGAGGGGTGCTCGAACAGGGGAAAGGCTACGGAGGAAGC
TGTGCGAAATGAAGAAAATCCACGAATCGCAAAATACAAAATCGAAATGG
ACGCGGCAGTTCCTCTGCTGGAGGGGTGCCGGGTGTTGGAAGCAGAGTGG
GACGAATTCGTGGGCGCTGAGAACCCTGCAACTATGGCATGCCGTCGCAT
CGAAGCAATGAGCAGTGATGAGGAGGAGGGTGGGGCCAATACAGAGGGGA
AGGGAAGCCAAGGCGCAGTAATGATGGAGCAAGACGACGCCTCCATCTCT
TCCTCCTGCACTGGAAGTTGTAATAGCAGCAGCAGCAGTGACACCGGCGC
TGGAGAGGGTGCAGAAGCCTACGAATCCGATAGGGTTAATGACTTGGCGG
ATAGCGATGTGCACGAGGAGGAGGCCCTGGCCCTGGTAACCGGCGCACTG
GACTCTTTGGCCTCTCCTACCCCGTCTGGTAGAGAGTCTCGCAAACCCGG
CGGCGCTCACCCACCCACGCACCCGTCGTATGATGCGTACGCAGCCTGTG
TCGAGACCTTGCGGGGGGTCGCTCACTCCCTCGTCGGCAGGCCTGCGGGT
TTGGAAGTGTTGAAGAAGCTGCGGTCCACCCGAGACGCTTTTGCGGCCAC
GTACCTTCTCCCTGCTGATGCGTGGTCAGAGTGGGCGCGCGACGAGGCCA
CCTTGCCGGGAGGCGGGGGAATCAAAGGTGCGAGGATATTGTTGGAGGAG
AAGGCGCTGGTGGATATGCCCGGTTCCGTGACGCTGCGGCTCGTGCATCT
GGCCTTGGTCGAGGACGACGACGGTCAGAAGGAAGAAGGGGCCGAGGATG
GAAGAAATGGAGGAGAGGGGTGCTCGAACAGGGGAAAGGCTACGGAGGAA
GCTGTGCGAAATGAAGAAAATCCACGAATCGCAAAATACAAAATCGAAAT
GGACGCGGCAGTTCCTCTGCTGGAGGGGTGCCGGGTGTTGGAAGCAGAGT
GGGACGAATTCGTGGGCGCTGAGAACCCTGCAACTATGGCATGCCGTCGC
ATCGAAGCAATGAGCAGTGATGAGGAGGAGGGTGGGGCCAATACAGAGGG
GAAGGGAAGCCAAGGCGCAGTAATGATGGAGCAAGACGACGCCTCCATCT
CTTCCTCCTGCACTGGAAGTTGTAATAGCAGCAGCAGCAGTGACACCGGC
GCTGGAGAGGGTGCAGAAGCCTACGAATCCGATAGGGTTAATGACTTGGC
GGATAGCGATGTGCACGAGGAGGAGGCCCTGGCCCTGGTAACCGGCGCAC
TGGACTCTTTGGCCTCTCCTACCCCGTCTGGTAGAGAGTCTCGCAAACCC
GGCGGCGCTCACCCACCCACGCACCCGTCGTATGATGCGTACGCAGCCTG
TGTCGAGACCTTGCGGGGGGTCGCTCACTCCCTCGTCGGCAGGCCTGCGG
GTTTGGAAGTGTTGAAGAAGCTGCGGTCCACCCGAGACGCTTTTGCGGCC
ACGTACCTTCTCCCTGCTGATGCGTGGTCAGAGTGGGCGCGCGACGAGGC
CACCTTGCCGGGAGGCGGGGGAATCAAAGGTGCGAGGATATTGTTGGAGG
AGAAGGCGCTGGTGGATATGCCCGGTTCCGTGACGCTGCGGCTCGTGCAT
CTGGCCTTGGTCGAGGACGACGACGGTCAGAAGGAAGAAGGGGCCGAGGA
TGGAAGAAATGGAGGAGAGGGGTGCTCGAACAGGGGAAAGGCTACGGAGG
AAGCTGTGCGAAATGAAGAAAATCCACGAATCGCAAAATACAAAATCGAA
ATGGAC

Synonyms

Publications