EWM20736.1, cds9936 (CDS) Nannochloropsis gaditana

Overview
NameEWM20736.1
Unique Namecds9936
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:1776..1819 -
Alignment locationKK037259.1:377..1116 -
Alignment locationKK037259.1:76..143 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20736.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100261g1.1653.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:1776..1819 -
KK037259.1supercontigKK037259.1:377..1116 -
KK037259.1supercontigKK037259.1:76..143 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20736.1 vs. NCBI_GenBank
Match: gi|585100595|gb|EWM20736.1| (hypothetical protein Naga_100261g1 [Nannochloropsis gaditana])

HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0 
Query:    1 MKKIHESQNTKSKWTNPATMACRRIEAMSSDEEEGGANTEGKGSQGAVMMEQDDASISSSCTGSCNSSSSSDTGAGEGAEAYESDRVNDLADSDVHEEEALALVTGALDSLASPTPSGRESRKPGGAHPPTHPSYDAYAACVETLRGVAHSLVGRPAGLEVLKKLRSTRDAFAATYLLPADAWSEWARDEATLPGGGGIKGARILLEEKALVDMPGSVTLRLVHLALVEDDDGQKEEGAEDGRNGGEGCSNRGKATEEAVRSGSSSAGGVPGVGSRVGRIRGR 283
            MKKIHESQNTKSKWTNPATMACRRIEAMSSDEEEGGANTEGKGSQGAVMMEQDDASISSSCTGSCNSSSSSDTGAGEGAEAYESDRVNDLADSDVHEEEALALVTGALDSLASPTPSGRESRKPGGAHPPTHPSYDAYAACVETLRGVAHSLVGRPAGLEVLKKLRSTRDAFAATYLLPADAWSEWARDEATLPGGGGIKGARILLEEKALVDMPGSVTLRLVHLALVEDDDGQKEEGAEDGRNGGEGCSNRGKATEEAVRSGSSSAGGVPGVGSRVGRIRGR
Sbjct:    1 MKKIHESQNTKSKWTNPATMACRRIEAMSSDEEEGGANTEGKGSQGAVMMEQDDASISSSCTGSCNSSSSSDTGAGEGAEAYESDRVNDLADSDVHEEEALALVTGALDSLASPTPSGRESRKPGGAHPPTHPSYDAYAACVETLRGVAHSLVGRPAGLEVLKKLRSTRDAFAATYLLPADAWSEWARDEATLPGGGGIKGARILLEEKALVDMPGSVTLRLVHLALVEDDDGQKEEGAEDGRNGGEGCSNRGKATEEAVRSGSSSAGGVPGVGSRVGRIRGR 283
[Close]
BLAST of EWM20736.1 vs. NCBI_GenBank
Match: gi|585099523|gb|EWM20141.1| (RNA recognition motif-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 440.269 bits (1131), Expect = 8.716e-153
Identity = 236/243 (97.12%), Postives = 239/243 (98.35%), Query Frame = 0 
Query:   20 MACRRIEAMSSDEEEGGANTEGKGSQGAVMMEQDDASISSSCTGSCNSSSSSDTGAGEGAEAYESDRVNDLADSDVHEEEALALVTGALDSLASPTPSGRESRKPGGAHPPTHPSYDAYAACVETLRGVAHSLVGRPAGLEVLKKLRSTRDAFAATYLLPADAWSEWARDEATLPGGGGIKGARILLEEKALVDMPGSVTLRLVHLALVEDDDGQKEEGAEDGRNGGEGCSNRGKATEEAVRS 262
            MACRRIEAMSSDEEEGGANTEGKGSQGAVMMEQDDASISSSCTGSCNSSSSSDTGAGEGAEAYESDRVNDLADSDVHEEEALALVTGALDSLASPTPSGRESRKPGGAHPPTHPSYDAY ACVETLRGVAHSLVGRPAGLEVL+KLRSTRDAFAATYLLPADAWSEWARDEATLPGGGG+K ARILLEEKALVDMPGSVTLRLVHLALVEDD+GQKEEGAEDG NGGEGCSNR KATEEAVRS
Sbjct:    1 MACRRIEAMSSDEEEGGANTEGKGSQGAVMMEQDDASISSSCTGSCNSSSSSDTGAGEGAEAYESDRVNDLADSDVHEEEALALVTGALDSLASPTPSGRESRKPGGAHPPTHPSYDAYTACVETLRGVAHSLVGRPAGLEVLEKLRSTRDAFAATYLLPADAWSEWARDEATLPGGGGVKAARILLEEKALVDMPGSVTLRLVHLALVEDDEGQKEEGAEDGGNGGEGCSNRRKATEEAVRS 243
The following BLAST results are available for this feature:
BLAST of EWM20736.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100595|gb|EWM20736.1|0.000e+0100.00hypothetical protein Naga_100261g1 [Nannochloropsi... [more]
gi|585099523|gb|EWM20141.1|8.716e-15397.12RNA recognition motif-containing protein, partial ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9967rna9967Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications