rna9966, rna9966 (mRNA) Nannochloropsis gaditana

Overview
Namerna9966
Unique Namerna9966
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length344
Alignment locationKK037258.1:121580..123498 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101106g2.8456.mrna
Orig protein idgnl|cribi|Naga_101106g2.8456
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:121580..123498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101106g2gene9668Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9966rna9966-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20739.1cds9935Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9966 ID=rna9966|Name=rna9966|organism=Nannochloropsis gaditana|type=mRNA|length=344bp
CTTTAGTGAGACAGGGACAAGATGGATCATCCCCGCATGGCCTCCAAGAC
AGGGCTGAGCAGCGGCACGGCTTCGTCGCTGGGTGTATTTGAGGTCCCTT
CAAAAACATATGGGGCTTTGGACGATGGGCTTGTTGGTCAAGGGGCAAAG
GGGGAGAGGAGATACGGAGAGAAAGAGGGAGGCGTCCCCACATTCCGGCG
GGCCTATTCCCTGAATGCCATTGGAGGTTCAGACTGGCAACTGGGTCGTC
ACGAAAATCTGGTCGCTGTTTGTCTCCTGATCGTGGCGTTGCTTTGCCTC
GGTGGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
back to top

protein sequence of rna9966

>rna9966-protein ID=rna9966-protein|Name=rna9966|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSG
LVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPL
REMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR
back to top

mRNA from alignment at KK037258.1:121580..123498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9966 ID=rna9966|Name=rna9966|organism=Nannochloropsis gaditana|type=mRNA|length=1919bp|location=Sequence derived from alignment at KK037258.1:121580..123498- (Nannochloropsis gaditana)
GGGGGGGAAAGATACCAAGTTCAACAAGCCACGTCACTTGCGCCCATGGG
CCGCCCGCTCTTGTTCGTGGCGGCGGGTGCGAACGAAGTGGGTGTATGGG
ATTTGGAGAAGGGGGGGGAAATGCGAGCAGTGTTTTCGCGCGGAGATGCG
CGAGGAGGTGAGACGGGAGGAGGGAGGGACGGAGGGGAGGCGGGAGCAGA
GAGGGAGGAAGGGAGGGAGGAAATGCAAAGGATCTTCGTGGAATGAATAA
GATCAAAACGAGGGAATGGATGTGGGAAGAAATGATAAAAACACGGAAGG
GGGAAAGCAAAGGGGGTGGCCTGACAGGGTACGACGGGGACTCGAACCCC
CGCAATACTCCGTGTACGGGAAATAAGTGAGGGGGAGGGAGGGTAATGGA
GAAAGTACCGGGGTAAGCGAGTCGCTTGTCTGCAATAGAAGGGGGTAGGG
GAGGGGTCGCGTGAGGACGCTAACCAGCACACGGGCCCAGCCTTCCTTTT
TTTATCCCCATCTCACCTTTCTTTCGCGCAATTTTTTGGGGGGCGGCGGA
TCACTTACTCTTCATCACAGAAGGAGCGTGGAGTGCGGGGCAGTCCCCTA
TTGACGGCGGGGGTGCCTTTATTAGAAGAAATCCCGCTGCCCTCCAGATA
CGGCGATTTCGTCCTCCCACTCAAAGCGTAGGTGCCTCCGGCCCGGGGAA
GAGAGGAAAAGGGGGAGGAAAAGGGGAAGGGGGTGGGAGAGAAAATGCGG
ACTGTTTTTTTTGGCGGGGGCGACGTGCCCATCCCTCTCTTGTGCCACTT
TTATCCCCTTCAGGCAAAGCGAAGCACTCCGGAGCTTGAGTATGCATCAC
AGCACCGCGCCCGCGGTCCGCGCGATCATGGGCCGTATCTCCACCAATAC
GGCCACATCGTATTTGATTACAGGTGAGTTTGTCGTGAATTTGGCTGCGT
GCACCTCGGTGGTTGCTCCTTTTTTTTCCAGGGTTATCTATACTATTTTT
CGACTCGTCTTTTCCTGTACGTGGGGCCGTTTCACCCCGAGCCGTCTTTT
TCCCCACGGCCTTGACCCCGTCTCCCTCCCTTCCCCCCCCCTTCCCTCCA
TTTTTTCTCCATTTTTCTCTCCTCCGCCTCCGGCTCAGGTTCCACGGACC
ATCACATCCGTTCCTGGGACTTCGCCTCCCCCGCCGACTGCGTCACTGTC
TCTGGCTTGGTCCCTGGTCAACCGCCCTCGGAATACCTGGCCACCTCCAT
CCCGTGCGCGGACCCTTCCCGGCGGAAATCGTCGGGGAAATTGCTTGTGT
GTAGGGATAGCCCCCTTCCTCCCCTGGTGGTAACCCCTCCAAGCCAGATC
CCTCTGCGAGAGATGCGCGGCCCGGTACCTCCCCCCACCTGTCACACGGG
CGCCATCATGGACTTGAAAACAGTGGATGTCCCCGTGCGCTTGTTGCTGT
CGTGCTCGCGCGACGAAACCGTCAAAGTGTGGCGGTAGAAGATGTGCGGG
AAGCGGAGGGGGAGGGAGAAGGACAAGCGTGGGCACGGAGCAGGGGGGAA
AATTATGGTGGCGGCCAGGAAGGAGGAGAAAGAAGAGGGAAAGGAGAATA
CGCATGTGTGCGCATGGAGCTCACAACGAAAGGAAAGGATCATGTGTACG
TTATGGATGTACATAGCATGTCAGTGAAACAACAAATTATGAAAGAAAGA
CTTTGATCAACTCCTTTGCAAGACCCTGAGTGGAGATGAGCGGCGTTAAT
TGGTAGCTTCATTCTTACCCAAAACAGCCACAAGACACACGAACCTGACA
AACAGGCCCGCGTCTGCATACCCGTACGAGCATGGCATCGAACACCGTTC
CGGCCCCGTACTACTTGGATTGTGTCTGGGTATATTATCTCATGGTATTT
CTGCCTCGCCCGCGTCGCC
back to top

Coding sequence (CDS) from alignment at KK037258.1:121580..123498-

>rna9966 ID=rna9966|Name=rna9966|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at KK037258.1:121580..123498- (Nannochloropsis gaditana)
GTTCCACGGACCATCACATCCGTTCCTGGGACTTCGCCTCCCCCGCCGAC
TGCGTCACTGTCTCTGGCTTGGTCCCTGGTCAACCGCCCTCGGAATACCT
GGCCACCTCCATCCCGTGCGCGGACCCTTCCCGGCGGAAATCGTCGGGGA
AATTGCTTGTGTGTAGGGATAGCCCCCTTCCTCCCCTGGTGGTAACCCCT
CCAAGCCAGATCCCTCTGCGAGAGATGCGCGGCCCGGTACCTCCCCCCAC
CTGTCACACGGGCGCCATCATGGACTTGAAAACAGTGGATGTCCCCGTGC
GCTTGTTGCTGTCGTGCTCGCGCGACGAAACCGTCAAAGTGTGGCGGTAG
ATGCATCACAGCACCGCGCCCGCGGTCCGCGCGATCATGGGCCGTATCTC
CACCAATACGGCCACATCGTATTTGATTACAGGTTCCACGGACCATCACA
TCCGTTCCTGGGACTTCGCCTCCCCCGCCGACTGCGTCACTGTCTCTGGC
TTGGTCCCTGGTCAACCGCCCTCGGAATACCTGGCCACCTCCATCCCGTG
CGCGGACCCTTCCCGGCGGAAATCGTCGGGGAAATTGCTTGTGTGTAGGG
ATAGCCCCCTTCCTCCCCTGGTGGTAACCCCTCCAAGCCAGATCCCTCTG
CGAGAGATGCGCGGCCCGGTACCTCCCCCCACCTGTCACACGGGCGCCAT
CATGGACTTGAAAACAGTGGATGTCCCCGTGCGCTTGTTGCTGTCGTGCT
CGCGCGACGAAACCGTCAAAGTGTGGCGGTAGATGCATCACAGCACCGCG
CCCGCGGTCCGCGCGATCATGGGCCGTATCTCCACCAATACGGCCACATC
GTATTTGATTACAG
back to top
Synonyms
Publications