EWM20739.1, cds9935 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|585100599|gb|EWM20739.1| (hypothetical protein Naga_101106g2 [Nannochloropsis gaditana]) HSP 1 Score: 286.574 bits (732), Expect = 6.230e-98 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 Query: 1 MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143 MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR Sbjct: 1 MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|299117051|emb|CBN73822.1| (conserved protein [Ectocarpus siliculosus]) HSP 1 Score: 85.5001 bits (210), Expect = 1.319e-16 Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 0 Query: 7 PAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGL--VPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQI---PLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143 PA+RA++GRIS + SYLITG TD IR WDF + + C VSG PG+P L +P P + S +L + P PP + S+ + +G V P + H A++D+K ++P ++LLS SRD VK+W+ Sbjct: 1323 PAIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYMVSGREPFPGRPSPRTL--QVPGPAPGGK--STVVLYFDEDPPPPTPASLASRTGSPAVTLEKGLVAPRSSHDDAVLDVKVTELPTKMLLSGSRDGAVKIWK 1460
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|223998776|ref|XP_002289061.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976169|gb|EED94497.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 85.1149 bits (209), Expect = 1.524e-16 Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 0 Query: 1 MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVW 142 M + P++ A+ G S N SY++TG +DH IR WD SP VSGL QP P D +L +C+ PP + +++ L+ RG V H +I+DLK V+ P +LS SRD T+K+W Sbjct: 1573 MTRGSTPSINALFG--SFNRGQSYVMTGGSDHMIRYWDLNSPTRSFCVSGLSRNQPQ--------PTFDQMNVGGISRLYICQQPSPPPTSLLESNKLSLQSRRGVVRCDNNHRDSILDLKIVNYPTMGVLSSSRDGTIKLW 1704
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|1072230506|gb|OEU15239.1| (WD40 repeat-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 84.3445 bits (207), Expect = 2.849e-16 Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 0 Query: 4 STAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143 S+ +V ++G + N+ S+LITG D IR WDF+ P+ C +GL Q S P + ++ +L++CR +P P L T S+ P + +G P CH +I DLK + LLSCSRD TVK+WR Sbjct: 1464 SSFQSVNCMVGS-TGNSDQSFLITGGCDRRIRYWDFSMPSKCHVTNGLDAVQ--------SRPSFERIDYNNNSRLMLCRQAPAPTLSETGSSKTPRKLFQGTRTLPQCHNDSICDLKFLKNS---LLSCSRDCTVKLWR 1591
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|219127594|ref|XP_002184017.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404740|gb|EEC44686.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 77.7962 bits (190), Expect = 5.142e-14 Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 0 Query: 4 STAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143 S+ ++ ++G I + S+L+TG +D IR WDF+ P+ C T++G GQ + + + G+L+ CRD+ P PS + + +G P HT +I DLK +D L+SCSRD T+K+WR Sbjct: 1467 SSKGSIHCMVGSIGA-SHQSFLVTGGSDCRIRFWDFSDPSKCFTLAGQEQGQNRPYFERIDLG-------EGKGRLIACRDAESGP----APSHMSRKLHQGVKRPDHHHTDSIQDLKIIDGCS--LISCSRDSTIKMWR 1592
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|397603733|gb|EJK58504.1| (hypothetical protein THAOC_21362, partial [Thalassiosira oceanica]) HSP 1 Score: 75.8702 bits (185), Expect = 2.141e-13 Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 0 Query: 5 TAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVW 142 T +V A++G I+ +S+L+TGS D +R W+ S + VSGL QPP P + + + +L++CR PP + S++P +G V HT +I+DLK P ++LS SRD TVK+W Sbjct: 297 TGYSVNAVVGNINAQ-GSSFLLTGS-DSQVRCWNLNSTSKSCCVSGLSLNQPP--------PSFEQVKVGGNSRLILCRQPSAPPSNLVEGSKLPQYRRQGVVGCDKGHTDSILDLKIAKAPA-VVLSASRDNTVKLW 423
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|813142941|ref|XP_012199459.1| (hypothetical protein SPRG_04931 [Saprolegnia parasitica CBS 223.65] >gi|641535948|gb|KDO29848.1| hypothetical protein SPRG_04931 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 60.4622 bits (145), Expect = 6.339e-8 Identity = 42/126 (33.33%), Postives = 57/126 (45.24%), Query Frame = 0 Query: 25 LITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKL-----LVCRD--SPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143 L+T D IR WD +P +TV G G S Y + P + K+ +C+D S + P E RGP+PP H I+DLK VDV +++S +RD VKVWR Sbjct: 1198 LLTAGEDRRIRFWDLRNPKKSLTVCG---GDASSFYDSQDAPSGWWKLKGDESKMDPPTIHLCQDASSYFGDSTADGVAPNPALERRGPIPPSPAHNDCILDLKLVDVNGPMVVSSARDGVVKVWR 1320
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|1173957550|gb|OQS04052.1| (phosphoinositide 3-kinase regulatory subunit [Thraustotheca clavata]) HSP 1 Score: 60.4622 bits (145), Expect = 7.221e-8 Identity = 50/161 (31.06%), Postives = 71/161 (44.10%), Query Frame = 0 Query: 1 MHHSTAPAVRAIMGRISTNTATSY-LITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCA----DPSRRKSSGKLL----------VCRDSPL---PPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143 M + P VRAI+ + Y L+T D IR WD +P +TV G G S Y + P + + +L+ +C+DS +V + P E RGP+PP H I+DLK VDV +++S +RD VKVWR Sbjct: 1546 MTFTEEPTVRAIV------CPSEYSLLTAGEDRRIRFWDLRNPKKSLTVCG---GDASSFYDSVDAPQGWWKLKNEEKVTKAELVWSKMDPPTIHLCQDSSSYFGDGVVNADGAANPATERRGPIPPSPAHNDCILDLKLVDVNGPMIVSSARDGVVKVWR 1697 The following BLAST results are available for this feature:
BLAST of EWM20739.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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