EWM20739.1, cds9935 (CDS) Nannochloropsis gaditana

Overview
NameEWM20739.1
Unique Namecds9935
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:122576..122657 -
Alignment locationKK037258.1:122011..122360 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20739.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101106g2.8456.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:122576..122657 -
KK037258.1supercontigKK037258.1:122011..122360 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
Homology
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|585100599|gb|EWM20739.1| (hypothetical protein Naga_101106g2 [Nannochloropsis gaditana])

HSP 1 Score: 286.574 bits (732), Expect = 6.230e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143
            MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR
Sbjct:    1 MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143          
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|299117051|emb|CBN73822.1| (conserved protein [Ectocarpus siliculosus])

HSP 1 Score: 85.5001 bits (210), Expect = 1.319e-16
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 0
Query:    7 PAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGL--VPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQI---PLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143
            PA+RA++GRIS +   SYLITG TD  IR WDF + + C  VSG    PG+P    L   +P   P  +  S  +L   + P PP   +  S+     +   +G V P + H  A++D+K  ++P ++LLS SRD  VK+W+
Sbjct: 1323 PAIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYMVSGREPFPGRPSPRTL--QVPGPAPGGK--STVVLYFDEDPPPPTPASLASRTGSPAVTLEKGLVAPRSSHDDAVLDVKVTELPTKMLLSGSRDGAVKIWK 1460          
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|223998776|ref|XP_002289061.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976169|gb|EED94497.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.1149 bits (209), Expect = 1.524e-16
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 0
Query:    1 MHHSTAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVW 142
            M   + P++ A+ G  S N   SY++TG +DH IR WD  SP     VSGL   QP         P  D        +L +C+    PP  +   +++ L+  RG V     H  +I+DLK V+ P   +LS SRD T+K+W
Sbjct: 1573 MTRGSTPSINALFG--SFNRGQSYVMTGGSDHMIRYWDLNSPTRSFCVSGLSRNQPQ--------PTFDQMNVGGISRLYICQQPSPPPTSLLESNKLSLQSRRGVVRCDNNHRDSILDLKIVNYPTMGVLSSSRDGTIKLW 1704          
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|1072230506|gb|OEU15239.1| (WD40 repeat-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 84.3445 bits (207), Expect = 2.849e-16
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 0
Query:    4 STAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143
            S+  +V  ++G  + N+  S+LITG  D  IR WDF+ P+ C   +GL   Q        S P  +     ++ +L++CR +P P L  T  S+ P +  +G    P CH  +I DLK +      LLSCSRD TVK+WR
Sbjct: 1464 SSFQSVNCMVGS-TGNSDQSFLITGGCDRRIRYWDFSMPSKCHVTNGLDAVQ--------SRPSFERIDYNNNSRLMLCRQAPAPTLSETGSSKTPRKLFQGTRTLPQCHNDSICDLKFLKNS---LLSCSRDCTVKLWR 1591          
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|219127594|ref|XP_002184017.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404740|gb|EEC44686.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.7962 bits (190), Expect = 5.142e-14
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 0
Query:    4 STAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143
            S+  ++  ++G I   +  S+L+TG +D  IR WDF+ P+ C T++G   GQ    +    +        +  G+L+ CRD+   P     PS +  +  +G   P   HT +I DLK +D     L+SCSRD T+K+WR
Sbjct: 1467 SSKGSIHCMVGSIGA-SHQSFLVTGGSDCRIRFWDFSDPSKCFTLAGQEQGQNRPYFERIDLG-------EGKGRLIACRDAESGP----APSHMSRKLHQGVKRPDHHHTDSIQDLKIIDGCS--LISCSRDSTIKMWR 1592          
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|397603733|gb|EJK58504.1| (hypothetical protein THAOC_21362, partial [Thalassiosira oceanica])

HSP 1 Score: 75.8702 bits (185), Expect = 2.141e-13
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 0
Query:    5 TAPAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKLLVCRDSPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVW 142
            T  +V A++G I+    +S+L+TGS D  +R W+  S +    VSGL   QPP        P  +  +   + +L++CR    PP  +   S++P    +G V     HT +I+DLK    P  ++LS SRD TVK+W
Sbjct:  297 TGYSVNAVVGNINAQ-GSSFLLTGS-DSQVRCWNLNSTSKSCCVSGLSLNQPP--------PSFEQVKVGGNSRLILCRQPSAPPSNLVEGSKLPQYRRQGVVGCDKGHTDSILDLKIAKAPA-VVLSASRDNTVKLW 423          
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|813142941|ref|XP_012199459.1| (hypothetical protein SPRG_04931 [Saprolegnia parasitica CBS 223.65] >gi|641535948|gb|KDO29848.1| hypothetical protein SPRG_04931 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 60.4622 bits (145), Expect = 6.339e-8
Identity = 42/126 (33.33%), Postives = 57/126 (45.24%), Query Frame = 0
Query:   25 LITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCADPSRRKSSGKL-----LVCRD--SPLPPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143
            L+T   D  IR WD  +P   +TV G   G   S Y +   P      +    K+      +C+D  S          +  P  E RGP+PP   H   I+DLK VDV   +++S +RD  VKVWR
Sbjct: 1198 LLTAGEDRRIRFWDLRNPKKSLTVCG---GDASSFYDSQDAPSGWWKLKGDESKMDPPTIHLCQDASSYFGDSTADGVAPNPALERRGPIPPSPAHNDCILDLKLVDVNGPMVVSSARDGVVKVWR 1320          
BLAST of EWM20739.1 vs. NCBI_GenBank
Match: gi|1173957550|gb|OQS04052.1| (phosphoinositide 3-kinase regulatory subunit [Thraustotheca clavata])

HSP 1 Score: 60.4622 bits (145), Expect = 7.221e-8
Identity = 50/161 (31.06%), Postives = 71/161 (44.10%), Query Frame = 0
Query:    1 MHHSTAPAVRAIMGRISTNTATSY-LITGSTDHHIRSWDFASPADCVTVSGLVPGQPPSEYLATSIPCA----DPSRRKSSGKLL----------VCRDSPL---PPLVVTPPSQIPLREMRGPVPPPTCHTGAIMDLKTVDVPVRLLLSCSRDETVKVWR 143
            M  +  P VRAI+        + Y L+T   D  IR WD  +P   +TV G   G   S Y +   P          + +  +L+          +C+DS       +V    +  P  E RGP+PP   H   I+DLK VDV   +++S +RD  VKVWR
Sbjct: 1546 MTFTEEPTVRAIV------CPSEYSLLTAGEDRRIRFWDLRNPKKSLTVCG---GDASSFYDSVDAPQGWWKLKNEEKVTKAELVWSKMDPPTIHLCQDSSSYFGDGVVNADGAANPATERRGPIPPSPAHNDCILDLKLVDVNGPMIVSSARDGVVKVWR 1697          
The following BLAST results are available for this feature:
BLAST of EWM20739.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585100599|gb|EWM20739.1|6.230e-98100.00hypothetical protein Naga_101106g2 [Nannochloropsi... [more]
gi|299117051|emb|CBN73822.1|1.319e-1638.03conserved protein [Ectocarpus siliculosus][more]
gi|223998776|ref|XP_002289061.1|1.524e-1634.51predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072230506|gb|OEU15239.1|2.849e-1636.43WD40 repeat-like protein [Fragilariopsis cylindrus... [more]
gi|219127594|ref|XP_002184017.1|5.142e-1432.86predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397603733|gb|EJK58504.1|2.141e-1334.06hypothetical protein THAOC_21362, partial [Thalass... [more]
gi|813142941|ref|XP_012199459.1|6.339e-833.33hypothetical protein SPRG_04931 [Saprolegnia paras... [more]
gi|1173957550|gb|OQS04052.1|7.221e-831.06phosphoinositide 3-kinase regulatory subunit [Thra... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9966rna9966Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications