rna9956, rna9956 (mRNA) Nannochloropsis gaditana

Overview
Namerna9956
Unique Namerna9956
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length249
Alignment locationKK037258.1:96681..97141 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103321g1.10546.mrna
Orig protein idgnl|cribi|Naga_103321g1.10546
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:96681..97141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103321g1gene9658Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9956rna9956-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20748.1cds9925Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9956 ID=rna9956|Name=rna9956|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGTTTGTTCGATCTCTGCTCTTGTTGCCAAGGACAGCAACTACCGAGGA
AGGTGATCGACTCTCCGTCTTATCCTGTGTTGGAATTTCTTTGATGCTGT
CAAGCCTCGGGAAAGCTCCTTCTATTTCGCTTTTTGTGACCGTCGCGCGT
GTGGTTGCTCTGTGCATTTTCACCGCCTCGTGCAACGGTTTTTGGGTCGG
GCGTTTTCCTCCCACTGCACCTCTCTCTCGTCGTTCGTTCTTTCGGTGA
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protein sequence of rna9956

>rna9956-protein ID=rna9956-protein|Name=rna9956|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MDADTSVYEAENTVVYQRLPDRGRQGHSQRRLPQDYLGRSAGAARRPIEC
VSKHPSCTFLRCAEGRQQHQFRPSVDLPPAFWGGTVGAW
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mRNA from alignment at KK037258.1:96681..97141+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9956 ID=rna9956|Name=rna9956|organism=Nannochloropsis gaditana|type=mRNA|length=461bp|location=Sequence derived from alignment at KK037258.1:96681..97141+ (Nannochloropsis gaditana)
atggatgcAGACACCTCAGTCTACGAAGCGGAAAACACCGTGGTGTACCA
ACGCGTGGCCGAATTTCGCCGGCGATACCGCAGGTAGATTCTCGCCCCTC
TTTTTTGCCTTAGCGttgggccctccctcccctccttgtcacgTCCCGCG
CATCCGgacgccctcttccttcctcctcccgccctcctcccctccctcgc
aacCATTGACGGGGTGTACCCCATTCGATACGTCCACACACACAGCTACC
GGATCGGGGCCGCCAAGGGCATTCGCAGCGACGCCTCCCACAAGATTACC
TTGGAAGAAGCGCGGGTGCTGCCCGTCGCCCAATTGAGTGCGTTTCTAAG
CACCCAAGTTGCACCTTCCTTAGGTGTGCGGAGGGTCGTCAGCAGCATCA
ATTTCGCCCATCGGTCGACCTTCCACCTGCATTTTGGGGCGGGACGGTTG
GGGCTTGGTAA
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Coding sequence (CDS) from alignment at KK037258.1:96681..97141+

>rna9956 ID=rna9956|Name=rna9956|organism=Nannochloropsis gaditana|type=CDS|length=540bp|location=Sequence derived from alignment at KK037258.1:96681..97141+ (Nannochloropsis gaditana)
atggatgcAGACACCTCAGTCTACGAAGCGGAAAACACCGTGGTGTACCA
ACGCCTACCGGATCGGGGCCGCCAAGGGCATTCGCAGCGACGCCTCCCAC
AAGATTACCTTGGAAGAAGCGCGGGTGCTGCCCGTCGCCCAATTGAGTGC
GTTTCTAAGCACCCAAGTTGCACCTTCCTTAGGTGTGCGGAGGGTCGTCA
GCAGCATCAATTTCGCCCATCGGTCGACCTTCCACCTGCATTTTGGGGCG
GGACGGTTGGGGCTTGGTAAatggatgcAGACACCTCAGTCTACGAAGCG
GAAAACACCGTGGTGTACCAACGCCTACCGGATCGGGGCCGCCAAGGGCA
TTCGCAGCGACGCCTCCCACAAGATTACCTTGGAAGAAGCGCGGGTGCTG
CCCGTCGCCCAATTGAGTGCGTTTCTAAGCACCCAAGTTGCACCTTCCTT
AGGTGTGCGGAGGGTCGTCAGCAGCATCAATTTCGCCCATCGGTCGACCT
TCCACCTGCATTTTGGGGCGGGACGGTTGGGGCTTGGTAA
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Synonyms
Publications