rna995, rna995 (mRNA) Nannochloropsis gaditana

Overview
Namerna995
Unique Namerna995
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length285
Alignment locationCM002456.1:922184..922757 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100299g4.1143.mrna
Orig protein idgnl|cribi|Naga_100299g4.1143
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:922184..922757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100299g4gene958Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna995rna995-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29681.1cds994Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna995 ID=rna995|Name=rna995|organism=Nannochloropsis gaditana|type=mRNA|length=285bp
ATGGCTCGACACGATGATTTTTGCAGGAGAGGCGCAGAGGCGTCAGGCAG
CACCAGAATGTGCGGTTTGGGAAGAAACATAAACTATTTTCGGGGGAAAA
GGGCTGAACAAGCGCTTCCGAAGCTACGTTTACCCACCGCCTTGCTAATA
AATGCTGCTGACGCCGCCAACACATTTTGCGGTGGCCGTACTGCTTGTAA
CAAGAAGGCGGGTGTCCAACATCTTTTTCCGATTTTGTCGATACTCCTGT
GTACCCTGCCGCACGCAACAGCACTCTTGACCTAA
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protein sequence of rna995

>rna995-protein ID=rna995-protein|Name=rna995|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MKVRRGAKKIRLQGKRQNHSKFSKPKTGMHSVVQTVWEGKDSVRKNLQKL
GVSDDPNRTTAFCASPTGSSGIDPQDVFSLPPAERRDRNPRRRPMSAEDQ
AYIVKLLMVHGNDYKRCVCVSKYRVFLFFALVLVRLIVAVGPSDRASLLA
ESCCCNLIFTALKFVKLHG
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mRNA from alignment at CM002456.1:922184..922757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna995 ID=rna995|Name=rna995|organism=Nannochloropsis gaditana|type=mRNA|length=574bp|location=Sequence derived from alignment at CM002456.1:922184..922757+ (Nannochloropsis gaditana)
ATGAAAGTCCGGAGAGGAGCCAAGAAGATCCGTCTGCAAGGGAAAAGACA
AAATCACAGCAAATTTTCGAAGCCTAAGACTGGGATGCACTCAGTTGTGC
AAACAGTGTGGGAAGGTAAGGATTCCGTGCGGAAAAATCTCCAGAAACTG
GGCGTCTCGGACGACCCCAATCGCACAACAGCGTTTTGTGCATCTCCCAC
CGGAAGTTCCGGCATAGACCCTCAAGATGTTTTCAGCCTGCCCCCAGCTG
AGCGTCGAGATCGAAATCCGCGACGACGTCCAATGAGTGCAGAGGATCAG
GCGTACATTGTGAAACTCCTGATGGTTCATGGAAATGATTACAAGGTACG
TGAAAGGATGAAGTATCTTAACCCTCCTGCTGTCATGATGTAGGACATCA
ATGTGATAGAGATGTGTATGTGTGTCAAAATACCGCGTCTTTTTGTTCTT
TGCCCTGGTGCTGGTCCGCCTTATAGTCGCCGTCGGTCCCTCAGACCGTG
CTTCACTACTAGCTGAGTCCTGTTGTTGTAACCTGATCTTCACGGCACTC
AAATTTGTGAAGCTACATGGATGA
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Coding sequence (CDS) from alignment at CM002456.1:922184..922757+

>rna995 ID=rna995|Name=rna995|organism=Nannochloropsis gaditana|type=CDS|length=1020bp|location=Sequence derived from alignment at CM002456.1:922184..922757+ (Nannochloropsis gaditana)
ATGAAAGTCCGGAGAGGAGCCAAGAAGATCCGTCTGCAAGGGAAAAGACA
AAATCACAGCAAATTTTCGAAGCCTAAGACTGGGATGCACTCAGTTGTGC
AAACAGTGTGGGAAGGTAAGGATTCCGTGCGGAAAAATCTCCAGAAACTG
GGCGTCTCGGACGACCCCAATCGCACAACAGCGTTTTGTGCATCTCCCAC
CGGAAGTTCCGGCATAGACCCTCAAGATGTTTTCAGCCTGCCCCCAGCTG
AGCGTCGAGATCGAAATCCGCGACGACGTCCAATGAGTGCAGAGGATCAG
GCGTACATTGTGAAACTCCTGATGGTTCATGGAAATGATTACAAGAGATG
TGTATGTGTGTCAAAATACCGCGTCTTTTTGTTCTTTGCCCTGGTGCTGG
TCCGCCTTATAGTCGCCGTCGGTCCCTCAGACCGTGCTTCACTACTAGCT
GAGTCCTGTTGTTGTAACCTGATCTTCACGGCACTCAAATTTGTGAAGCT
ACATGGATGAATGAAAGTCCGGAGAGGAGCCAAGAAGATCCGTCTGCAAG
GGAAAAGACAAAATCACAGCAAATTTTCGAAGCCTAAGACTGGGATGCAC
TCAGTTGTGCAAACAGTGTGGGAAGGTAAGGATTCCGTGCGGAAAAATCT
CCAGAAACTGGGCGTCTCGGACGACCCCAATCGCACAACAGCGTTTTGTG
CATCTCCCACCGGAAGTTCCGGCATAGACCCTCAAGATGTTTTCAGCCTG
CCCCCAGCTGAGCGTCGAGATCGAAATCCGCGACGACGTCCAATGAGTGC
AGAGGATCAGGCGTACATTGTGAAACTCCTGATGGTTCATGGAAATGATT
ACAAGAGATGTGTATGTGTGTCAAAATACCGCGTCTTTTTGTTCTTTGCC
CTGGTGCTGGTCCGCCTTATAGTCGCCGTCGGTCCCTCAGACCGTGCTTC
ACTACTAGCTGAGTCCTGTTGTTGTAACCTGATCTTCACGGCACTCAAAT
TTGTGAAGCTACATGGATGA
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Synonyms
Publications