|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100518g1.7416.mrna |
| Orig protein id | gnl|cribi|Naga_100518g1.7416 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037258.1 | supercontig | KK037258.1:63458..64914 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9946 ID=rna9946|Name=rna9946|organism=Nannochloropsis gaditana|type=mRNA|length=1729bp
ATACGTCACTGCGAAGGGCAAGTGAGAAAAATTGCGCGAAACAGAAGAAC
GGCCCAAGCCTTGGGCGGCCAAAGGGGGGAGAAATTGCGCGAAACCGTGA
GAAAAGGAAACCTCAGGACAAAGACATAGCGACGAGCGCAACACGCAATA
TGTGAACAATTTTTGGGGAGAAACGCCGGCCGAATGTGTTCATGAATACA
ATCCATGAGTATAAGTCAGTAGAAATCTCTGTGGCAAAACACCCCATTCT
TTGATGCATGGACGAACTGGATCTCATCAATCCCTGAAAACTAATCTCGA
CCCCTTTTATTCCTGGAGTAGCCACAAGGATGGACCACGTACTGCGAACA
GTGGGATGGTTCGTACGTACACCCGAAGTACCGAAAGACGGCGCTAAACT
CTGCACGATTGCTCTCTCCCATTACTGTGAGAAAGCTCGTTGGGCCTTGG
ACTTGTCGCCCCTACGCGACACGTACATCGAAGACGCCCATGCCCCTGTC
TTCCATTATCGACCAACGGTCGCCTTAACCAAGGACCGGAAGAAAACAGG
CTTGCCTGTCCTGGTGCTTCCCGGAGTGGACCCTGAGGGCCCGCCTACTG
TTGTTCAGGACTCTGCTGAGATCCTCCAGCACCTTGCCTCCCTGTATCCG
AAGGAGCTGGGGCACATGTACCCTCCTGGAGATATGGGGGACAAGGTACG
GGCGTTGGAGAGGAAGCTGGGAGAGCAGCTGGGGCCTGCGACGCGTAAAA
TCGTGTATTGGGAAATGTGGCAAGGACGACAGGAGGGAATTGATACCTGC
AACGCACTGTTGGAAAGGCATTATCCCACGGCCGAGGCGCGAATGTGGCG
GCTATTGGAAGCCAAGATCCTCCCAGTCATGCTTAAAGCGATGAAAATCG
ATGAAACCTCGACTCTCGCGGCGTTGGAAGAGTCTCGTGAGATTTTCCGG
GAAGTTTCGGCATTACTGGACAGCGAGGAAGGAGGGAAGGGCGGGGGAGC
TCCCGCAGGCCCGCGAAGATACCTGTTGGGGGCAAATCGGATGACAGCAG
CGGATTTGACGTTTGCTGCTTTGGCGTACCCACTGATAAATCCTCCCGCC
TTCGCCTCCTTAGGTTTGTCGGGAGCAGAGGCCTCCCCCTGGGCCAAAAG
GTTAGCCGTCATCACAAAAGAATTTCGGGCTACCCCAGCAGGTCAACATG
TCTTGAGGTTGTATGGGGAGGAACGGTTTCCAGAAACCTCTATGGCGGGA
AAAGAGCCGACGGGTCAGCTTTGCCTTCGGACGTCAAACCGAGACAAGTG
GCCCTGGCAGTGAAACAGGGGCACTTACCGGGGTGTTGGGATCATTCGAG
CATAGATCCCGAGTTAAAGACTTTTCGGCGTGTAAGTCTTCTTGAGCATG
TATAAATCTCTTTGTTTTTGAGAGATGATTATATACACCGATCGATCTTT
CAGCTAGAAAACAGATGATTGTCAACACTAGTCTACGAGCTTTGAAGCAA
GAAAGCAATTTGTGACTCTTGAAGGGCATTTACGACTTAATTTGATACAT
TAATTTTGGTGTATTGGGTACGAAAACTGTGCATGCGTGACCTCCGCGAG
GGACTAAAAAGCAATCGACTTCCTGAAGAACTCACTCCCAAAGACGTGAA
GAACGCTTGAAGCCTTCTGCATTGTCAAGAAAGCTACTTCCTTTGTAGAG
AACGACTTGTTTTAAGGTTTGTAATTATC back to topprotein sequence of rna9946 >rna9946-protein ID=rna9946-protein|Name=rna9946|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MQSVEDLERMEEEFNLQQQQQPLVSCSVEEGKMKKGNDAIERGGTGSGTH
EGGGGRAHEEEETGNKKRGEDTEMSSTGFSVPDTVATMPTGETEQESSPP
RGLGSRGNEDGPQAQEEDRHKGESRTKGGRGEGEGKGMRGEDRRRGREDK
ETTRRVPAEVAPATPRRSGGGSA back to topmRNA from alignment at KK037258.1:63458..64914+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9946 ID=rna9946|Name=rna9946|organism=Nannochloropsis gaditana|type=mRNA|length=1457bp|location=Sequence derived from alignment at KK037258.1:63458..64914+ (Nannochloropsis gaditana)
AAGTCTCATGGTAGTCATCCGCAAGGAAAATACTACAGTGCTGATATGCA
TTTTTCATATTCCTGGTTGCACCTATCAGAGAGATGTATTGTATCTGTAC
ACACACCAGATAGGCATGGTGGGTGCTCTAACCATCATTTTTGGACCTCC
GCATCCTTGTTCATTCTTCTCTTTTGccttttgccccccctcATTGCCCC
TCGCACGTTGCCCTGCCTGTACGCATGCAGTCGGTGGAGGACCTCGAGCG
AATGGAAGAAGAATTCAAtctgcagcaacagcaacaacccTTGGTGTCCT
GCTCtgtagaggaaggaaagatgaaAAAGGGCAACGATGCCatagagaga
ggagggacagggagcggaacccatgagggaggagggggaagagcgcacga
ggaggaggaaacaggcaacaaaaagaggggagaagacacGGAGATGTCCT
CCACTGGATTTTCTGTACCCGATACCGTGGCGACGATGCCCACAGGGGAA
ACAGAGCAGGTACCTCTATCcttgcttcttttcttccgttCCTTCCTGga
tgcttttcttcctctttccctccctcctgtccttcctccttcccttcctc
cttccctccctcctgcactCCCTTCTaagctgccgccgctgctcctcttt
cctATCCCGATCcattcctgtcctccttccctccctccctccaggaaagc
tcccccccccgggggctGGGGTCCCGAGGAAACGAGGACGGCCCTCAGGc
tcaggaagaggacagacacaagggagaaagccggacaaagggtgggaggg
gggagggggaggggaaagggatgcgCGGGGAGGATcggcgacggggaagg
gaggacaaggagacgacgaggagggtccCAGCGGAGGTAGCACCGGCGAC
CCCCcgaagaagcgggggaggaagcgcctaAAGCCTCATCCTGACGTCCT
GGCTCCCGTCGTGaccgtggcgggggggaaggacctcTACGCGCTTCGCC
CGCCCGGGAACATCCTCCGGCAGATGGTCccgtgcccgtcctccctccct
ccctccctccctccctccctccctcttttcctctcttgcGCGCTCTATCC
CCCATCTTGGCTGGCGTCCCTTTCATGGTCGTTACTGGGCTCTTTGCCTA
GGATTTCAAGGGTATTTTAAAGTACATTACACTGTACGAAtcatcctccc
gccctccccctctctccccccctccctcgatcccttcctccctccctcgg
tctctccctccctccctccttcccttttacCCTTAGACACGCCACAAAAC
GGGTCACCTCTTTCGCTCGCTCCTTCTGTCCCTCTCTTACTACCCGGACT
GCAcctctcgccttcctgccctccctccctcccttcctccccccctcgag
ccctacctcctcttcacaCCGGCGGATTtgtaccccttcctccgtcatgt
cctcccc back to topCoding sequence (CDS) from alignment at KK037258.1:63458..64914+ >rna9946 ID=rna9946|Name=rna9946|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at KK037258.1:63458..64914+ (Nannochloropsis gaditana)
ATGCAGTCGGTGGAGGACCTCGAGCGAATGGAAGAAGAATTCAAtctgca
gcaacagcaacaacccTTGGTGTCCTGCTCtgtagaggaaggaaagatga
aAAAGGGCAACGATGCCatagagagaggagggacagggagcggaacccat
gagggaggagggggaagagcgcacgaggaggaggaaacaggcaacaaaaa
gaggggagaagacacGGAGATGTCCTCCACTGGATTTTCTGTACCCGATA
CCGTGGCGACGATGCCCACAGGGGAAACAGAGCAGgaaagctcccccccc
cgggggctGGGGTCCCGAGGAAACGAGGACGGCCCTCAGGctcaggaaga
ggacagacacaagggagaaagccggacaaagggtgggaggggggaggggg
aggggaaagggatgcgCGGGGAGGATcggcgacggggaagggaggacaag
gagacgacgaggagggtccCAGCGGAGGTAGCACCGGCGACCCCCcgaag
aagcgggggaggaagcgcctaAATGCAGTCGGTGGAGGACCTCGAGCGAA
TGGAAGAAGAATTCAAtctgcagcaacagcaacaacccTTGGTGTCCTGC
TCtgtagaggaaggaaagatgaaAAAGGGCAACGATGCCatagagagagg
agggacagggagcggaacccatgagggaggagggggaagagcgcacgagg
aggaggaaacaggcaacaaaaagaggggagaagacacGGAGATGTCCTCC
ACTGGATTTTCTGTACCCGATACCGTGGCGACGATGCCCACAGGGGAAAC
AGAGCAGgaaagctcccccccccgggggctGGGGTCCCGAGGAAACGAGG
ACGGCCCTCAGGctcaggaagaggacagacacaagggagaaagccggaca
aagggtgggaggggggagggggaggggaaagggatgcgCGGGGAGGATcg
gcgacggggaagggaggacaaggagacgacgaggagggtccCAGCGGAGG
TAGCACCGGCGACCCCCcgaagaagcgggggaggaagcgcctaA back to top
|