EWM20759.1, cds9915 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20759.1
Unique Name	cds9915
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037258.1:63682..63966 +
Alignment location	KK037258.1:64152..64388 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20759.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100518g1.7416.mrna
Gbkey	CDS
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037258.1	supercontig	KK037258.1:63682..63966 +
KK037258.1	supercontig	KK037258.1:64152..64388 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM20759.1 vs. NCBI_GenBank
Match: gi|585100631|gb|EWM20758.1| (hypothetical protein Naga_100518g1 [Nannochloropsis gaditana] >gi|585100632|gb|EWM20759.1| hypothetical protein Naga_100518g1 [Nannochloropsis gaditana])

HSP 1 Score: 335.495 bits (859), Expect = 3.133e-116
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0

Query:    1 MQSVEDLERMEEEFNLQQQQQPLVSCSVEEGKMKKGNDAIERGGTGSGTHEGGGGRAHEEEETGNKKRGEDTEMSSTGFSVPDTVATMPTGETEQESSPPRGLGSRGNEDGPQAQEEDRHKGESRTKGGRGEGEGKGMRGEDRRRGREDKETTRRVPAEVAPATPRRSGGGSA 173
            MQSVEDLERMEEEFNLQQQQQPLVSCSVEEGKMKKGNDAIERGGTGSGTHEGGGGRAHEEEETGNKKRGEDTEMSSTGFSVPDTVATMPTGETEQESSPPRGLGSRGNEDGPQAQEEDRHKGESRTKGGRGEGEGKGMRGEDRRRGREDKETTRRVPAEVAPATPRRSGGGSA
Sbjct:    1 MQSVEDLERMEEEFNLQQQQQPLVSCSVEEGKMKKGNDAIERGGTGSGTHEGGGGRAHEEEETGNKKRGEDTEMSSTGFSVPDTVATMPTGETEQESSPPRGLGSRGNEDGPQAQEEDRHKGESRTKGGRGEGEGKGMRGEDRRRGREDKETTRRVPAEVAPATPRRSGGGSA 173

The following BLAST results are available for this feature:

BLAST of EWM20759.1 vs. NCBI_GenBank

BLAST of EWM20759.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100631\|gb\|EWM20758.1\|	3.133e-116	100.00	hypothetical protein Naga_100518g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9946	rna9946	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications