rna9944, rna9944 (mRNA) Nannochloropsis gaditana

Overview
Namerna9944
Unique Namerna9944
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2540
Alignment locationKK037258.1:53691..54188 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100405g1.2127.mrna
Orig protein idgnl|cribi|Naga_100405g1.2127
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:53691..54188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100405g1gene9646Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9944rna9944-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20760.1cds9913Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9944 ID=rna9944|Name=rna9944|organism=Nannochloropsis gaditana|type=mRNA|length=2540bp
ATGCACGGATGCTTCACACGCTGGGGCGCCTTTTTGGTCATGGGAATGGT
GGGAATGCGAGTTGCAAAGGCCTTCCTCTCCCCCTTCTGTCCGCATGCCA
CCGCCGAGTGCCCATCCAACGCCGCTTTCACCACATCGAGCTCCTGCACC
GGGCACGCGATGCGCCCTCCCCCACCTCTCTTCCACCTACCAGGGTTTTC
CAGTGCACGCCACGCCCATTCTTCTACCGCTCGAGCAGCTTCTGTAGAAG
GGACTGAGGCCTCAAGGGGTGTGGAGGAGGTAGTCTTCCATCCCGCAGAT
GAATATTTTCAGCAGGTCCCTCATCACTACGATCACGTGGAAGACTACTT
GGTCCACTACGAGAAGTCCATCAAGGACCCGGAAGCATTCTGGTCAGAAA
TTGCGCGAAATTTTCATTGGGAGACCCCGTGGGAGGAAACACTCTCCTAT
AACTTCAATCGGTCTGCGGGACCGATCCATGTCCGTTTCTTCCACGGGGG
AGAGACCAACATCGCTTACAACGCGCTGGACAGGCACGTCGCTGCCGGCC
TGGGAGACCGCATCGCCTTCTACACAGAAAGGAACGACCTGGAGCCAATA
AGGGAATCTGGCCCGGGGGGTTTGAAGGACCAATACACGTACAGAGAGGC
CCTGGAGGAGGTCTCGCGCATAGCGAACGTGCTGAAGTCCATGGGCGTCA
AGAGAGGGGACAAGGTGGGGCTCTTCCTGCCCATGGTGGCCGAGCTGCCC
TTGGCTATGCTTGCCTGTGCCAGAATCGGCGCTGTTCACACTGTTGTCTT
CGCTGGCTTCTCCAAAGAGGCGCTGGCTGACCGTCTCTGCGATGCAGGGT
GCAAGGCCGTGATCGCCTGTGACGGTGTTTTTCGCGGCTCCAAGCTCATT
CCACTCTTCCATACTGTCGACGCCGCCATCCAGCTCTGCAATGAGCGGGG
CCACATCATTGAACACACCTTAGTCCTGAAGCGGCTGGGGGGGGACGTAG
CGGGGGTTCACCTGACGCCGGGTCGTGATGTCTGGTGGCACGAGGCGACG
GCAAAGGCATCCTCCTCTTGCCCCGTGGAGTGGGTGCCGTCCGAGCACCC
GCTTTTCATCCTCTACACAAGCGGGAGCACTGGGAAACCCAAAGGGGTTC
TGCACACGACCGGGGGCTACATGATCCAGGCGGCGACCACCTTCCGCCAC
GTGTTTAACGTCCGCCCTGAGAAAAACGACATTTTCCTTTGCACAGCCGA
CTGCGGCTGGATTACCGGGCATAGCTACGTCACGTACGGCCCCCTCTTGA
ACGGGGCCTCCCAGGTCGTCTTCGAAGGCGTGCCCAGTTACCCCGACGTG
GGCCGGCTCTGGCACATGGTCGACAAGTACGGCATCACCCATCTCTACAC
AGCGCCCACCGCGATCCGCTCCCTGATGCGAGAGGGGGACGAGCACGTGA
CAAAGTACGCGCGGAGCAGCCTCAAAGTCCTGGGTTCGGTGGGAGAGCCC
ATCAACCCTGAGGCCTGGAAGTGGTACCACGAGGTGAGGAGTTTGGGGCA
GGGGGGACGGTATGGCGTCGTGGAATTCTTTGGGCAGATTTCTGGGGTGG
GCGTGTGTGGTGGGTCTAGAATTTATGATGGCTATGTGGGGTCGATTAAG
GCACTAAGACACTTGGGTCAGTAGTTCGAGAAATTGGTCCCATGCCATCG
ATGGATCCTGGTGCGTAATTGAGAAAAGAAGATCATGGTGCGTGCTGTGA
AAGGACGGGAAGGTGACGAGGGAGGCAGGAAACTTCTCAGTCACAGTAGT
CTCAAAAGCTAGTAACACCGACGTAGACTCTACAAGAAGTACCCAGCGCG
TCTGACGAGGAGACTAATAGGTGCACTGCCCTTCTACTTTTTTCCGCGGG
AGCAGGTGGTGGGCGGGGGACGGTGCCCGATCGTGGATACCTGGTGGCAG
ACGGAGACAGGTGCCATCGCCATCGCCCCGCTTCCCATTAAAGGCTGGGG
CCAGAAGCCGGGAAGCGCCTCTTTACCATTTCTGGGTATTGAGCCCGTCC
TCCTCTCCCAAGACGGCAAGGAACTAGAGGGTCCGACCGAGGGCCTGCTC
GCCATCAAATCACCCTGGCCCAGCACCTTACGATCTATCTACGGAGACCA
CGAACGCATGGAGCAGACCTACTTCTCCTTCGACGGCTATTACCTGACGG
GCGACAACGCGAGGTAGAGGGCGGGAAGGAGGGAGGGAAGGACGGAGGGA
AGGGGGGAGTGCGGGCAGGTCGACGATCGTAGCTATGCTCATACCCCTCC
CTTTAGGCGCGACTCAGACGGCTACTACTGGATCACGGGTCGGGCGGACG
ACGTGGTCATCGTCTCAGGCCACAACTTGGGAACGGCCGAGGTGGAGGCT
GCCCTGGTCCGTGCACCCCTCCCTTCATTTCTCCCTCTCTCCCTCTCTCC
CTCTCTCCCTCCCTCCCTTGATCCTCGCATGTCGTTCGCTGTGCTAGGCC
AATCGTCTCTGACGTGCATTCATGCGCTGCCTCCCTTCCC
back to top

protein sequence of rna9944

>rna9944-protein ID=rna9944-protein|Name=rna9944|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MCYVEKSHKSEAAASSPAGPVLRSHSAATAERKRQEEKRRLHPQHLGLGE
ETHELNRKGHGRRVTGAGYGRSPGGRGEEVDQDRGVEPGKEEKSTSFMVQ
GKVGHSISFAECGNAGV
back to top

mRNA from alignment at KK037258.1:53691..54188+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9944 ID=rna9944|Name=rna9944|organism=Nannochloropsis gaditana|type=mRNA|length=498bp|location=Sequence derived from alignment at KK037258.1:53691..54188+ (Nannochloropsis gaditana)
TATCTCTCCCACCAATTTACTTTAGATCGAAGTGGCTGCGAGAAACATCG
GTCGGCTACAGCTCGACATACACCCAATCGGGTCTGTTTCAGGGGAGATA
GGACCATAACGTTTCTTCCCCTAATTTCACAGAGGAATGTGCTACGTTGA
GAAATCTCATAAAAGCGAGGCCGCTGCATCCTCTCCTGCTGGCCCCGTTT
TGCGCTCCCACTCAGCTGCCACAGCCGAGAGAAagcgacaggaggaaaaa
cgcCGTCTGCATCCGCAGCACTTGGGGTTGGGCGAGGAAACACATGAATT
GAATAGAAAAGGGCATGGGAGAAGGGTAACGGGGGCTGGATATGGAAGGA
GtccagggggaagaggggaggaggtggaccagGACAGAGGAGTGGAGCct
ggaaaagaggaaaaaagcaCCTCCTTCATGGTACAAGGCAAGGTAGGGCA
TTCAATATCTTTTGCTGAGTGTGGGAATGCAGGTGTTTAGGCCGCTGG
back to top

Coding sequence (CDS) from alignment at KK037258.1:53691..54188+

>rna9944 ID=rna9944|Name=rna9944|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at KK037258.1:53691..54188+ (Nannochloropsis gaditana)
ATGTGCTACGTTGAGAAATCTCATAAAAGCGAGGCCGCTGCATCCTCTCC
TGCTGGCCCCGTTTTGCGCTCCCACTCAGCTGCCACAGCCGAGAGAAagc
gacaggaggaaaaacgcCGTCTGCATCCGCAGCACTTGGGGTTGGGCGAG
GAAACACATGAATTGAATAGAAAAGGGCATGGGAGAAGGGTAACGGGGGC
TGGATATGGAAGGAGtccagggggaagaggggaggaggtggaccagGACA
GAGGAGTGGAGCctggaaaagaggaaaaaagcaCCTCCTTCATGGTACAA
GGCAAGGTAGGGCATTCAATATCTTTTGCTGAGTGTGGGAATGCAGGTGT
TTAG
back to top
Synonyms
Publications