EWM20760.1, cds9913 (CDS) Nannochloropsis gaditana

Overview
NameEWM20760.1
Unique Namecds9913
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:53827..54180 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20760.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100405g1.2127.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:53827..54180 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20760.1 vs. NCBI_GenBank
Match: gi|585100635|gb|EWM20760.1| (hypothetical protein Naga_100405g1 [Nannochloropsis gaditana])

HSP 1 Score: 235.728 bits (600), Expect = 1.554e-78
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:    1 MCYVEKSHKSEAAASSPAGPVLRSHSAATAERKRQEEKRRLHPQHLGLGEETHELNRKGHGRRVTGAGYGRSPGGRGEEVDQDRGVEPGKEEKSTSFMVQGKVGHSISFAECGNAGV 117
            MCYVEKSHKSEAAASSPAGPVLRSHSAATAERKRQEEKRRLHPQHLGLGEETHELNRKGHGRRVTGAGYGRSPGGRGEEVDQDRGVEPGKEEKSTSFMVQGKVGHSISFAECGNAGV
Sbjct:    1 MCYVEKSHKSEAAASSPAGPVLRSHSAATAERKRQEEKRRLHPQHLGLGEETHELNRKGHGRRVTGAGYGRSPGGRGEEVDQDRGVEPGKEEKSTSFMVQGKVGHSISFAECGNAGV 117          
BLAST of EWM20760.1 vs. NCBI_GenBank
Match: gi|553183978|ref|XP_005854006.1| (hypothetical protein NGA_0496200 [Nannochloropsis gaditana CCMP526] >gi|422295056|gb|EKU22355.1| hypothetical protein NGA_0496200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.297 bits (521), Expect = 7.711e-63
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0
Query:    1 MCYVEKSHKSEAAASSPAGPVLRSHSAATAERKRQEEKRRLHPQHLGLGEETHELNRKGHGRRVTGAGYGRSPGGRGEEVDQDRGVEPGKEEKSTSFMVQGKV 103
            MCYVEKSHKSEAAASSPAGPVLRSHSAATAERKRQEEKRRLHPQHLGLGEETH LNRKGHGRRVTGAGYGRSPGGRGEEVDQDRGVEPGKEEKSTSFMVQGK 
Sbjct:    1 MCYVEKSHKSEAAASSPAGPVLRSHSAATAERKRQEEKRRLHPQHLGLGEETHGLNRKGHGRRVTGAGYGRSPGGRGEEVDQDRGVEPGKEEKSTSFMVQGKF 103          
The following BLAST results are available for this feature:
BLAST of EWM20760.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100635|gb|EWM20760.1|1.554e-78100.00hypothetical protein Naga_100405g1 [Nannochloropsi... [more]
gi|553183978|ref|XP_005854006.1|7.711e-6398.06hypothetical protein NGA_0496200 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9944rna9944Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications