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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101058g1.1128.mrna |
| Orig protein id | gnl|cribi|Naga_101058g1.1128 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037257.1 | supercontig | KK037257.1:117791..118702 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9914 ID=rna9914|Name=rna9914|organism=Nannochloropsis gaditana|type=mRNA|length=1936bp
AGGAGGAGAACAAGCGAGAGAAGCGGTGGGCGCCCTGGGGTGGCAGCAGG
AAGGAAATCAGAATAGCAGGAAGGGAAGCCAAGGGAGGGGAAGAAGTCAC
ACGACAAAGCTGTCTGGGGCCATTAACAAAGCGCACCTGATCTCCCTCTC
CTATTGCTGCCCATCGCTCTCCTTATCATGCCGGAACCAGGCGTAGCCCA
CGCCTTTTCCCTGCAACTTAATGCACGAATGTGCCTGTGATGCATGGAAG
TGTAAGGCATGCACCTTCCTGACAGGCCCTAATAGACTGTACGGTGCCCC
AATGCCTGCGTCGTGGGTGCTCTGTGCTATCCCTGAAACACCGCGAGAAC
GTGTTTCACTGCTTTCACGTCCGAGCCTGCCTACAGTGGGGTGCACGAAT
AGGAATTTTAATGTGAAACAAGCGAAGGAAGTGCTCGCTCCCAGCGAGGA
GCGAGGGGGCTCTGGTAAAGTCCTGCAACTATAATCAAAGCCTGGGAGGG
AAAAACGCACATCTCAGCCTTCTTTTCATTCGATTGAACGCTCTTGCCTG
TCCGAAATCGTGAGGCTTGGCGCACACACGACTGCATTTAAATGTGGGTG
TACCGGGGAAAACCTTTGATTCATGCTTTTGGCATCTCTCTCGTTCCATG
CTGGCGCTTCCTGTCCTGACTTTCCTTCCACGTGAAGAGTTATTTTAGGT
GACGGGATGACTGTAGTCGGCACGCCACCCAGTAGTCAACGAGACAATGG
AGAAAACGGGTCGAATTGCAGCGCTCTTCACGCCATGGATAATTTTAATG
TCGCTTTGACGTCAATATCGGAGCAGCTCGAGCCGCTTTTTGCCTTGCCG
TGGGCGGTGGTGTTGGAGAGGTACGGGAGACGACATGCAAAGATAGACAC
ATGTTTAAAATGACACAAGTCGTCACAGTTAGCCTGGGTTGCGCGTGAGG
GAGATTGCCAGGGCTCGCAATCCCCTTCACAATTCGTGGTACCTTGCCCA
CCTCCTGGATACTGTGGGAGAATGCGTGTCGTGCCCCTTTCTTGCGCAAT
CTAAAGCCTTCGTGGTGCACCTTACTATCTTATATGACATATCCCCTCGT
AATCCACCGTTTTTTTGCCACGCATCTAGCCTGAAAGAGGAGGAGCGCGC
GAAACTCTGTCTGGCCATGGCTTACGCTGTTCATTCGTTGTACTACATGC
TCCTACGTACCCGGGGGCAACCGACCAAAACCCATCGCGTACGGGTGGAG
CTGGAGAGGGTAAAGACGTACATGTCTCGGCTGCAAGTGAGTGGGGGCGA
GTCAAAGAGACATAAAGATGGGGATGATCAAGTTGCTCTTTAACATCTTC
TCTTGCTCATACCCCGTTCCTCGCTCCCAATCCGTCCAGGCGGCAGCTCG
CCCTCCTTCCCTCCTTTCCTCCTCCCCTCCCTCCCTCCCTGCCTCTTCCC
CTCCCTCCCTCAAACTGGACGGCAAAGCCTCTGCCCGTATCATAACTGCA
GCCTTACGCCGAGAAGGGCAAGGTCGGGGGGAGATCACGCCGAAGGAAGG
TGGCCAGGAGGAGGGCGGGAAGCAGGGAGGGAGGGAGGGTGGGAAGGAGG
GAGGGAATGGTAGGGAACAAGCAGGACGGGCTCCCAAAAAGCGACGGCGA
GGGTAAGGATAGAACAATGCAACAAGAAAGAAAAGGGGTGGCGAAGAGGA
AAAAAAGCCTCCTGTCGATCTGTCAAGGATGAATACGGGCGGAGAGGGAG
GAGAGAGGCCTGTGGCCCTTGTCGAAATCGAGGCGGTTGCTGGCCCGGGT
CAAGCACAGCTTGGGGGAGGAAGGGGAGGGAGGGAGGGCGGGAGGGCGTG
ATGTACAAAGATGATACCCCGTGGGGGAGAGGAGAGCGGATGCTCGTGCA
CATAGTATGAGAAAGAAATCAGACCTTGCCAATAAG back to topprotein sequence of rna9914 >rna9914-protein ID=rna9914-protein|Name=rna9914|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MPYTSMHHRHIRALSCREKAWATPGSGMIRRAMGSNRRGRSGRPPLLSLV
LLLLLFTILPFVEGGIYGFWKWFRGNVEGEGREGGRRGRRGHRYILSSSK
RPVVNLIHCLRHTKILHMHVCPWPLFYPSLPPSLPPSLLVFLVPGHYKEV
VSKVSSEQYAEFDHVLIDVNQVD back to topmRNA from alignment at KK037257.1:117791..118702+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9914 ID=rna9914|Name=rna9914|organism=Nannochloropsis gaditana|type=mRNA|length=912bp|location=Sequence derived from alignment at KK037257.1:117791..118702+ (Nannochloropsis gaditana)
TCCTATTCGTGCACCCCACTGTAGGCAGGCTCGGACGTGAAAGCAGTGAA
ACACGTTCTCGCGGTGTTTCAGGGATAGCACAGAGCACCCACGACGCAGG
CATTGGGGCACCGTACAGTCTATTAGGGCCTGTCAGGAAGGTGCATGCCT
TACACTTCCATGCATCACAGGCACATTCGTGCATTAAGTTGCAGGGAAAA
GGCGTGGGCTACGCCTGGTTCCGGCATGATAAGGAGAGCGATGGGCAGCA
ATAGGAGAGGGAGATCAGGTGCGCTTTGTTAATGGCCCCAGACAGCTTTG
TCGTGTgacttcttcccctcccttggcttcccttcctgctaTTCTGATTT
CCTTCCTGCTGCCACCCCAGGGCGCCCACCGCTTCTCTCGCttgttctcc
tccttctgctcttTACCATATTGCCGTttgtggaaggaggcatcTATGGT
TTTTGGAAGTGGTTTCGAGGTAAtgttgagggggagggaagggaaggagg
aaggcgtggaaggagaggtcaTCGGtacatcctttcctcctcaaagCGCC
CCGTCGTGAACCTGATACATTGCTTGAGACATACTAAAATACTGCACATG
CACGTTTGTCCGTGGCCCCTTTTttatccatccctccctccctccctccc
tccctccctcctggtcTTCCTGGTCCCAGGGCATTACAAGGAAGTCGTTT
CCAAAGTGAGCAGCGAGCAGTACGCGGAGTTCGACCACGTCCTCATTGAT
GTCAATCAGGTAGATTaaatggaggggagggggggcgggggggaaggaag
ggggggaggaaggggcattAATTTTAAGGCCATAGTCGCTTCGAGCTCTC
TCGTCTCTCGACTTGTGTTTTTCGACAATATACACTCTGTTGTGTTTGGA
AACTCCCATCAA back to topCoding sequence (CDS) from alignment at KK037257.1:117791..118702+ >rna9914 ID=rna9914|Name=rna9914|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at KK037257.1:117791..118702+ (Nannochloropsis gaditana)
ATGCCTTACACTTCCATGCATCACAGGCACATTCGTGCATTAAGTTGCAG
GGAAAAGGCGTGGGCTACGCCTGGTTCCGGCATGATAAGGAGAGCGATGG
GCAGCAATAGGAGAGGGAGATCAGGGCGCCCACCGCTTCTCTCGCttgtt
ctcctccttctgctcttTACCATATTGCCGTttgtggaaggaggcatcTA
TGGTTTTTGGAAGTGGTTTCGAGGTAAtgttgagggggagggaagggaag
gaggaaggcgtggaaggagaggtcaTCGGtacatcctttcctcctcaaag
CGCCCCGTCGTGAACCTGATACATTGCTTGAGACATACTAAAATACTGCA
CATGCACGTTTGTCCGTGGCCCCTTTTttatccatccctccctccctccc
tccctccctccctcctggtcTTCCTGGTCCCAGGGCATTACAAGGAAGTC
GTTTCCAAAGTGAGCAGCGAGCAGTACGCGGAGTTCGACCACGTCCTCAT
TGATGTCAATCAGGTAGATTaaATGCCTTACACTTCCATGCATCACAGGC
ACATTCGTGCATTAAGTTGCAGGGAAAAGGCGTGGGCTACGCCTGGTTCC
GGCATGATAAGGAGAGCGATGGGCAGCAATAGGAGAGGGAGATCAGGGCG
CCCACCGCTTCTCTCGCttgttctcctccttctgctcttTACCATATTGC
CGTttgtggaaggaggcatcTATGGTTTTTGGAAGTGGTTTCGAGGTAAt
gttgagggggagggaagggaaggaggaaggcgtggaaggagaggtcaTCG
GtacatcctttcctcctcaaagCGCCCCGTCGTGAACCTGATACATTGCT
TGAGACATACTAAAATACTGCACATGCACGTTTGTCCGTGGCCCCTTTTt
tatccatccctccctccctccctccctccctccctcctggtcTTCCTGGT
CCCAGGGCATTACAAGGAAGTCGTTTCCAAAGTGAGCAGCGAGCAGTACG
CGGAGTTCGACCACGTCCTCATTGATGTCAATCAGGTAGATTaa back to top
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