EWM20790.1, cds9883 (CDS) Nannochloropsis gaditana

Overview
NameEWM20790.1
Unique Namecds9883
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:117935..118058 +
Alignment locationKK037257.1:118161..118558 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20790.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101058g1.1128.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:117935..118058 +
KK037257.1supercontigKK037257.1:118161..118558 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20790.1 vs. NCBI_GenBank
Match: gi|585100679|gb|EWM20790.1| (hypothetical protein Naga_101058g1 [Nannochloropsis gaditana])

HSP 1 Score: 351.673 bits (901), Expect = 1.117e-122
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 
Query:    1 MPYTSMHHRHIRALSCREKAWATPGSGMIRRAMGSNRRGRSGRPPLLSLVLLLLLFTILPFVEGGIYGFWKWFRGNVEGEGREGGRRGRRGHRYILSSSKRPVVNLIHCLRHTKILHMHVCPWPLFYPSLPPSLPPSLLVFLVPGHYKEVVSKVSSEQYAEFDHVLIDVNQVD 173
            MPYTSMHHRHIRALSCREKAWATPGSGMIRRAMGSNRRGRSGRPPLLSLVLLLLLFTILPFVEGGIYGFWKWFRGNVEGEGREGGRRGRRGHRYILSSSKRPVVNLIHCLRHTKILHMHVCPWPLFYPSLPPSLPPSLLVFLVPGHYKEVVSKVSSEQYAEFDHVLIDVNQVD
Sbjct:    1 MPYTSMHHRHIRALSCREKAWATPGSGMIRRAMGSNRRGRSGRPPLLSLVLLLLLFTILPFVEGGIYGFWKWFRGNVEGEGREGGRRGRRGHRYILSSSKRPVVNLIHCLRHTKILHMHVCPWPLFYPSLPPSLPPSLLVFLVPGHYKEVVSKVSSEQYAEFDHVLIDVNQVD 173
[Close]
BLAST of EWM20790.1 vs. NCBI_GenBank
Match: gi|585100678|gb|EWM20789.1| (hypothetical protein Naga_101058g1 [Nannochloropsis gaditana])

HSP 1 Score: 157.918 bits (398), Expect = 5.150e-47
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0 
Query:    1 MPYTSMHHRHIRALSCREKAWATPGSGMIRRAMGSNRRGRSGRPPLLSLVLLLLLFTILPFVEGGIYGFWKWFRGNVE 78
            MPYTSMHHRHIRALSCREKAWATPGSGMIRRAMGSNRRGRSGRPPLLSLVLLLLLFTILPFVEGGIYGFWKWFRG+ +
Sbjct:    1 MPYTSMHHRHIRALSCREKAWATPGSGMIRRAMGSNRRGRSGRPPLLSLVLLLLLFTILPFVEGGIYGFWKWFRGHYK 78

HSP 2 Score: 62.3882 bits (150), Expect = 1.032e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 
Query:  145 GHYKEVVSKVSSEQYAEFDHVLIDVNQVD 173
            GHYKEVVSKVSSEQYAEFDHVLIDVNQVD
Sbjct:   75 GHYKEVVSKVSSEQYAEFDHVLIDVNQVD 103
The following BLAST results are available for this feature:
BLAST of EWM20790.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100679|gb|EWM20790.1|1.117e-122100.00hypothetical protein Naga_101058g1 [Nannochloropsi... [more]
gi|585100678|gb|EWM20789.1|5.150e-4796.15hypothetical protein Naga_101058g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9914rna9914Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications