rna9911, rna9911 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9911
Unique Name	rna9911
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2906
Alignment location	KK037257.1:113002..114238 +

Link to JBrowse

Properties


Property Name	Value
Product	v-type h -transporting atpase 54 kd subunit
Orig transcript id	gnl\|cribi\|Naga_100342g7.380.mrna
Orig protein id	gnl\|cribi\|Naga_100342g7.380
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:113002..114238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100342g7	gene9618	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9911	rna9911-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20794.1	cds9880	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:113002..114238+
coding sequence from alignment at KK037257.1:113002..114238+

mRNA sequence

>rna9911 ID=rna9911|Name=rna9911|organism=Nannochloropsis gaditana|type=mRNA|length=2906bp
GCCTATACACCGTGAAAAGCCTTGAAATCTCATTGAAAGATCGAGCGGAT
AATTATCTAAAGTAATACAATATTAAAACACAACTTTTCATTCCACGTCA
TGCATCCTATCGTAGGATCATGTCGGAAAGATCTCTGTCGGGAAAGCCGC
CACACCAGGAACAGTGGTATGACCAGCCGAGGGGACAAGATCACCGCCAG
CTAGGTGACGACCACTTTTCAATGCAGACGCCAGGGACTGGTGCAGAAAG
GGACGAAAATCAGCGCCACTTGCCGCATTCAAGCCCGCAGGATCCCAATT
TGCAGTCTCTGTCGGAGACGCCCGTGTTGCAAGCTTCTGGCCTGCCCTCC
GACCCGGTACACACGCGCAGGGGCTCTACGTTCACGTCGTCGGTACTCCC
TACAGGGGACACGAATACAGGTGCTACTGATTCAATTGACACGACGAGAA
CGCATCCCGTCCACCGTTTCTCCTTCCAGTCCCAACATAAAGCCAAGAGC
TCATCAGCCCTCGCTCCGACAGTGTCTACCTCCGGTACCTTCAAGCCGGG
CCAAAGTCCTCCGCCTATGCACCGACAAGCATCCTTATCGCAAGGATCTT
CTCTGTATGCCTCCAACCTCCGTCCTATCACCTCTCTGCCCGACCGTGGC
GAGAGTATTCGAAACTTCGGTCTTCCCCGCCCGGCGCACAGGGACGAGGG
GAGAAAGAATCGGAATAGAACCCCAGGGCTGCTTCCTGTGCTCTCCATGG
CTGTCATGGGTTTAAGCTCTGACACCCATGGGAGTCCCCGTGCAGGAGAA
GAAGGGGGCGCAGAGGAACAGCCAGAAGCCGTAGGCTCCCTGACGCGTAT
GGTCACGCAAAAATTCAGCAAAGGCACGGAGGACGGCGACAAGAGCGATT
TTGCGCGGTTTTGGTCGGCACTGGCCGGTTTCAGCAAAAAGATGTGCGCG
TGTTGTGGTTGGGGCGCGAAGAAAGTGTTCACCGAGGGGATCAAGCAATT
CGGAGAAAGGCCGTATTGGGAAGAAGAAAAGGAGTGGGCGGAGAGTCCTG
AGGAAGGAGAGACCCCGGACGACGATATGGATGTGGAGGACGTGCGAGCC
CAGTACGTGCTGGGTACGCTGTCGTCCACGCACTTGGAGGGACTCGAGGG
GGTGGACAGGCCGGGAGGGAAGGTTGGCAACGAGGCCGCTGTGATTCGAA
AGGAAGATTTTCTGATGAAACTCGCCGTCTCTTTGCTCTCGTACGGGTGC
CCGATTCCACGGATTGAATACAGCATGCAAGTCCTCCTCCAGACCATGGG
CATGGAAGGCTCCTTTATCATTCTCCCGAACATCATGTTCATCTCCTTCG
GCTCGCCCAGTGCTTCCAACACGGAGACCCACATCCTCCCCGTCGGGGGG
GGGCTCGACGTGTACAAACTCCGCCGGGTCAATCATCTCGTGAACCTGAT
TTTGGAGCAGCGCATCCCTTCCCTACCTTTTGCGATCAAGAAGCTTGACA
GCATGATCGCCGAGCCTCCCCTGTATTCCTGGCAAGTCAAACTGGCCTGC
TACACCATTGCCTCGGGATGTGTCGCCCCTCTTTTCTTCTCGGGCTCGTT
GATTGACGGTCTACTGGCGGGCTTTGTCGGCATTTTTGCGGGGGGGCTGT
GGGTGATGGCGGACGTGTCCTATATTGTCGGGAAGTTGGGAGTGTTTGCC
TCGGCGTGGCTAGCATCGTTCCTCGCCACCATTTTGGCGGCCCATATCCC
CAACACCTGCTCCCTGGCCATTCATTTTGGGCCCATTGTCTACCTCCTCC
CCGGCTGGAGCATCACGTCCTCCATCATTGAACTGTCGACGCAAAGCATG
ATCTCAGGGACCGTCAGAATGATGACGGCCCTCATGAACGCCCTTTTGAT
TGGTTTCGGCCTCGATTTAGGGCACCGAATGACCTTCTGGGAGAGTAATG
TTAGCTGGACGTCGACGGAAAACTGTAACCCAGTCTCTATGTGGACCCAA
ATTCCTCTCTTCATCGCCACCGTGACCTGTTTCAACATACTTATGAAAGC
AGCTCCGGTCCAATGGCTGAGTATGCTCATTGTAGCCGCGATTGGCTACG
TCACCATCAATTTGGCGCCGACGGTGGGGGAAATGACACCCGGGAGCAGC
ACGGTGCTGACCGCCTTTGTGTGTGGCGTGGCGGGGAATCTGTACGCCTA
CGCGACGAACAGCCCTGCCTTGGTCCCTATCTTGGCCGGGGTGTTTTTGA
TCGTGCCAGGGGGAATGAGCGTCAGGGGCGTGGAAAAATGGCTGAATGAC
GACCTGAATGGCGGCTTGGATTTTGGCAGTGGGATGATGCTGGTGGCCGT
CTCCATCTCCATCGGTCTCTTTGCCTCCAGTGTCATCATGTACCGGCCCA
AGTTGAAGATTTCCAATGCCGTCTTCTTCTAGAACGTCCAGGCGCGATCT
TGCGTCTTCTAGAACGTCCAGGCGCAATCTTGCGAGTAGCTTCATTTAAA
ACCCGTGGTGACTATGGCGTACATCGTAAAAGTGAACGTGAGGATGGAGG
GAGAGAACAAGAGAAAGGAGAAAAGCGAACGAGCAAACGCAAGAAAAACT
AGATTAAAGAATTTTGTATAACGTGCTTTTTATAGTTAGAAAGGTAGTTT
AAATCCACGAAAGCTTTTTAAAAAAGGCCGAGAAGGTGAGAATCAAAAAT
GCAAATTTGAAGAAAGGCCAAATTTGCGCGGATGTTTCCGGTGCGTTGCA
GGATTAATAAAAAAGAAAACCCGAGAAATTCCTTAAGGAGCAAGATTTGG
TATTTTTGATAAATGCGTACGTAAAATCTTCAATGAGTTGATAGTAGGAG
CATCATAAATGGCTGGCAATCAGTAGAAAAAGGAACTCAATCCTCATAAT
GTTATC

protein sequence of rna9911

>rna9911-protein ID=rna9911-protein|Name=rna9911|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MTEPPSTPTGASILPAGSDSSEVLTDREQVLASFTNIQWDTYGRTMLDAG
EVKILKDCDDKPLDFLLADPGDASKLVDTLLKLLNSVSDLVIQQYALTQL
QDILSDNLPQRAPLFSHDGGQDFRRSAFFCGPSMARTCTASKVRPRSWRS
CSRYTLLPPLP

mRNA from alignment at KK037257.1:113002..114238+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9911 ID=rna9911|Name=rna9911|organism=Nannochloropsis gaditana|type=mRNA|length=1237bp|location=Sequence derived from alignment at KK037257.1:113002..114238+ (Nannochloropsis gaditana)
CAGCGAGGGGAATCTCCCCTTATGTACACTTCATCAAAATCTCATTTGGG
CACTTCACGTCCTCGAAATTCACATGCCTCGCGTTTATCTTTCTCTTGCC
CCGAAGGTCGCTACGTGCTGCTTCCTTTTGCGTTCAGGAAGACGAAGCTG
GGACGGTGGAAGAGATAACGAGGACAAGACTCTGTAGGAGGAGACGATGA
CGGAACCCCCTTCGACTCCGACGGGCGCAAGCATCCTCCCGGCCGGGTCG
GACTCCTCGGAAGTTCTCACTGATAGAGAGCAGGTGTTGGCTTCTTTTAC
CAATATCCAGTGGGACACCTACGGACGAACGATGCTGGATGCAGGAGAgg
tgagggtggaagggacggagaaggggaggacacgaGGTTTCAAATCAGGC
ACAAAGGATTTAAATGTTGCGTGATTTCTACAAAAATACGCATGTATGCG
AGTGAGTTTACCCGCAGCCATGGAGCGGTAGCCATGTCGAAGTGCGttgt
ccccttcccctctagGCATGCAggcccatcctccctcgcatttTTATTTC
ACGCCCCACCCCAGGTGAAGATTTTGAAAGACTGCGACGACAAACCCCTG
GACTTCCTTTTGGCCGACCCTGGGGACGCGTCGAAGCTTGTGGACACGTT
GCTGAAGCTTTTGAACTCAGTCAGCGACCTGGTCATTCAGCAGTACGCCC
TGACCCAGCTTCAAGACATCCTCTCCGACAACCTGCCCCAGgtacctttc
cctccctccctccctctctccctccctccctccttttctccctatctttc
gtccctcccgcttACGCGTCATGTGGTTGACCTTGCGATGGCTGGAAACC
TCCGTGCTGTCccggcccccttccctccccgccatcatcccgcccctcct
tccctcccttttacCCCGGTTGATTTACCGCACTGCAGTGGTATCCAACT
TTTCTCCcatcctctgcttccttgtTTTGCCGAGGGCCAAGACGTGCCCC
TCCCTAGCAGCTTAGAAaactcttctccctcctttccctccctccctccc
tcctttccttccctccttccctccctcccgtcagcgcgcccccctcttct
cccacgACGGGGGGCAAGACTTTCGACGCTCTGCCTTTTTTTGCGGGCCT
TCGATGGCTCGGACCTGTACTGCAAGCAAAGTGCGGCCACGGTCATGGCG
CTCCTGTTCAAGGTacaccctcctgcctcccctccct

Coding sequence (CDS) from alignment at KK037257.1:113002..114238+

>rna9911 ID=rna9911|Name=rna9911|organism=Nannochloropsis gaditana|type=CDS|length=1449bp|location=Sequence derived from alignment at KK037257.1:113002..114238+ (Nannochloropsis gaditana)
ATGACGGAACCCCCTTCGACTCCGACGGGCGCAAGCATCCTCCCGGCCGG
GTCGGACTCCTCGGAAGTTCTCACTGATAGAGAGCAGGTGTTGGCTTCTT
TTACCAATATCCAGTGGGACACCTACGGACGAACGATGCTGGATGCAGGA
GAgGTGAAGATTTTGAAAGACTGCGACGACAAACCCCTGGACTTCCTTTT
GGCCGACCCTGGGGACGCGTCGAAGCTTGTGGACACGTTGCTGAAGCTTT
TGAACTCAGTCAGCGACCTGGTCATTCAGCAGTACGCCCTGACCCAGCTT
CAAGACATCCTCTCCGACAACCTGCCCCAGcgcgcccccctcttctccca
cgACGGGGGGCAAGACTTTCGACGCTCTGCCTTTTTTTGCGGGCCTTCGA
TGGCTCGGACCTGTACTGCAAGCAAAGTGCGGCCACGGTCATGGCGCTCC
TGTTCAAGGTacaccctcctgcctcccctccctATGACGGAACCCCCTTC
GACTCCGACGGGCGCAAGCATCCTCCCGGCCGGGTCGGACTCCTCGGAAG
TTCTCACTGATAGAGAGCAGGTGTTGGCTTCTTTTACCAATATCCAGTGG
GACACCTACGGACGAACGATGCTGGATGCAGGAGAgGTGAAGATTTTGAA
AGACTGCGACGACAAACCCCTGGACTTCCTTTTGGCCGACCCTGGGGACG
CGTCGAAGCTTGTGGACACGTTGCTGAAGCTTTTGAACTCAGTCAGCGAC
CTGGTCATTCAGCAGTACGCCCTGACCCAGCTTCAAGACATCCTCTCCGA
CAACCTGCCCCAGcgcgcccccctcttctcccacgACGGGGGGCAAGACT
TTCGACGCTCTGCCTTTTTTTGCGGGCCTTCGATGGCTCGGACCTGTACT
GCAAGCAAAGTGCGGCCACGGTCATGGCGCTCCTGTTCAAGGTacaccct
cctgcctcccctccctATGACGGAACCCCCTTCGACTCCGACGGGCGCAA
GCATCCTCCCGGCCGGGTCGGACTCCTCGGAAGTTCTCACTGATAGAGAG
CAGGTGTTGGCTTCTTTTACCAATATCCAGTGGGACACCTACGGACGAAC
GATGCTGGATGCAGGAGAgGTGAAGATTTTGAAAGACTGCGACGACAAAC
CCCTGGACTTCCTTTTGGCCGACCCTGGGGACGCGTCGAAGCTTGTGGAC
ACGTTGCTGAAGCTTTTGAACTCAGTCAGCGACCTGGTCATTCAGCAGTA
CGCCCTGACCCAGCTTCAAGACATCCTCTCCGACAACCTGCCCCAGcgcg
cccccctcttctcccacgACGGGGGGCAAGACTTTCGACGCTCTGCCTTT
TTTTGCGGGCCTTCGATGGCTCGGACCTGTACTGCAAGCAAAGTGCGGCC
ACGGTCATGGCGCTCCTGTTCAAGGTacaccctcctgcctcccctccct

Synonyms

Publications