EWM20794.1, cds9880 (CDS) Nannochloropsis gaditana

Overview
NameEWM20794.1
Unique Namecds9880
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:113198..113350 +
Alignment locationKK037257.1:113566..113742 +
Alignment locationKK037257.1:114086..114238 +

Link to JBrowse

Properties
Property NameValue
End range.
End range114238
Protein idEWM20794.1
Productv-type h -transporting atpase 54 kd subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_100342g7.380.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:113198..113350 +
KK037257.1supercontigKK037257.1:113566..113742 +
KK037257.1supercontigKK037257.1:114086..114238 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0046961proton-transporting ATPase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0015991ATP hydrolysis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0005773vacuole
GO:0016020membrane
GO:0000221vacuolar proton-transporting V-type ATPase, V1 domain
Vocabulary: INTERPRO
TermDefinition
IPR004908ATPase_V1-cplx_hsu
IPR011989ARM-like
Homology
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BLAST of EWM20794.1 vs. NCBI_GenBank
Match: gi|585100685|gb|EWM20794.1| (v-type h+-transporting atpase 54 kd subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 327.405 bits (838), Expect = 2.170e-113
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 
Query:    1 MTEPPSTPTGASILPAGSDSSEVLTDREQVLASFTNIQWDTYGRTMLDAGEVKILKDCDDKPLDFLLADPGDASKLVDTLLKLLNSVSDLVIQQYALTQLQDILSDNLPQRAPLFSHDGGQDFRRSAFFCGPSMARTCTASKVRPRSWRSCSRYTLLPPLP 161
            MTEPPSTPTGASILPAGSDSSEVLTDREQVLASFTNIQWDTYGRTMLDAGEVKILKDCDDKPLDFLLADPGDASKLVDTLLKLLNSVSDLVIQQYALTQLQDILSDNLPQRAPLFSHDGGQDFRRSAFFCGPSMARTCTASKVRPRSWRSCSRYTLLPPLP
Sbjct:    1 MTEPPSTPTGASILPAGSDSSEVLTDREQVLASFTNIQWDTYGRTMLDAGEVKILKDCDDKPLDFLLADPGDASKLVDTLLKLLNSVSDLVIQQYALTQLQDILSDNLPQRAPLFSHDGGQDFRRSAFFCGPSMARTCTASKVRPRSWRSCSRYTLLPPLP 161
The following BLAST results are available for this feature:
BLAST of EWM20794.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100685|gb|EWM20794.1|2.170e-113100.00v-type h+-transporting atpase 54 kd subunit, parti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9911rna9911Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications