rna9909, rna9909 (mRNA) Nannochloropsis gaditana

Overview
Namerna9909
Unique Namerna9909
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1656
Alignment locationKK037257.1:105959..107567 +

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Properties
Property NameValue
Productmembrane protein
Orig transcript idgnl|cribi|Naga_100342g4.381.mrna
Orig protein idgnl|cribi|Naga_100342g4.381
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:105959..107567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100342g4gene9616Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9909rna9909-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20795.1cds9878Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9909 ID=rna9909|Name=rna9909|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp
GGTCTTTTGGCATTTTTCAAGCATGGTCGCACACAATGCAATGAATAAGG
ACAATATACATGCGGAAAAAAAGGATGTAATTTTCCGTGCCGATTAAAGA
TTACAATCGTTCGTTCTCTCCGCGTGAGATAAATCCATTCTAACTGAGGG
GTGATCTCATTCTTCGTCAGAGCACCGGACTGACTCTCCGCCCTCATTTA
CCTCCTTCACAACATGTGACGATAGCTCTGTAGGTTTTCAAACATCTGGT
GTACCCCCAAGCACTAGCATCATGGAGGTTGAATTTATGCTGGATAGCAG
TGAGGACAAGAAACGGGCAACCGAGAACATCCTCAGACAGACCCGCGAAG
CTTCTCGTGTGGACGTACACAAAGAGGAGGATCATTTGTGGTCTTTGGCT
TCGGGGAAATTGTGCGAACAGATCAAAAAGGACGGCAAAAATTTGGGCAA
GGGTATTTTGAAGGTCAATAGCTTCATCAACCATCGCGTGGACGTGGGAC
TTGTCGACTTATGCGGGCATGCGCTCGCCGACTGCTTCAAGAACAGAGAC
GTCACCCTCATCCTGACGGCCCAAACAAGCGGAGTCCTGCCGGCCCAAGC
GTGTGCCCGGTACCTGGAGCGGCCCATGATTTTCGCACGGGAAAAGAAGC
CCATCACCATCTCAGAGTCCTACCAGTCCCAGAGCCGGAGCCACACCCGC
CGGATGGACGTCTCCCTCTTCGTCGCCAAAGAATTCATGGGCCCAAGCGA
TCGAGTCCTCATAGTGGATGATTTTCTGGCCTCAGGCACGACCGCTGTCG
CCCTCCTTGATATCGTCCGGCAGGCTGGGGCGACATGTCTGGGCTTCGGA
TTCTTGGTCGAGAAAGAGTTTGAAAAAGGGCGGGAACTTCTTATAAAGGC
CTTGAAGGAAGGAAAGGAGGACGATGAGAAAGGAAGGGAGGAGGAGATCC
GCATTGTGTGCTTGGCGAACGTGGTCGCCCTCGACGGGGAGGAAGGGGGT
GAGATTCGCTTGGGCGGTGGGAAGAAGTCATAGGCACGAAGAGAGCATGG
TCTCAGGACAAGGATGATGGGATCAATTTCGCCATTTGTTCTTCAGAGCC
CAAACTAATGGGGGTAGGTGGAGGCCGAGCACAAACATAGCACGGGGAGG
TGGAATGAGATACACAGCCTCTGTTTCGATGATTGGTGCTTTTTTTACAA
TTTGGCATATACCATACAAAAAACTAACCATGTTTTTTGGGGAGATGGAC
AGGAAAGAGTCCCTCTGCAAGTAATCAGGATTTGCATGTACGGCTTACCC
TTGTGTGTGCTAAGCTGGAGTTACCTCTTGAAGTAGCACTTCAATATCTT
GGCAAATTTCGTCGTTCCTATTGTAGTTGCTTACGATGGCAGTGCTTTCA
AGGAAGTTTCCATTCTTAGGACACAGGAGGCACATCTCCTGAAAAACTAC
TGAATTGATGCAGCCCCGTCTTGGCTAAGGATGGTTGGCATGTATGTACA
CAATATTCGGTATTTTTGCTATTGTTCGAATGTCAGGAGTATCATAAATT
TAACTCCAATATAATAGCGCCATACATCGCATGTGGCTCAATTGCACAAA
GATCAGGGGTCAACTGATCTGCGCCTCCCGCGATCGACCGCTCAGAGGTA
TGGATC
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protein sequence of rna9909

>rna9909-protein ID=rna9909-protein|Name=rna9909|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQPVSAWA
KIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSS
STVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWIN
NDLNGGLAFGSGIVMIAVSISIGLFASSVLMYKPRMKISNAVFF
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mRNA from alignment at KK037257.1:105959..107567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9909 ID=rna9909|Name=rna9909|organism=Nannochloropsis gaditana|type=mRNA|length=1609bp|location=Sequence derived from alignment at KK037257.1:105959..107567+ (Nannochloropsis gaditana)
GAACCAAATTTTGGAAGTGcgcattccttccctccttcacgctATCAAGA
AGCTTGACAGTCTGATCGCCGAGCCTCCCCTGTATTCCTGGCAAGTCAAA
CTGGCCTGCTACACCATTGCCTCGGGATGTGtcgcccctcttttcttctc
gggCTCGTTGATTGATGGTCTATTGGCGGGCTTCCTCGGATTCTTTGCGG
GATGTTTGTGGGTGCTAGCGGACGTGTCCTACATTGTGGGAAAAGTAGGT
TTGGTTGCTTCTGCATGGCTGTCGTCGTTTTGTGCCACAATTTTGACTTC
CCACATTCCGAACCTTTGCCCGCTGGCCATTCATTTTGGACCCGTTGtat
acctcctccccggctgGAGCATCACGTGTGCTGTCATTGGTAAGCTTCAG
CTCGCTTTCATTCATGATTACGTTTAAAGACGTAAGGTGGTGTGTATGAT
GTTGGATTAATTCGGGGTCGTGCGATCAAAATTCTCTCCGTCCCGCGTGC
TGCCCCCGAAAGAATCGTGAAACTCTACTCGAAtactctccccctccaat
aCATACACCAGAGCTCTCGACACAAAACATGTTATCTGGGACAATACGCA
TGATGACCGCCCTCATGAATGCGCTCTTGCTTGGATTTGGCCTTGATTTG
GGTAGGTAGAGCCAGAATCAGGACgtacgggaagggaggacatggtgtAG
AAGCTTACGTCCCTGCAGGGTCCCGAACAAAAAACAACCCGCAATATCCC
TGCGCTTGCTCATGCCTCCCATGCATTACGCACTTGTCCGAGCAGGGCAT
CGAATGGCCTTCTGGGAAAACACAAGCAGTTGGGTCTCCACGGAACACTG
CCAACCTGTCTCTGCCTGGGCCAaaattcctcttttcctttctacCATCA
CCTGCTTCAACATCCTGATGAAAGGCGCCCCAGCTCAATGGCTGGGTATG
CTTTGTGTCGCGGCCATCTCTTTCCTGACCATCAATTTAGCCCCGACCTT
GCACAACATGTCTTCCAGCAGTAGCACCGTTTTAGCCGCCTTTTTCGTTG
GCGTGGCTGGAAATTTGTATGCTTATGCCACCAATAGCCCCGCCTTGATC
CCTATCTTGTCCGGAATCTTCTTGATCGTACCGGGTGGAATGAGTGTGAA
AGGAGTGAAAGCATGGATCAATAATGACTTGAACGGCGGCCTGGCCTTTG
GAAGTGGAATTGTGATGATTGCGGTATCTATTTCTATCGGTCTCTTTGCC
TCGAGCGTCTTGATGTATAAACCTAGGATGAAAATTTCCAACGCTGTCTT
TTTCTGAGCTAGATTAATTAAAAGCGTGATTGCTGTTCTCCTATTTGTGT
GAAACTTCACATGTCAATGAAAAATCGGCAATTAGTGCTTCTCAGGTCGA
TCAATCGATGAGCTTGAGGTAACACAGATAGTAGCATTAGGGTACATGTG
GTAATGACTTGTCGAAATtcagtgaggaggaaaaaattaGAATGGTATAG
CCATTTGAAAGCAAGAAAGGATCGCGTGTGCATTTGGAGATATACCGCCt
gtgaaaaaaaaaaatgagaaaGCGATgaaagcagggaaaagaaagattCA
AAACTTGCA
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Coding sequence (CDS) from alignment at KK037257.1:105959..107567+

>rna9909 ID=rna9909|Name=rna9909|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at KK037257.1:105959..107567+ (Nannochloropsis gaditana)
ATGTTATCTGGGACAATACGCATGATGACCGCCCTCATGAATGCGCTCTT
GCTTGGATTTGGCCTTGATTTGGGGCATCGAATGGCCTTCTGGGAAAACA
CAAGCAGTTGGGTCTCCACGGAACACTGCCAACCTGTCTCTGCCTGGGCC
AaaattcctcttttcctttctacCATCACCTGCTTCAACATCCTGATGAA
AGGCGCCCCAGCTCAATGGCTGGGTATGCTTTGTGTCGCGGCCATCTCTT
TCCTGACCATCAATTTAGCCCCGACCTTGCACAACATGTCTTCCAGCAGT
AGCACCGTTTTAGCCGCCTTTTTCGTTGGCGTGGCTGGAAATTTGTATGC
TTATGCCACCAATAGCCCCGCCTTGATCCCTATCTTGTCCGGAATCTTCT
TGATCGTACCGGGTGGAATGAGTGTGAAAGGAGTGAAAGCATGGATCAAT
AATGACTTGAACGGCGGCCTGGCCTTTGGAAGTGGAATTGTGATGATTGC
GGTATCTATTTCTATCGGTCTCTTTGCCTCGAGCGTCTTGATGTATAAAC
CTAGGATGAAAATTTCCAACGCTGTCTTTTTCTGAATGTTATCTGGGACA
ATACGCATGATGACCGCCCTCATGAATGCGCTCTTGCTTGGATTTGGCCT
TGATTTGGGGCATCGAATGGCCTTCTGGGAAAACACAAGCAGTTGGGTCT
CCACGGAACACTGCCAACCTGTCTCTGCCTGGGCCAaaattcctcttttc
ctttctacCATCACCTGCTTCAACATCCTGATGAAAGGCGCCCCAGCTCA
ATGGCTGGGTATGCTTTGTGTCGCGGCCATCTCTTTCCTGACCATCAATT
TAGCCCCGACCTTGCACAACATGTCTTCCAGCAGTAGCACCGTTTTAGCC
GCCTTTTTCGTTGGCGTGGCTGGAAATTTGTATGCTTATGCCACCAATAG
CCCCGCCTTGATCCCTATCTTGTCCGGAATCTTCTTGATCGTACCGGGTG
GAATGAGTGTGAAAGGAGTGAAAGCATGGATCAATAATGACTTGAACGGC
GGCCTGGCCTTTGGAAGTGGAATTGTGATGATTGCGGTATCTATTTCTAT
CGGTCTCTTTGCCTCGAGCGTCTTGATGTATAAACCTAGGATGAAAATTT
CCAACGCTGTCTTTTTCTGA
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Synonyms
Publications