EWM20795.1, cds9878 (CDS) Nannochloropsis gaditana

Overview
NameEWM20795.1
Unique Namecds9878
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:106537..106609 +
Alignment locationKK037257.1:106754..107265 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20795.1
Productmembrane protein
Orig transcript idgnl|cribi|Naga_100342g4.381.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:106537..106609 +
KK037257.1supercontigKK037257.1:106754..107265 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR024528DUF3815
Homology
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|585100686|gb|EWM20795.1| (membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 385.571 bits (989), Expect = 1.995e-135
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMYKPRMKISNAVFF 194
            MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMYKPRMKISNAVFF
Sbjct:    1 MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMYKPRMKISNAVFF 194          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|553184466|ref|XP_005854092.1| (pheromone-regulated membrane protein [Nannochloropsis gaditana CCMP526] >gi|422294970|gb|EKU22269.1| pheromone-regulated membrane protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 310.071 bits (793), Expect = 1.388e-105
Identity = 145/194 (74.74%), Postives = 173/194 (89.18%), Query Frame = 0
Query:    1 MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMYKPRMKISNAVFF 194
            M+SGT+RMMTALMNALL+GFGLDLGHRM FWE+  SW STE+C PVS W +IPLF++T+TCFNILMK AP QWL ML VAAI ++TINLAPT+  M+  SSTVL AF  GVAGNLYAYATNSPAL+PIL+G+FLIVPGGMSV+GV+ W+N+DLNGGL FGSG++++AVSISIGLFASSV+MY+P++KISNAVFF
Sbjct:    1 MISGTVRMMTALMNALLIGFGLDLGHRMTFWESNVSWTSTENCNPVSMWTQIPLFIATVTCFNILMKAAPVQWLSMLIVAAIGYVTINLAPTVGEMTPGSSTVLTAFVCGVAGNLYAYATNSPALVPILAGVFLIVPGGMSVRGVEKWLNDDLNGGLDFGSGMMLVAVSISIGLFASSVIMYRPKLKISNAVFF 194          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|585100688|gb|EWM20797.1| (membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 312.768 bits (800), Expect = 2.533e-99
Identity = 145/194 (74.74%), Postives = 173/194 (89.18%), Query Frame = 0
Query:    1 MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMYKPRMKISNAVFF 194
            M+SGT+RMMTALMNALL+GFGLDLGHRM FWE+  SW STE+C PVS W +IPLF++T+TCFNILMK AP QWL ML VAAI ++TINLAPT+  M+  SSTVL AF  GVAGNLYAYATNSPAL+PIL+G+FLIVPGGMSV+GV+ W+N+DLNGGL FGSG++++AVSISIGLFASSV+MY+P++KISNAVFF
Sbjct:  577 MISGTVRMMTALMNALLIGFGLDLGHRMTFWESNVSWTSTENCNPVSMWTQIPLFIATVTCFNILMKAAPVQWLSMLIVAAIGYVTINLAPTVGEMTPGSSTVLTAFVCGVAGNLYAYATNSPALVPILAGVFLIVPGGMSVRGVEKWLNDDLNGGLDFGSGMMLVAVSISIGLFASSVIMYRPKLKISNAVFF 770          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|553183310|ref|XP_005853873.1| (pheromone-regulated membrane protein [Nannochloropsis gaditana CCMP526] >gi|422295187|gb|EKU22486.1| pheromone-regulated membrane protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 312.768 bits (800), Expect = 6.201e-99
Identity = 145/194 (74.74%), Postives = 173/194 (89.18%), Query Frame = 0
Query:    1 MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMYKPRMKISNAVFF 194
            M+SGT+RMMTALMNALL+GFGLDLGHRM FWE+  SW STE+C PVS W +IPLF++T+TCFNILMK AP QWL ML VAAI ++TINLAPT+  M+  SSTVL AF  GVAGNLYAYATNSPAL+PIL+G+FLIVPGGMSV+GV+ W+N+DLNGGL FGSG++++AVSISIGLFASSV+MY+P++KISNAVFF
Sbjct:  611 MISGTVRMMTALMNALLIGFGLDLGHRMTFWESNVSWTSTENCNPVSMWTQIPLFIATVTCFNILMKAAPVQWLSMLIVAAIGYVTINLAPTVGEMTPGSSTVLTAFVCGVAGNLYAYATNSPALVPILAGVFLIVPGGMSVRGVEKWLNDDLNGGLDFGSGMMLVAVSISIGLFASSVIMYRPKLKISNAVFF 804          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|470436808|ref|XP_004338930.1| (membrane protein, putative [Acanthamoeba castellanii str. Neff] >gi|440795801|gb|ELR16917.1| membrane protein, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 128.257 bits (321), Expect = 8.681e-31
Identity = 65/184 (35.33%), Postives = 112/184 (60.87%), Query Frame = 0
Query:    1 MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWV---STEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHN-MSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVL 180
            M+SGT R+ +A++  L LGFG+ LG ++  W +  +++    +  C  +     IPLFL     FN+L++  P QW G++ V A+  LTI+   + +   S   ++ LAAF VG  GN++A  +  PA++ I++G+ L+VPG + VKGVK+ + +D+  G+ FG  ++ IA+SI +GL  +++ 
Sbjct:  650 MISGTTRIFSAIITTLQLGFGMTLGMKLVMWTSEDNFIVMRDSVSCSGIGGPWTIPLFLCVSITFNLLLEAHPRQW-GIMMVTALLSLTISEVTSYYGYFSDELASALAAFAVGAVGNIHARISGHPAIVSIIAGVLLLVPGSIGVKGVKSLMEDDVVSGIQFGFSMLTIALSICVGLLTANLF 832          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|302772280|ref|XP_002969558.1| (hypothetical protein SELMODRAFT_410327 [Selaginella moellendorffii] >gi|300163034|gb|EFJ29646.1| hypothetical protein SELMODRAFT_410327 [Selaginella moellendorffii])

HSP 1 Score: 108.997 bits (271), Expect = 2.045e-24
Identity = 68/188 (36.17%), Postives = 105/188 (55.85%), Query Frame = 0
Query:    2 LSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQP--VSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMYK--PR 185
            ++GT R++  L +AL LGFGL +G    +W          HC P  +S W      +  I   NIL+    +QW GM   A + ++   +A     + +S+STVLAAF VG+ G LY++ T    L  +LSGI L+VPGG+ V+G+ A    D+  G+AF   ++++A+SI+IGL  + +  +K  PR
Sbjct:  292 VTGTSRVIHGLFSALQLGFGLAIGDSFLWWSKAHD---KAHCTPPSISKWWNTLWLVGYIVASNILLNARLSQWPGMGLAATVGYV---VAYATDKLGTSASTVLAAFSVGITGTLYSHLTGELPLALVLSGILLLVPGGLGVEGIAAMFGRDVASGMAFVFDMLVVALSITIGLLIAKIPTWKTMPR 473          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|672825695|gb|KFH70586.1| (hypothetical protein MVEG_03436 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 108.612 bits (270), Expect = 5.580e-24
Identity = 66/197 (33.50%), Postives = 105/197 (53.30%), Query Frame = 0
Query:    1 MLSGTIRMMTALMNALLLGFGLDLGHRM--AFWENTSSWVSTEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINND--LNGGLAFGSGIVMIAVSISIGLFASSVLMYKPRMKISNAVF 193
            M+SG++RM  +L+  L LGFGL +G  +   F E     + T +C P +   +  LF      FNI +   P QW  M+  +++ F     A      S   +  ++AF VG+ GNLY   T+  A +PIL  I LIVPGGM V+     ++     + G +F   ++++A+ I++GLFAS++++Y P  K  NA+ 
Sbjct: 1074 MISGSVRMFYSLIYCLFLGFGLSIGSNLWDVFREPPPGDLKTGYCHPATEPWRWVLFPLLAIAFNIQLNAQPRQWPVMIVCSSVGFAVSEFAGMYWPHSLHIAAAVSAFVVGLLGNLYERLTHELAFVPILGAILLIVPGGMGVRSSLLLLDQSGHASQGTSFALQMIIVALGIAVGLFASTLVVY-PLGKKRNALL 1269          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|1001605680|gb|KXS09546.1| (DUF1212-domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 105.531 bits (262), Expect = 4.249e-23
Identity = 58/179 (32.40%), Postives = 102/179 (56.98%), Query Frame = 0
Query:    4 GTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQPVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMY 182
            G++R+  A++ ++++G+GL +G  +A W    S      CQPV +  ++ +FL     F IL++  P Q+  M  V A  FL     P      +S++  LAA  +G+ GNLY   T   A+ P+L+GI  +VPGG+SV+   A +N+D+  G    + ++ +++ I +GLF++ +L+Y
Sbjct:  316 GSVRLFHAMLISVMIGYGLSIGSNIASWA-VGSIEPVPACQPVDSRFQLLMFLPVCLAFYILLEAHPRQFPIMAVVTAAGFLVTTFLPA-EKFDTSANNALAALVIGLGGNLYGRLTGDAAVAPMLAGILFLVPGGISVRANMALLNDDIASGTRLVTMVLDVSIGILVGLFSAHLLIY 492          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|1032652422|gb|OAQ33696.1| (DUF1212-domain-containing protein [Mortierella elongata AG-77])

HSP 1 Score: 104.76 bits (260), Expect = 4.468e-23
Identity = 71/195 (36.41%), Postives = 105/195 (53.85%), Query Frame = 0
Query:    1 MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQP--------VSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWI-----NNDLNGGLAFGSGIVMIAVSISIGLFASSVLMY 182
            ++SG++RM  ALM A  LGFGL LG  +  W     +VS +H QP        V  W    +F +  T  NI+    P QWLGM  V A+ + T++            +  +AAF VG+AG  Y   T + + +P+LSG+ L+VPG + V+GV A+I       D + G  F   +V IAVSI++G+F S+++ Y
Sbjct:  240 IVSGSVRMFYALMYAFFLGFGLSLGAEL--W----IFVSRDHSQPSEDVCKHGVDHWWFFLIFPAVSTSINIVFNAHPCQWLGMTLVTAVGY-TVSY---FMTAGPQVTPAIAAFAVGIAGQAYGRITGNLSYVPLLSGVLLLVPGSVGVRGVLAFIGTDPTQGDPSQGFQFALSMVNIAVSITLGVFCSALVWY 424          
BLAST of EWM20795.1 vs. NCBI_GenBank
Match: gi|1183486866|gb|ORZ10590.1| (hypothetical protein BCR41DRAFT_308589 [Lobosporangium transversale])

HSP 1 Score: 104.375 bits (259), Expect = 9.381e-23
Identity = 62/183 (33.88%), Postives = 101/183 (55.19%), Query Frame = 0
Query:    1 MLSGTIRMMTALMNALLLGFGLDLGHRMAFWENTSSWVSTEHCQ-PVSAWAKIPLFLSTITCFNILMKGAPAQWLGMLCVAAISFLTINLAPTLHNMSSSSSTVLAAFFVGVAGNLYAYATNSPALIPILSGIFLIVPGGMSVKGVKAWINNDLNGGLAFGSGIVMIAVSISIGLFASSVLMY 182
            ++SG +RM  ALM A  LGFGL +G  +  W+  S   +   CQ P+  W    ++ +     NI+    P QWLGM  V A+ F+       L +     +  +AAF VG+ G LY   T   + +P+LSG+ L+VPG + V+G+ A I +D + G  F   ++ ++V+I++G+F S+++ Y
Sbjct:  317 IVSGAVRMFYALMYAFFLGFGLSIGAEL--WDYVS-LTTVSVCQNPIDRWWYFLIYPAVSASINIVFNAHPRQWLGMTLVTAVGFVVTLF---LKSSGPQITAAIAAFCVGITGKLYGRLTGQLSYVPLLSGVLLLVPGSVGVRGILAIIGSDPSQGFVFVLTMIHVSVAITLGVFCSALVWY 493          
The following BLAST results are available for this feature:
BLAST of EWM20795.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100686|gb|EWM20795.1|1.995e-135100.00membrane protein [Nannochloropsis gaditana][more]
gi|553184466|ref|XP_005854092.1|1.388e-10574.74pheromone-regulated membrane protein [Nannochlorop... [more]
gi|585100688|gb|EWM20797.1|2.533e-9974.74membrane protein [Nannochloropsis gaditana][more]
gi|553183310|ref|XP_005853873.1|6.201e-9974.74pheromone-regulated membrane protein [Nannochlorop... [more]
gi|470436808|ref|XP_004338930.1|8.681e-3135.33membrane protein, putative [Acanthamoeba castellan... [more]
gi|302772280|ref|XP_002969558.1|2.045e-2436.17hypothetical protein SELMODRAFT_410327 [Selaginell... [more]
gi|672825695|gb|KFH70586.1|5.580e-2433.50hypothetical protein MVEG_03436 [Mortierella verti... [more]
gi|1001605680|gb|KXS09546.1|4.249e-2332.40DUF1212-domain-containing protein [Gonapodya proli... [more]
gi|1032652422|gb|OAQ33696.1|4.468e-2336.41DUF1212-domain-containing protein [Mortierella elo... [more]
gi|1183486866|gb|ORZ10590.1|9.381e-2333.88hypothetical protein BCR41DRAFT_308589 [Lobosporan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9909rna9909Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications