rna990, rna990 (mRNA) Nannochloropsis gaditana

Overview
Namerna990
Unique Namerna990
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1663
Alignment locationCM002456.1:913124..914764 +

Link to JBrowse

Properties
Property NameValue
Producthistone-lysine n
Orig transcript idgnl|cribi|Naga_100299g10.1141.mrna
Orig protein idgnl|cribi|Naga_100299g10.1141
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:913124..914764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100299g10gene953Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna990rna990-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29679.1cds989Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna990 ID=rna990|Name=rna990|organism=Nannochloropsis gaditana|type=mRNA|length=1663bp
CCCGTCTGACTGCCACTTTGTCTCATTTTTAGCCCCATCTCCCGTTCATC
CTGTACATATTATATCCAGAGAAGGATGAGAAAGGTAAATTTTCTTGTTG
CAGCATGCGCAATGGTGCTGGGGGTGTCTCCAGCGTCAGCATTTATGCCT
TTCGCAGCTCGATCGTCTAGTGCAATTAAGATGAGCGCCTCTACGGGAGA
AAAGAGCAGCAGAAGTGAAAACATGCTGCCTGACAGCAGTGTTTCTAGGC
GGGATCTTGTGAAGACGACGTCTGTTGCAGCGGCTGCTCTCTCCGCCGCG
GGAGCTCTGGGAGGCTCGACACAGCCTGCAGCGGCGGCGTCGAATTTCGC
CTGGGAGCAGGTTACAGGCATCCCGATGGGCGCTACACTTTATGACGTGG
ACTTTGATTCGAAGGACCCAGAGCACGGGTGGATAGTAGGCTCGAAAGGC
ACCTTCCTGGAGACAACAGACGGGGGCAGGTCGTGGGTGCCCCGCTCCTT
CGTCGACCTGGACCCCGACGAGGAGGTGACCTACCGCTTTGAGCGCGTCA
GCTTCAACAACGGCGAGGGCTGGATCATCGGAAAGCCCCCTATTCTGCTG
CACACACAAGATTCGGGCAAGAGCTGGGAGCGCATTCCCCTGTCTCCCAA
GCTGCCCGGTGAGCCCTCAACGGTCTTCGCCACGGGCCCCAACTCGGCGG
AGATGACCACGTCGACGGGCGCCATATACAAAACTACCAATGCCGGGAGG
AATTGGAAGGCGCAAGTCAAGGAAACGATCGACGCCACGCTCAATCGCAT
CTCCTCTTCGGGAGTGAAAGGAGCCTCGTACTTCACCGGGTCGATCATCT
CGGTCGTCCGGGACCAGCTGTCTGGCGCCTACCTGGCCGTGTCCTCTCGC
GGAAACTTTTTCTTGACTTGGCTCCCGGGCCAAGACTTTTGGGTGCCACA
TAACAGAGGGACCTCCCGGCGTATTCAGAACATGGGCTTCGTCAAGGGGG
ACACGAGCAAAGGCGTATGGATGAGCTTGAACGGCGGCCTGTTGCAGATA
TGCGAGCCAAATCAGGACCTGTCATCGGACGAGGAGTTCAAGTTTGCGGA
TAGCAAGATCCGCTCGGGAGGATACGGCATTCTGGACGTGTCGTGGAAAG
ACGAGCAGGAGGTGTGGGCGGTGGGGGGGGGCGGCTCCATGTTCGTGTCC
AAGGACGGGGGCAAGACCTTCACTTTCAACAAGAGTGCGGACGAGATCCC
AGGTAACTTGTATAAGGTCAAGTTTTTCGGCGACAAAGGATTTGTCCTCG
GGTCAGAGGGGGTCCTCCTGCGGTACAAAGGTATTGCCTGAGTCGAGGAT
AGGTGGGGGAAAAGGAAATGGAGACGCAGCGGTGTTGGCGGGAGCTAGAA
ACGCGCCGGGCCCTTAAAAGACGGTGCGAGATGCTGTGCTTTCGATTGTT
TGTTTGTACGTTTGAGGCATAACAGAGTGACGACAGCTCAGCAATGTCGG
TCACAAAACTGCATCCACAAGTCTAATGTGGGAAAACAAAAAAGATGGGG
TATTAGCAGCTTGTACCCGCTCGTATTTTTCAAATTATAGTTATTCGGAA
CCACTCCATTTACAAGAAGTTTCGCTACCTCGATGTCAAATCTCGACACT
CCGAGTGGTAAGT
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protein sequence of rna990

>rna990-protein ID=rna990-protein|Name=rna990|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MYVMELESGYYLDARTKGNASRFINHSCAPNCELQKWNVKGFTRIGIMAI
TDISAGTPLSYDYQFATNEEGKFKCHCGAPTCRGTLAPQNQLTEDQTMEA
LRTGSRTDRKKLLQLCKKRERREQARQQQAAKESAARKNLTSQFLPGDSI
LEIRSGPPTRFLGLAKESKIFLVRNVIQGDDFVTRQELRRRRRLRRSVTE
ERESIICGLKRERTGHLA
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mRNA from alignment at CM002456.1:913124..914764+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna990 ID=rna990|Name=rna990|organism=Nannochloropsis gaditana|type=mRNA|length=1641bp|location=Sequence derived from alignment at CM002456.1:913124..914764+ (Nannochloropsis gaditana)
GGCTATCGATCGCTCTGGCCTCTTTGCTGCCCCCTCGACACCTTCCTGCA
GCTTTCCGCCTCCCAACCGTGCTTCTGGACGCCGTGAACAGCAAGCCGAA
GCCATACAGCCACATCTCCTGCCTCAAATACCAGTGTAAAGTGCCGGAGA
GGGAGCCCGGCCCGGAGTGTCAGTGCGAAGGCCAGTGCGGGGAGGGATGC
CTGAATCGGCTCTTGCATATCGAATGCgtcggagggggtggagggggagg
gacaaaagAGGGCGGCGAGGATGAGAACGGGGGTAGTGGACTCAaggggg
acaagaaggagaaacatCACAACTGCAACGTAGGACCGGCCTGTGGGAAT
CGTGCCTTTCGGAACAAGGAGTATATCACGCACCAAATAttccgggaggg
aggctgtgggTGGGGTTTGCGGACGTTGGAGAATGTGCGCAAGGGACAGT
TGGTCTTTGAGTACGTGGGGGAGGTTATCGACGACGACATCTTAGAGTTG
CGCCTCCAAGAACACGCGCGGGAGCGCCCCAACGACCACAACATGTACGT
GATGGAGCTTGAGAGCGGCTACTACCTGGATGCCCGGACCAAGGGGAACG
CCTCGCGCTTCATCAACCACTCCTGTGCGCCGAATTGCGAGCTACAGAAA
TGGAATGTGAAAGGCTTCACGCGGATCGGCATCATGGCCATAACCGATAT
ATCTGCGGGCACGCCCTTGTCCTACGATTACCAGTTTGCCACGAACGAAG
AGGGGAAATTTAAGTGCCACTGTGGGGCCCCAACCTGCCGCGGGACTCTT
GCACCTCAGAATCAGCTCACTGAAGATCAGACAATGGAAGCTCTTCGTAC
AGGCTCACGCACAGACCGCAAAAAGTTGCTCCAATTGTGCAAAAAGAGGG
AGCGTCGGGAGCAAGCCcgacagcagcaggcggCTAAAGAGAGTGCAGCG
AGGAAGAATTTGACATCACAGTTTTTGCCTGGAGACTCTATACTTGAGAT
CCGCTCTGGCCCGCCAACGCGATTCTTAGGACTCGCCAAGGTAAATAGTG
GTGGACTGTGTCTCGGAACAGACCTCTTACCAAGCTGTTGGATGACTGCT
TGTTGCACGATCGATTTCTGCACAGACACGCCTGACTTATTTTCCCTCTC
AATTTGATAGGAAAGTAAGATTTTTCTCGTCCGAAATGTCATCCAAGGCG
ATGATTTTGTGACGCGCCAGGAGCTTCGGAGGAGGCGTCGATTGCGACGT
AGTGTGACAGAGGAACGGGAGAGCATAATATGCGGAttgaaaagggaaag
gacggggCATTTAGCTTGATGGATCAAGATTAAGCATATCAAGGTGTTGT
ACGCAATGCGGACAAATTCTTTTATGGTCCATGACGTACCATggcgttcc
ccccccccccttgtccagGACCCGAGAGCTCTCCGGGAGCGAGCGGGAGA
CGAAAAAAGAACCACGAAAACTTACGTATCTTGTTTCGCTTTGGTAGACA
TTCAAATTAAAAGGTGAAATACAAAGTCTCTGCTCTCTTGATAGGACTCT
TGCGTTTGAAAAGCCCAACAAGCGTCAGGATGGAAAAAGCAATTAAAAAA
AAGATCACTTCGTTTAAAGAAAAACATACAGGAAAGCTCAT
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Coding sequence (CDS) from alignment at CM002456.1:913124..914764+

>rna990 ID=rna990|Name=rna990|organism=Nannochloropsis gaditana|type=CDS|length=1314bp|location=Sequence derived from alignment at CM002456.1:913124..914764+ (Nannochloropsis gaditana)
ATGTACGTGATGGAGCTTGAGAGCGGCTACTACCTGGATGCCCGGACCAA
GGGGAACGCCTCGCGCTTCATCAACCACTCCTGTGCGCCGAATTGCGAGC
TACAGAAATGGAATGTGAAAGGCTTCACGCGGATCGGCATCATGGCCATA
ACCGATATATCTGCGGGCACGCCCTTGTCCTACGATTACCAGTTTGCCAC
GAACGAAGAGGGGAAATTTAAGTGCCACTGTGGGGCCCCAACCTGCCGCG
GGACTCTTGCACCTCAGAATCAGCTCACTGAAGATCAGACAATGGAAGCT
CTTCGTACAGGCTCACGCACAGACCGCAAAAAGTTGCTCCAATTGTGCAA
AAAGAGGGAGCGTCGGGAGCAAGCCcgacagcagcaggcggCTAAAGAGA
GTGCAGCGAGGAAGAATTTGACATCACAGTTTTTGCCTGGAGACTCTATA
CTTGAGATCCGCTCTGGCCCGCCAACGCGATTCTTAGGACTCGCCAAGGA
AAGTAAGATTTTTCTCGTCCGAAATGTCATCCAAGGCGATGATTTTGTGA
CGCGCCAGGAGCTTCGGAGGAGGCGTCGATTGCGACGTAGTGTGACAGAG
GAACGGGAGAGCATAATATGCGGAttgaaaagggaaaggacggggCATTT
AGCTTGAATGTACGTGATGGAGCTTGAGAGCGGCTACTACCTGGATGCCC
GGACCAAGGGGAACGCCTCGCGCTTCATCAACCACTCCTGTGCGCCGAAT
TGCGAGCTACAGAAATGGAATGTGAAAGGCTTCACGCGGATCGGCATCAT
GGCCATAACCGATATATCTGCGGGCACGCCCTTGTCCTACGATTACCAGT
TTGCCACGAACGAAGAGGGGAAATTTAAGTGCCACTGTGGGGCCCCAACC
TGCCGCGGGACTCTTGCACCTCAGAATCAGCTCACTGAAGATCAGACAAT
GGAAGCTCTTCGTACAGGCTCACGCACAGACCGCAAAAAGTTGCTCCAAT
TGTGCAAAAAGAGGGAGCGTCGGGAGCAAGCCcgacagcagcaggcggCT
AAAGAGAGTGCAGCGAGGAAGAATTTGACATCACAGTTTTTGCCTGGAGA
CTCTATACTTGAGATCCGCTCTGGCCCGCCAACGCGATTCTTAGGACTCG
CCAAGGAAAGTAAGATTTTTCTCGTCCGAAATGTCATCCAAGGCGATGAT
TTTGTGACGCGCCAGGAGCTTCGGAGGAGGCGTCGATTGCGACGTAGTGT
GACAGAGGAACGGGAGAGCATAATATGCGGAttgaaaagggaaaggacgg
ggCATTTAGCTTGA
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Synonyms
Publications