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Properties
| Property Name | Value |
|---|
| Product | protein of unknown function DUF4033 |
| Orig transcript id | gnl|cribi|Naga_100033g24.8409.mrna |
| Orig protein id | gnl|cribi|Naga_100033g24.8409 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:266835..268976 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna99 ID=rna99|Name=rna99|organism=Nannochloropsis gaditana|type=mRNA|length=3696bp
GGAGTTTCGTCGTCTGTCTGGACACATATCCCACGCCCGAGAATTCCCAC
GCTGTCTCCCAGGACTGTGGATGCCTCTCTGCACCTGACAGTGTTGAAAA
TGAGGCTGTCTGGGAAATCGATTTCCTTGGTATGCACCACATGTGGCCGT
TTTTCCTCGGGATGATTTAACTTGATGAGGGTAAGGGGGTGCTCATCGTG
CATAAGCCTGTCTCACTTCGCTCATACCCCTACCTTATTCTACGTCGGGC
ATTCTGGATATCACAGGATTTTCCTTCACGGTACTGGGACACACCTACAA
ACTGGGCTGATCGCCTTGCCTCGTCCGTGGGCGTTTCCTGCTTTCGAGTC
TCTAGCATCTCCTGCGCATCATGGCCCCATCGGGCCTTCCCGCCGTCTCA
TCCATCGAGACATCATGCACGGTGCTCTTCCATACCGAAAAGGCATCTGC
AGTGCAACAGGAAGAAATCATGAGGGATTTGGAGAATCCGGACGTGAAGT
ACAAAATTCAGGCCTTGAAGCAGACCATCATGCTGCTCCTGTCAGGAGAG
AATCTGCCACGCGTTTTGATGAGCGTGATACGGTTCTGCAGTAGCACAAA
TGATCACTTGCTCAAGAAGCTTCTGATGCTTTACTGGGAAGTGGTTCCCA
AGTACGACGGAACGTCCAAAAAGCTCTTGAGTGAGATGATTCTCGTGTGC
AATGCCCTCCGGAACGACCTCAACCACCCCAACGAGTACGTCAGAGGCTC
CATGCTCCGTTTTCTCTGCAAGTTGCGCGAGCCCGACCTTTTGGAGCCCC
TCATCCCCTCCATCAAAGCCTGTCTGGAGCACCGTCATTCCTACGTGCGG
AAGAACGCGGCCTTGGCCATTCTGAACATCCATCGCCACGTGTCCTCCGA
CCTTGTCCCAGACGCCCCGGAACTCATGCAACAATTCATTCAGACGGAGA
CCGACAGCGGCGCACGTCGCAACGCTTTTCTTTTCTTGTGCTCTGAGGCT
GAGCTCGTGGCCATCCAATTCTTGACGGAGCACTTGGACGAGGTTCCCAG
GTACGGAGACGGTTTTGCCCTCCTTGTCTTGGAGTTGACCCGAAAAGTTT
GCCGAAAAGATCCGGCGCAGAAAGCCCGATTCGTGCGGGCGCTCTTCAAC
CTGCTGCAGTCGGACAGCGCCGCTGTCTCGTACGAAGCGGCTTGGACGCT
GGTTTCCCTTTCTTCCGCCCCGACCGCCGTTCGGGCCGCTGCCAGCACGT
ACGCTCAGCTTCTCAACAGTCAAAGCGACCACAATGTGAAGCTCATCGTG
CTGGAGCGTCTCGCCAGCCTCAAACAAGGACACACTCGGGTTGTCCAGGA
GAATTTGATGGACATCTTGCGCGCCTTGGGGTCGCCGAACCTGGATATAT
GCCGGAAGACCCTGGAGGTGGCCATGGACCTCGTCAGCCCCCGCAACATC
GAAGAAGTGGTGGCAGTCTTGAAACGCGAAGTCCTCCGCACACAGGAGGG
GGAACAGGAGAAAGCCACCGTGTACCGCAGCATGCTGATTCAAGCCATCC
ATACCTGCGCCGCCCGCTTTCCAGAAGTGGCCGATGCCGTCGTCCACGTG
CTCATGGACTTCCTCTCGGGAGACGGGGCCCTGGACGTGATCGTCTTTGT
CCGGAGCATTATCGAGCAATACCCGGCCTTCCGCCCCTCCATCCTGAACA
AGCTCTTGCAGTCCTTCGCCTACATCCAAGGGAACACCGTGCTGGGGGTC
GCGGTCTGGATTTTGGGGGAGTATGCGATGGAGCCCACCCTCCGAAAGGA
AGCCTTTGACTGCCTGTTGGCCAACGCCGGGCAACCCCCTTACCTGCCAA
AATCAACGCCTGCCATGAAAGAGGGTGTGGGGGAGGGAGGGAGGGAAGGA
GGCAATGCGCCAGGGCAGCAGTTGGTGAGCAAGAGTGTGGTTTTGGCGGA
TGGAACCTACGCGACACAAGTGGCCATGGTCCCTGTTCCTGGAGGGGCGG
GGAGTGGGAAGCTGGGCGCCGAGGACAAGTCGTCGCCTGCCTTCCGTCGA
GCGCTCTTGGAGGGGGACGTGTTTCTGGGGGGGTTGCTGGTGTCCTCTTT
GACGAAATTGACGGTGCAGGCATTGGAGACGGCGGGGCCGTTAGACCCAG
AATGCAAGGAGATGCAAGCCAAGACCTTGCTCGTGGCGTGCGGGGTGGGG
AGGATGGCGGAGGTGAAAGCCCAGGGGAATGTAGGCGCTTACGCGGATGT
GTTGGAGCGGATCACCGTCTGTGCCCGTGTCTTGCTGGACCCCGACTCCC
TGTCCCTGGTGAAAGATACGCTCCTGACCAAGTGCAAGATGAGCTATGCT
GCATTCTTGAAATTCAAACAGGAAGAAGCGGCCAAGTCGGACAAGGCTCG
GCAGGGGGAAAAGGAAGGGGGATTGAGTGCCTTACCCGACGCGCTCATCA
ACTTCAGGCAACTAAGGCATTTCGGAGTGCAAACGGGAGACTTCGATTTA
TATGACGGAGAGGACATCCAACGGGCCACGGGCGCCGGGGCGGTGAAAGA
CGAGGTGGGCGATTGGAGCAAGCGGCTGGCGCACGTGTATCAATTGAGCG
GTTTAGCAGACCCGGTGTACGCGGAGGCCTACGTAACTGTGCACGACTAC
GACATCGTCTTAGAGATCCTGGTCATCAACCGGACCAAGGCGACATTAAC
GAATCTGACGGTGGAGCTCGCGACCATGGGGGATTTGAAGCTGATCGAGC
GGCCCCAGTCTCACACCATCGGCCCGCAGGACCAGCGGATCATCCGGGCG
AACATCAAGGTCTCGAGCACGGAGACGGGCCATATCTTTGGGACGATCGT
CTACGAGAACAGCAGCACGGCCGAGAAGGGTACTGTGAATCTGAACGACA
TTCAGATGGACATCATGGATTACATCCGCCCTGCCTCCTGTTCAGACGAG
GCCTTCCGGGCCATGTGGGCGGAGTTTGAGTGGGAGAATAAGGTTGCTAT
CAACACCACCTTTTTGGATTTGCAAGCTTTCCTCACGCACGTGGTGAGCA
GCACGAACATGGAATGCCTGACACCAACCTCCTCCCTGTCCGGCGAGTCT
GCCTTCTTGGCGGCGAATTTGTACGCGAAGAGCGTTTTCGGGGAAGATGC
TTTGGTCAACTTGTCCGTGGAGAAGAAGGATGACGCGGACGGTCGTCTGA
GTGGTTACGTGAGGATCCGCAGCAAAACTCAAGGAATTGCCTTGTCCTTG
GGGGATCGTATCACGGCGATCCAGCGGGTGGGCGACGTGCAGGAGGAAAT
TGCGGCGTAGGAGCCATGCCCGCGGGAAACGGGGGATATGAACGGGGGGT
TGGAAGTACGTGCGAAGGGCGGAGAAAGGGAAGCGCTAATGTGGGGAGGA
GAGGGGAGGGCTGGCTTGAGGAAGACAGGAACGAAGACGCGCGTTTCGAA
AATGTGGCGAGGAGAGAGACAGAAAGATTTGGAGGGAATTGAGGTAACAA
ATTGAGGAATGCCGTCCCAGCCATTTGGATGACGGAGATACGAGCAATAT
GAAGACTTTTGTTAGCACGGAGCACATGCCCGCTTTGTCTTCGACGCGTT
TTCTGACAAGCGACGTTTCCCACGGTCGAAGATTTCATTTCTTATTCGTA
TCCGTAAGAACACTTTGCCTAAAAATACAACCGTTCTCTGATCTGA back to topprotein sequence of rna99 >rna99-protein ID=rna99-protein|Name=rna99|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MERAVRVRGRDFPSSSLCVVSATQRASASSTSHNGGREVIKIEIPAAWSK
PRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFAS
RPPPNFRRFLFGFGGKDSQTNKNSGNSSLKPKPFAPERMVKYNDDIFAKI
WIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVL
RSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEML
NPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMP
VTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKECSTAVTSKRVCPVV
TSAADRK back to topmRNA from alignment at CM002455.1:266835..268976+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna99 ID=rna99|Name=rna99|organism=Nannochloropsis gaditana|type=mRNA|length=2142bp|location=Sequence derived from alignment at CM002455.1:266835..268976+ (Nannochloropsis gaditana)
CATTTTCAACACTGTCAGGTGCAGAGAGGCATCCACAGTCCTGGGAGACA
GCGTGGGAATTCTCGGGCGTGGGATATGTGTCCAGACAGACGACGAAACT
CCTCGCTGAGTTCCTTTGGAGAGCGCCCATAGACCCCCCCCCGAGAGGTC
TTGCGTGGCGATCCAGGCACATTCACACGTCCATCGTCCACTCACCCGTG
ACCAGGGCATTCACAGGCAAAATGGAAAGAGCCGTGCGGGTCCGAGGCCG
GGACTTTCCTTCCAGCAGCCTTTGTGTGGTCAGCGCAACACAGAGAGCGT
CAGCTTCCTCAACAAGCCACAACGGGGGTCGGGAGGTGATCAAGATCGAG
ATACCAGCAGCTTGGTCAAAACCACGGAGTACTTACAGAAGGAGGCACTT
GCGGCTGATTGCCACCCATTTTTTCGTCTTAATTGTCTTGTGTGTCATCA
TAGGGCGTGCGTGTGCTTTTGCACCATTACATACCAGACGTATTGCCCTG
CCTACGTCCCCTTTTGcgtctcgtccacctcccaaCTTCCGCAGATTTCT
TTTTGGTTTTGGCGGTAAAGACAGTCAAACGAATAAAAATAGTGGAAACT
CATCTTTGAAGCCAAAACCTTTTGCCCCAGAGCGCATGGTTAAATACAAC
GACGACATATTTGCGAAGATCTGGATATTTTTGTTCACCGGAAAAATTGC
GGCTGTAGTCGGtgcaccctctccccgtaACTTTATCCCGTACGAGGAAT
ACGTTCGTCTCTCTCGGTTACTGTTAAGAGGGGGCTCGACCAAGGCGAAG
TCTGCCGTTCTCTCTGTCCTTcgctccatcgccttcccggGCTTTTCCTC
TATTTTTCGGGCCTTGTTTCCAGGGTCGTCGCGGCTTGCTTGTGAATTTA
ATGCGCGCGTTACGCCAATCTTTTTCAGCTGGCTGGTTGGACCAGCAAAG
GTAGAAACTTCAGAAATGCTGAACCCGGTCACGTACGTGATAGAGCACGT
AgagtggtggtgatgggaggaagggaagaagacggtgtACGATCGCGATA
TCATTCCGGCCGTTCGGTTCAATAAGAAGCTTAATATTGAATCCTACAAC
ACGTATCTTTACGTTTCCCACCCATATCTTTCCACGCACACACGCACAAT
GTACCTGTGGTACCGTAACAGCGGCGCGCGGGAGCTATGGTCTAACAGCG
TCAAGATAGAGCGGTGCAGGTATCTAGAGAGTGTGCAATGCAAAGGCGCG
TGCGTCAGCATCTGCAAGTTACCCACGCAAACTTTCTTCACGGAGGACCT
GGGCATGCCCGTGACGATGACGCCCAATTTTGAGGACTTGAGGTAGGCGA
TACAGGACAAGAACGAGGTCATACAAGGTCATGGGCAGTGGAGGGTGAGG
CATAGCACAAATTGCAATTCAAACTTGAAGCATTGTGAGTTCTTAATTTA
TCTGTCTTAaatctttttccttccaagcTGTACGATGACATTCGGGACTG
CTCCGTTGCCTATTGCGTCAGATCCGGTTTGCTCGGAAGGGTGCTACAAA
GAGTGCTCCACTGCAGTGACGTCGAAACGAGTTTGTCCAGTTGTGACGTC
AGCAGCAGATCGAAAATAGGAAAGAAAGTGATGGAGTTGATATTCAGAGG
GTACGTGTCTTCTAAAGCACGcgcaggtggaagggagcTGATAAGATCTT
ACGTAAGGTGTTGAGAGCAGCACACGTCCTGTCAGTTGAGATTCAGTATG
TGTACTGGTGGAGGATATTCCTTGCGCTGCTTACTGTGGTGTCCTTTTGC
CCCTCATTTTCCGATTCTGGAGGATGAGCATTCCGTGGGCTTAAGGGATA
AGGAATCTTGCTGATGACCTCAGCCTCCAATAAGAAATTTGATAGGGCAT
AGCAGAACAACTTGTCATTCATAGGTATGAGTTTGGCTCGCTACAGCCCG
TGCCCACAGTTCAAACTTTGTCATGTGATCCGCCTCACTAACATGTAtca
caacctcctccctccttcctgtcacaTTTTTTAGTCGTACCACATGATTG
TCAAGACGATCCCTGGGACTGTTATTATTTAAACGTACAATAGATAAAGA
GTCAACGAAAGAAATCTAGAAGAATATACGCGAAAATTTTGG back to topCoding sequence (CDS) from alignment at CM002455.1:266835..268976+ >rna99 ID=rna99|Name=rna99|organism=Nannochloropsis gaditana|type=CDS|length=3222bp|location=Sequence derived from alignment at CM002455.1:266835..268976+ (Nannochloropsis gaditana)
ATGGAAAGAGCCGTGCGGGTCCGAGGCCGGGACTTTCCTTCCAGCAGCCT
TTGTGTGGTCAGCGCAACACAGAGAGCGTCAGCTTCCTCAACAAGCCACA
ACGGGGGTCGGGAGGTGATCAAGATCGAGATACCAGCAGCTTGGTCAAAA
CCACGGAGTACTTACAGAAGGAGGCACTTGCGGCTGATTGCCACCCATTT
TTTCGTCTTAATTGTCTTGTGTGTCATCATAGGGCGTGCGTGTGCTTTTG
CACCATTACATACCAGACGTATTGCCCTGCCTACGTCCCCTTTTGcgtct
cgtccacctcccaaCTTCCGCAGATTTCTTTTTGGTTTTGGCGGTAAAGA
CAGTCAAACGAATAAAAATAGTGGAAACTCATCTTTGAAGCCAAAACCTT
TTGCCCCAGAGCGCATGGTTAAATACAACGACGACATATTTGCGAAGATC
TGGATATTTTTGTTCACCGGAAAAATTGCGGCTGTAGTCGGtgcaccctc
tccccgtaACTTTATCCCGTACGAGGAATACGTTCGTCTCTCTCGGTTAC
TGTTAAGAGGGGGCTCGACCAAGGCGAAGTCTGCCGTTCTCTCTGTCCTT
cgctccatcgccttcccggGCTTTTCCTCTATTTTTCGGGCCTTGTTTCC
AGGGTCGTCGCGGCTTGCTTGTGAATTTAATGCGCGCGTTACGCCAATCT
TTTTCAGCTGGCTGGTTGGACCAGCAAAGGTAGAAACTTCAGAAATGCTG
AACCCGGTCACCGGCGCGCGGGAGCTATGGTCTAACAGCGTCAAGATAGA
GCGGTGCAGGTATCTAGAGAGTGTGCAATGCAAAGGCGCGTGCGTCAGCA
TCTGCAAGTTACCCACGCAAACTTTCTTCACGGAGGACCTGGGCATGCCC
GTGACGATGACGCCCAATTTTGAGGACTTGAGcTGTACGATGACATTCGG
GACTGCTCCGTTGCCTATTGCGTCAGATCCGGTTTGCTCGGAAGGGTGCT
ACAAAGAGTGCTCCACTGCAGTGACGTCGAAACGAGTTTGTCCAGTTGTG
ACGTCAGCAGCAGATCGAAAATAGATGGAAAGAGCCGTGCGGGTCCGAGG
CCGGGACTTTCCTTCCAGCAGCCTTTGTGTGGTCAGCGCAACACAGAGAG
CGTCAGCTTCCTCAACAAGCCACAACGGGGGTCGGGAGGTGATCAAGATC
GAGATACCAGCAGCTTGGTCAAAACCACGGAGTACTTACAGAAGGAGGCA
CTTGCGGCTGATTGCCACCCATTTTTTCGTCTTAATTGTCTTGTGTGTCA
TCATAGGGCGTGCGTGTGCTTTTGCACCATTACATACCAGACGTATTGCC
CTGCCTACGTCCCCTTTTGcgtctcgtccacctcccaaCTTCCGCAGATT
TCTTTTTGGTTTTGGCGGTAAAGACAGTCAAACGAATAAAAATAGTGGAA
ACTCATCTTTGAAGCCAAAACCTTTTGCCCCAGAGCGCATGGTTAAATAC
AACGACGACATATTTGCGAAGATCTGGATATTTTTGTTCACCGGAAAAAT
TGCGGCTGTAGTCGGtgcaccctctccccgtaACTTTATCCCGTACGAGG
AATACGTTCGTCTCTCTCGGTTACTGTTAAGAGGGGGCTCGACCAAGGCG
AAGTCTGCCGTTCTCTCTGTCCTTcgctccatcgccttcccggGCTTTTC
CTCTATTTTTCGGGCCTTGTTTCCAGGGTCGTCGCGGCTTGCTTGTGAAT
TTAATGCGCGCGTTACGCCAATCTTTTTCAGCTGGCTGGTTGGACCAGCA
AAGGTAGAAACTTCAGAAATGCTGAACCCGGTCACCGGCGCGCGGGAGCT
ATGGTCTAACAGCGTCAAGATAGAGCGGTGCAGGTATCTAGAGAGTGTGC
AATGCAAAGGCGCGTGCGTCAGCATCTGCAAGTTACCCACGCAAACTTTC
TTCACGGAGGACCTGGGCATGCCCGTGACGATGACGCCCAATTTTGAGGA
CTTGAGcTGTACGATGACATTCGGGACTGCTCCGTTGCCTATTGCGTCAG
ATCCGGTTTGCTCGGAAGGGTGCTACAAAGAGTGCTCCACTGCAGTGACG
TCGAAACGAGTTTGTCCAGTTGTGACGTCAGCAGCAGATCGAAAATAGAT
GGAAAGAGCCGTGCGGGTCCGAGGCCGGGACTTTCCTTCCAGCAGCCTTT
GTGTGGTCAGCGCAACACAGAGAGCGTCAGCTTCCTCAACAAGCCACAAC
GGGGGTCGGGAGGTGATCAAGATCGAGATACCAGCAGCTTGGTCAAAACC
ACGGAGTACTTACAGAAGGAGGCACTTGCGGCTGATTGCCACCCATTTTT
TCGTCTTAATTGTCTTGTGTGTCATCATAGGGCGTGCGTGTGCTTTTGCA
CCATTACATACCAGACGTATTGCCCTGCCTACGTCCCCTTTTGcgtctcg
tccacctcccaaCTTCCGCAGATTTCTTTTTGGTTTTGGCGGTAAAGACA
GTCAAACGAATAAAAATAGTGGAAACTCATCTTTGAAGCCAAAACCTTTT
GCCCCAGAGCGCATGGTTAAATACAACGACGACATATTTGCGAAGATCTG
GATATTTTTGTTCACCGGAAAAATTGCGGCTGTAGTCGGtgcaccctctc
cccgtaACTTTATCCCGTACGAGGAATACGTTCGTCTCTCTCGGTTACTG
TTAAGAGGGGGCTCGACCAAGGCGAAGTCTGCCGTTCTCTCTGTCCTTcg
ctccatcgccttcccggGCTTTTCCTCTATTTTTCGGGCCTTGTTTCCAG
GGTCGTCGCGGCTTGCTTGTGAATTTAATGCGCGCGTTACGCCAATCTTT
TTCAGCTGGCTGGTTGGACCAGCAAAGGTAGAAACTTCAGAAATGCTGAA
CCCGGTCACCGGCGCGCGGGAGCTATGGTCTAACAGCGTCAAGATAGAGC
GGTGCAGGTATCTAGAGAGTGTGCAATGCAAAGGCGCGTGCGTCAGCATC
TGCAAGTTACCCACGCAAACTTTCTTCACGGAGGACCTGGGCATGCCCGT
GACGATGACGCCCAATTTTGAGGACTTGAGcTGTACGATGACATTCGGGA
CTGCTCCGTTGCCTATTGCGTCAGATCCGGTTTGCTCGGAAGGGTGCTAC
AAAGAGTGCTCCACTGCAGTGACGTCGAAACGAGTTTGTCCAGTTGTGAC
GTCAGCAGCAGATCGAAAATAG back to top
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