EWM30570.1, cds99 (CDS) Nannochloropsis gaditana

Overview
NameEWM30570.1
Unique Namecds99
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:267056..267816 +
Alignment locationCM002455.1:268006..268176 +
Alignment locationCM002455.1:268312..268453 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30570.1
Productprotein of unknown function DUF4033
Orig transcript idgnl|cribi|Naga_100033g24.8409.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:267056..267816 +
CM002455.1supercontigCM002455.1:268006..268176 +
CM002455.1supercontigCM002455.1:268312..268453 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR025114DUF4033
Homology
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|585113237|gb|EWM30570.1| (protein of unknown function DUF4033 [Nannochloropsis gaditana] >gi|585113238|gb|EWM30571.1| protein of unknown function DUF4033 [Nannochloropsis gaditana])

HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0
Query:    1 MERAVRVRGRDFPSSSLCVVSATQRASASSTSHNGGREVIKIEIPAAWSKPRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFASRPPPNFRRFLFGFGGKDSQTNKNSGNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKECSTAVTSKRVCPVVTSAADRK 357
            MERAVRVRGRDFPSSSLCVVSATQRASASSTSHNGGREVIKIEIPAAWSKPRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFASRPPPNFRRFLFGFGGKDSQTNKNSGNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKECSTAVTSKRVCPVVTSAADRK
Sbjct:    1 MERAVRVRGRDFPSSSLCVVSATQRASASSTSHNGGREVIKIEIPAAWSKPRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFASRPPPNFRRFLFGFGGKDSQTNKNSGNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKECSTAVTSKRVCPVVTSAADRK 357          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|553181359|ref|XP_005853551.1| (hypothetical protein NGA_0357502 [Nannochloropsis gaditana CCMP526] >gi|422295511|gb|EKU22810.1| hypothetical protein NGA_0357502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 296/313 (94.57%), Postives = 296/313 (94.57%), Query Frame = 0
Query:    1 MERAVRVRGRDFPSSSLCVVSATQRASASSTSHNGGREVIKIEIPAAWSKPRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFASRPPPNFRRFLFGFGGKDSQTNKNSGNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCT 313
            MERAVRVRGRDFPSSSLCVVSATQRASASSTSHNGGREVIKIEIPAAWSKPRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFASRPPPNFRRFLFGFGGKDSQTNKNSGNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVT                YLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLS T
Sbjct:    1 MERAVRVRGRDFPSSSLCVVSATQRASASSTSHNGGREVIKIEIPAAWSKPRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFASRPPPNFRRFLFGFGGKDSQTNKNSGNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVT----------------YLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSRT 297          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|778674788|ref|XP_011650294.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus] >gi|700200533|gb|KGN55666.1| hypothetical protein Csa_3G002850 [Cucumis sativus])

HSP 1 Score: 171.785 bits (434), Expect = 6.769e-48
Identity = 95/235 (40.43%), Postives = 136/235 (57.87%), Query Frame = 0
Query:  125 GNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRN---------FIPYEEYVRLSRLLLRGGSTKAKSAVL-SVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKE-CSTAVTSKRVCP 348
              +S +P P    +  KYND  F K+++ LF  K+     A   R             YE +V +S+ +++G +   +  V+  VL S+  PG  + FR LFP  ++ ACEFNA +T  FF WLVGP++V   E    V G ++   + V I++CRYLE+  C G CV++CK+PTQ FFT + G+P+TM PNFED+SC M +G  P P   DPV  + CYK+ CS A+TS  +CP
Sbjct:   34 AEASGEPAPLG--QKTKYNDGPFEKVFMTLFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSMLPPGAPAQFRKLFP-PTKWACEFNALITVPFFQWLVGPSEVVEVE----VNGIKQ--RSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMAITSAPLCP 259          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|168000160|ref|XP_001752784.1| (predicted protein [Physcomitrella patens] >gi|162695947|gb|EDQ82288.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 172.17 bits (435), Expect = 7.132e-48
Identity = 97/231 (41.99%), Postives = 138/231 (59.74%), Query Frame = 0
Query:  128 SLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVL-SVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCY-KECSTAVTSKRVCPVVTSAADR 356
            S KP PF   ++ +YND+I  K +I LF  K+ A +G  S      YE +V +S+ +++G +   + AV+  VL S+  PG  + FR LFP  ++ + EFNA VT  FF WLVGPA++   E    V G +++  + VKI +CRYLE+  C G CV++CK+PTQ FFT + G+P+TMTPNFED+SC M +G +P PI  DP   + C+   CS A      CP +   A  
Sbjct:   44 SGKPAPFG--QITRYNDNILDKAFIALFRRKMEANLGKTS--KMQGYEGFVDVSKKIMQGRTAVEQRAVVRDVLLSLLPPGAPAQFRKLFP-PTKWSAEFNAAVTVPFFQWLVGPAELMEIE----VNGVKQM--SGVKITKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMTPNFEDMSCEMFYGQSPPPIEEDPALKQPCFLNMCSIAPPQSTACPKLQQVAQE 263          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|545366773|ref|XP_005648267.1| (hypothetical protein COCSUDRAFT_33175 [Coccomyxa subellipsoidea C-169] >gi|384250243|gb|EIE23723.1| hypothetical protein COCSUDRAFT_33175 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 169.088 bits (427), Expect = 6.284e-47
Identity = 93/231 (40.26%), Postives = 133/231 (57.58%), Query Frame = 0
Query:  130 KPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIP-YEEYVRLSRLLLRG-GSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCY-KECSTAVTSKRVCPVVTSAADRK 357
            K  PFA +    YND    K  +  F G+++  +G    R ++P YE +V LSR +++G  S + + AV  VL S+  P  S  FR  FP  S+ + E NA +T + F WLVGP  +ET E+     G ++ W + V+I++CRYLE   C G CV++CK+PT+ FFT   G+P+TM PNFEDLSC M FG    PI  DP+ ++ C+  EC+ A      CP + +   RK
Sbjct:   17 KVDPFAQKET--YNDSPLDKFMVSYFAGRMSQQLGG---REYVPGYEGFVELSREMMKGRNSKQQQQAVSGVLGSLMPPQASERFRKWFP-VSKWSAETNALITVLGFKWLVGP--LETKEVEVEFEGEKQKWKSGVQIKKCRYLEQSGCIGMCVNMCKIPTEDFFTNQFGLPLTMNPNFEDLSCEMIFGQKAPPIEQDPLYNQPCFAHECTLAEKEPVPCPKIDTDRHRK 239          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|659095394|ref|XP_008448557.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 169.474 bits (428), Expect = 6.729e-47
Identity = 94/234 (40.17%), Postives = 135/234 (57.69%), Query Frame = 0
Query:  125 GNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRN--------FIPYEEYVRLSRLLLRGGSTKAKSAVL-SVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKE-CSTAVTSKRVCP 348
              +S +P P    +  KYND  F K+++ LF  K+     A   R            YE +V +S+ +++G +   +  V+  VL S+  PG  + FR LFP  ++ ACEFNA +T  FF WLVGP++V   E    V G ++   + V I++CRYLE+  C G CV++CK+PTQ FFT + G+P+TM PNFED+SC M +G  P P   DPV  + CYK+ CS + TS  +CP
Sbjct:   35 AEASGEPAPLG--QKTKYNDGPFEKVFMTLFARKMEKFANAKEQRKKKEGFWDFLYDYERFVDVSKRVMQGKNRMQQQLVVREVLLSMLPPGAPAQFRKLFP-PTKWACEFNASITVPFFQWLVGPSEVVEVE----VNGIKQ--RSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNTSAPLCP 259          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|385763996|gb|AFI78801.1| (putative D27 family protein, partial [Spirogyra pratensis])

HSP 1 Score: 164.466 bits (415), Expect = 2.812e-45
Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 0
Query:  130 KPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAK-SAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKE-CSTAVTSKRVCP 348
            KP P    +  KYND IF + ++ LF  K+A V G  S  +   YE +V  SR +++G + + +  AV  VL S+  P   + FR +FP  ++ + E NA +T  FF WLVGPA+++  E    V G +++  + V+I++CRYLE   C G CV++CKLPTQ FFT + G+P+TM PNFED+SC M FG    P+  DP   + CY   C+ A    + CP
Sbjct:   20 KPAPMG--QKTKYNDSIFDRAFMALFAAKMATVTGKRS--DIGGYEGFVDTSRKVMQGRNAQGQREAVAKVLLSLLPPNAPAQFRKIFP-PTKWSAEMNAAITVPFFQWLVGPAELKEVE----VNGVKQM--SGVQIKKCRYLEYSGCVGMCVNMCKLPTQDFFTNEFGLPLTMNPNFEDMSCEMIFGQLSQPLEEDPALKQPCYAMLCNVATPENQSCP 229          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|1194462542|gb|OUC16033.1| (hypothetical protein B0A82_03970 [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 161.77 bits (408), Expect = 1.444e-44
Identity = 84/209 (40.19%), Postives = 126/209 (60.29%), Query Frame = 0
Query:  142 YNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKECSTAVTSKRVCPVV 350
            Y+D+ F +++I++F+ KIA  +G  SP  +  YE +V LS+ +++G + + + A++ V+     P         F     L CE NA      F WLVGP +V + E+ +P TG  ++  + V I++CRYLE  +C G CV++CK+PTQ FFT+D G+PVT+TPNFED SC M FG  P P+ ++    + C  +C TA TS  VCP V
Sbjct:    8 YHDNWFDRLFIWIFSRKIAKALGQDSP--YPGYEGFVDLSQKIMQGRNAEEQQALVGVVLRSLIPAPVLWTIRTFSRPIPLVCELNAWFATQLFEWLVGPCEVRSVEVTSP-TGKTQMQRSGVHIQKCRYLEQSRCVGMCVNMCKVPTQEFFTQDFGIPVTLTPNFEDFSCEMVFGQIPPPLETEQASQQPCLNQCVTASTSI-VCPKV 212          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|1191680348|gb|OTG32311.1| (hypothetical protein HannXRQ_Chr03g0085241 [Helianthus annuus])

HSP 1 Score: 163.31 bits (412), Expect = 1.787e-44
Identity = 91/231 (39.39%), Postives = 130/231 (56.28%), Query Frame = 0
Query:  128 SLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRN--------FIPYEEYVRLSRLLLRG-GSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKE-CSTAVTSKRVCP 348
            S +P P    +  KYND +F K+++ LF  K+    G P               YE +V +SR +++G    + +  V  VL S+  PG    FR LFP  ++ A EFNA +T  FF WLVGP++V   E    V G ++   + V I++CRYLE+  C G CV++CK+PTQ FFT + G+P+TM PNFED+SC M +G  P P   DPV  + C+ + CS A  +  +CP
Sbjct:   42 SGQPAPMG--QKTKYNDGVFEKVFMSLFARKMEKFSGKPDKETEGKKKGLFDYDYESFVDVSRRVMQGRNRIQQQEVVREVLLSMLPPGAPEQFRKLFP-PTKWAAEFNAALTVPFFHWLVGPSEVIEVE----VNGVKQ--RSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMIPNFEDMSCEMVYGQPPPPFEEDPVAKQPCFADVCSVANPNASICP 263          
BLAST of EWM30570.1 vs. NCBI_GenBank
Match: gi|1009156626|ref|XP_015896339.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 162.54 bits (410), Expect = 2.073e-44
Identity = 96/229 (41.92%), Postives = 133/229 (58.08%), Query Frame = 0
Query:  128 SLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNF------IPYEEYVRLSRLLLRGGS-TKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLPIASDPVCSEGCYKE-CSTAVTSKRVCP 348
            S KP P    +  KYND  F K ++ LF  K+     A SP+          YE +V +S+ +++G S  + +  V  VL S+  PG  + FR LFP  ++ A EFNA +T  FF WLVGP++V   E    V G ++   + V I++CRYLE+  C G CV++CK+PTQ FFT + G+P+TM PNFED+SC M +G  P P   DPV ++ CY E CS +  S  VCP
Sbjct:   35 SGKPAPLG--QKTKYNDGFFEKAFMTLFARKMENF-AANSPKAEKKGWWEHDYESFVDVSKRVMQGRSRIQQQQVVREVLLSMLPPGAPAQFRKLFP-PTKWAAEFNAALTVPFFHWLVGPSEVIEVE----VNGEKQ--KSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMIPNFEDMSCEMVYGQVPPPFEEDPVSTQPCYAEICSMSNPSSSVCP 253          
The following BLAST results are available for this feature:
BLAST of EWM30570.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113237|gb|EWM30570.1|0.000e+0100.00protein of unknown function DUF4033 [Nannochlorops... [more]
gi|553181359|ref|XP_005853551.1|0.000e+094.57hypothetical protein NGA_0357502 [Nannochloropsis ... [more]
gi|778674788|ref|XP_011650294.1|6.769e-4840.43PREDICTED: beta-carotene isomerase D27, chloroplas... [more]
gi|168000160|ref|XP_001752784.1|7.132e-4841.99predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|545366773|ref|XP_005648267.1|6.284e-4740.26hypothetical protein COCSUDRAFT_33175 [Coccomyxa s... [more]
gi|659095394|ref|XP_008448557.1|6.729e-4740.17PREDICTED: beta-carotene isomerase D27, chloroplas... [more]
gi|385763996|gb|AFI78801.1|2.812e-4540.72putative D27 family protein, partial [Spirogyra pr... [more]
gi|1194462542|gb|OUC16033.1|1.444e-4440.19hypothetical protein B0A82_03970 [Alkalinema sp. C... [more]
gi|1191680348|gb|OTG32311.1|1.787e-4439.39hypothetical protein HannXRQ_Chr03g0085241 [Helian... [more]
gi|1009156626|ref|XP_015896339.1|2.073e-4441.92PREDICTED: beta-carotene isomerase D27, chloroplas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna99rna99Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications