rna9896, rna9896 (mRNA) Nannochloropsis gaditana

Overview
Namerna9896
Unique Namerna9896
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length613
Alignment locationKK037257.1:76583..77366 +

Link to JBrowse

Properties
Property NameValue
Product5 -3 exoribonuclease 1
Orig transcript idgnl|cribi|Naga_101417g1.10203.mrna
Orig protein idgnl|cribi|Naga_101417g1.10203
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:76583..77366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101417g1gene9604Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9896rna9896-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20808.1cds9865Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9896 ID=rna9896|Name=rna9896|organism=Nannochloropsis gaditana|type=mRNA|length=613bp
CCTCCCGCCCTCCCTCCCTCCCTAGGTTGCCACCCGCCTCCTTTTCTCCG
CCTGCCCTCCCCTCTACTGGCACCTGACCTCCCTGTACCTCGCCCACGCG
GAGGAGAAAGGAGGAAGGGGAAGAGGGAGGAAGGGAGGGAGGGAGGGGTG
CTGGTGGTATGTGAGCCTCTACCTGGTGCTTTACAACGCACTTGGGCCGG
CCATGCACGTCAATTTTTTACCTTGGACTTAATCGCTTGGCGCGTAAATC
AAAAAGAAAAAGAAGAAGCGATCGAAGATGGGTCTCTACCCCCGAGGCCC
CTCTCTGCTTAGATCGCGTTTTGTTTTATCGTATCTTAGTTGAAAGGCCT
TGACCAAGGATGACACGATGTAGGTATCTATGCATATATATATATATATA
TATATATACATATACATATAATTTGGAATATATACTGATATAAAGATAGA
TAGATATAGATATAAACATACACAAAGCGATACATGAATCGAGAGAAAAT
AAGATACATGGATATGGATAGACAGATAGTAGAGAGACAGATGCCCGTGC
TGAAAGGGATTGCACCACGGGGTCCAAAAGGAGACATCGACCGCCTCGTT
CCAGAGGCACCGG
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protein sequence of rna9896

>rna9896-protein ID=rna9896-protein|Name=rna9896|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFP
AVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGI
PKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEE
LIVLDERKMFQRIFTYTDRLYKIVAPTRVRAGGGREGGREGKQAHSWLLV
ESTLSWSSTWGLILDKS
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mRNA from alignment at KK037257.1:76583..77366+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9896 ID=rna9896|Name=rna9896|organism=Nannochloropsis gaditana|type=mRNA|length=784bp|location=Sequence derived from alignment at KK037257.1:76583..77366+ (Nannochloropsis gaditana)
CAATGATCAGGGCACCGCGGATGGATGCTccgagaaggacaaggagaaga
ccgCTGGCAAGTCATGGACGCGGGGATGGCGACGCAAGCGTGATGGACCG
CGGCAATGACCGAAACAATTGCCACAAACCGCGGCGCCCGAGGGCATTTC
CTGCGGTTGTAGGCATCTTGTTGTACATGGTAGGGACAcacgcctttctt
tctccaacaTCACCGTCATTGAGGACCGTCGGTGTCAAccgagggaaggc
aaggtgCGTAGGGCGGCGTAGGAATGATGGACGGGAGGTGTTCGAGGCGA
GCTCTCTGTCCACGAGGGGCATGCGAAGGGCATATACGCGCGCACAGCCA
CCCACACATCCCCGCACTACCATACACACAGCCCCttgcctccgtccttc
cgtCGTCAAAGCGTCGTGGTGATGGGTATTCCGAAGCTTTTTCGGTGGCT
TGTGGATTTGTACCCGGCGGTACAACAACGCGTGGGGGAGACGTTGGGGA
CGGAGACGGCGAAAGTGGAAAATTTCTACCTGGACATGAACGGGATCATC
CACATGTGCACGCACGCGAACGCGGAGGAGTTGATCGTGCTGGACGAGCG
CAAGATGTTTCAACGCATCTTTACCTACACGGACCGCCTGTACAAGATCG
TGGCGCCCACCAgggtgagggcggggggagggcgggagggagggcgggag
gggaaacaaGCACATTCGTGGCTTTTGGTGGAGTCGACTCTTTCTTGGTC
CTCGACGTGGGGTCTTATCCTGGACAAGAGCTGA
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Coding sequence (CDS) from alignment at KK037257.1:76583..77366+

>rna9896 ID=rna9896|Name=rna9896|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at KK037257.1:76583..77366+ (Nannochloropsis gaditana)
ATGATCAGGGCACCGCGGATGGATGCTccgagaaggacaaggagaagacc
gCTGGCAAGTCATGGACGCGGGGATGGCGACGCAAGCGTGATGGACCGCG
GCAATGACCGAAACAATTGCCACAAACCGCGGCGCCCGAGGGCATTTCCT
GCGGTTGTAGGCATCTTGTTGTACATGGTAGGGACAcacgcctttctttc
tccaacaTCACCGTCATTGAGGACCGTCGGTGTCAAccgagggaaggcaa
gCCCCttgcctccgtccttccgtCGTCAAAGCGTCGTGGTGATGGGTATT
CCGAAGCTTTTTCGGTGGCTTGTGGATTTGTACCCGGCGGTACAACAACG
CGTGGGGGAGACGTTGGGGACGGAGACGGCGAAAGTGGAAAATTTCTACC
TGGACATGAACGGGATCATCCACATGTGCACGCACGCGAACGCGGAGGAG
TTGATCGTGCTGGACGAGCGCAAGATGTTTCAACGCATCTTTACCTACAC
GGACCGCCTGTACAAGATCGTGGCGCCCACCAgggtgagggcggggggag
ggcgggagggagggcgggaggggaaacaaGCACATTCGTGGCTTTTGGTG
GAGTCGACTCTTTCTTGGTCCTCGACGTGGGGTCTTATCCTGGACAAGAG
CTGAATGATCAGGGCACCGCGGATGGATGCTccgagaaggacaaggagaa
gaccgCTGGCAAGTCATGGACGCGGGGATGGCGACGCAAGCGTGATGGAC
CGCGGCAATGACCGAAACAATTGCCACAAACCGCGGCGCCCGAGGGCATT
TCCTGCGGTTGTAGGCATCTTGTTGTACATGGTAGGGACAcacgcctttc
tttctccaacaTCACCGTCATTGAGGACCGTCGGTGTCAAccgagggaag
gcaagCCCCttgcctccgtccttccgtCGTCAAAGCGTCGTGGTGATGGG
TATTCCGAAGCTTTTTCGGTGGCTTGTGGATTTGTACCCGGCGGTACAAC
AACGCGTGGGGGAGACGTTGGGGACGGAGACGGCGAAAGTGGAAAATTTC
TACCTGGACATGAACGGGATCATCCACATGTGCACGCACGCGAACGCGGA
GGAGTTGATCGTGCTGGACGAGCGCAAGATGTTTCAACGCATCTTTACCT
ACACGGACCGCCTGTACAAGATCGTGGCGCCCACCAgggtgagggcgggg
ggagggcgggagggagggcgggaggggaaacaaGCACATTCGTGGCTTTT
GGTGGAGTCGACTCTTTCTTGGTCCTCGACGTGGGGTCTTATCCTGGACA
AGAGCTGA
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Synonyms
Publications