EWM20808.1, cds9865 (CDS) Nannochloropsis gaditana

Overview
NameEWM20808.1
Unique Namecds9865
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:76585..76835 +
Alignment locationKK037257.1:76964..77366 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20808.1
Product5 -3 exoribonuclease 1
Orig transcript idgnl|cribi|Naga_101417g1.10203.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:76585..76835 +
KK037257.1supercontigKK037257.1:76964..77366 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003676nucleic acid binding
GO:0004527exonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR0270735_3_exoribonuclease
IPR004859Put_53exo
Homology
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|585100718|gb|EWM20808.1| (5 -3 exoribonuclease 1 [Nannochloropsis gaditana])

HSP 1 Score: 448.358 bits (1152), Expect = 1.641e-159
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRVRAGGGREGGREGKQAHSWLLVESTLSWSSTWGLILDKS 217
            MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRVRAGGGREGGREGKQAHSWLLVESTLSWSSTWGLILDKS
Sbjct:    1 MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRVRAGGGREGGREGKQAHSWLLVESTLSWSSTWGLILDKS 217          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|553191837|ref|XP_005855468.1| (5 -3 exoribonuclease, partial [Nannochloropsis gaditana CCMP526] >gi|422293597|gb|EKU20897.1| 5 -3 exoribonuclease, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 323.168 bits (827), Expect = 7.508e-111
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0
Query:    1 MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERK 158
            MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRN CHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRR+SVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERK
Sbjct:    1 MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNYCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRESVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERK 158          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|873239646|emb|CEL94169.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 121.709 bits (304), Expect = 2.663e-28
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0
Query:   98 MGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
            MGIPKLFRWL+DLYP+V+QR+G+TLG  T  V+ FYLDMNGIIHMCTHAN + + +  DE +MF RIF Y DRLYKI+ P R+
Sbjct:    1 MGIPKLFRWLIDLYPSVRQRIGDTLGDTT--VDTFYLDMNGIIHMCTHANVDADFVEHDEEEMFHRIFAYIDRLYKIIRPRRL 81          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|298713577|emb|CBJ27105.1| (dhm exonuclease [Ectocarpus siliculosus])

HSP 1 Score: 117.472 bits (293), Expect = 7.962e-27
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 0
Query:   98 MGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
            MGIPKLFRWL D YP + QR+ + L   TA ++N YLDMNG+IHMCTH N +E I L+E++MF+RIF +TDR++K+V P R+
Sbjct:  131 MGIPKLFRWLTDQYPVISQRLDQGLNEHTAPIDNLYLDMNGVIHMCTHHNDDEFIELNEKEMFRRIFIFTDRMFKLVRPRRL 212          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|1210516369|dbj|GAX24704.1| (5'-3' exoribonuclease 1 [Fistulifera solaris])

HSP 1 Score: 113.235 bits (282), Expect = 2.507e-25
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 0
Query:   48 AFPAVVGILLYMVGTH---AFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
            A+P V    + ++ +H    FL+P      T    R + + + PS    S  ++GIPK+FRWL D YP V  R  E   ++   V+NFYLDMNGIIH CTH N E E+++LDE  MF++IF Y DRLYK+V P+++
Sbjct:    9 AYPLVFTAFILILASHQANGFLTPA-----TTRTCRKQENVVMPS---SSTALLGIPKMFRWLTDQYPDVLNRQLEQGLSDDLIVDNFYLDMNGIIHPCTHGNNEGEIVILDETAMFKKIFLYVDRLYKLVQPSKL 136          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|1072237512|gb|OEU22239.1| (putative 5-3 exonuclease [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 107.071 bits (266), Expect = 1.657e-24
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 0
Query:   91 RRQSVVVMGIPKLFRWLVDLYP-AVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
            +  S+ + GIPK+FRWL D YP  +  R+ E L  E  +V+NFYLDMNGIIH CTH N E EL+ LDE  MF++IF Y DRLYK+V PT V
Sbjct:    3 KSTSMSLFGIPKMFRWLTDQYPDIINNRLEEGLA-EDIEVDNFYLDMNGIIHPCTHGNNEAELVYLDETAMFKKIFLYVDRLYKMVQPTHV 92          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|397607914|gb|EJK59848.1| (hypothetical protein THAOC_19883 [Thalassiosira oceanica])

HSP 1 Score: 107.071 bits (266), Expect = 3.183e-23
Identity = 65/146 (44.52%), Postives = 84/146 (57.53%), Query Frame = 0
Query:   47 RAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGK-ASPLPPSFR---------RQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETA--KVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
            RA P ++        +  F    SPS +     RG+ A  + PS R         + S  +MGIPK+FRWL D YP +  R    LG+ T+   V+NFYLDMNGIIH CTH N E E+ +LDE +MF++IF Y DRLYKIV P +V
Sbjct:    2 RALPILLSAAAVTQQSSGF---HSPSPQVTRARRGENAIRIDPSDRARVTHSSSPQSSTALMGIPKMFRWLTDQYPNILNR---RLGSATSIPHVDNFYLDMNGIIHPCTHGNNEDEITILDETEMFKKIFGYVDRLYKIVQPRKV 141          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|1189384881|gb|OSX72085.1| (hypothetical protein BU14_0470s0014 [Porphyra umbilicalis])

HSP 1 Score: 106.686 bits (265), Expect = 5.220e-23
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 0
Query:   98 MGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
            MGIPK FRWL D YP + QR+      ET   ++FYLDMNGIIH CTH N +E++ +DE  MF RIF YTDRL++IV P+++
Sbjct:    1 MGIPKFFRWLSDRYPLINQRL-----DETQTFDHFYLDMNGIIHQCTHPNDDEVVAMDEELMFSRIFHYTDRLFRIVKPSKL 77          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|544216146|ref|XP_005538218.1| (exonuclease [Cyanidioschyzon merolae strain 10D] >gi|449018780|dbj|BAM82182.1| exonuclease [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 96.6709 bits (239), Expect = 1.599e-19
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 0
Query:   98 MGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
            MGIP+ FRWL   YP + Q +         + +NFYLDMNGIIH CTH N  ++I LDE +MF RIF YTDRLY+IV P + 
Sbjct:    1 MGIPRFFRWLSLRYPVINQSL-----EGDREFDNFYLDMNGIIHTCTHNNDGDIIFLDEVEMFARIFAYTDRLYRIVKPRKF 77          
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|1210516685|dbj|GAX24174.1| (5'-3' exoribonuclease 1 [Fistulifera solaris])

HSP 1 Score: 95.5153 bits (236), Expect = 3.621e-19
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 0
Query:  103 LFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
            +FRWL D YP V  R  E   ++   V+NFYLDMNGIIH CTH N E E+++LDE  MF++IF Y DRLYK+V P+++
Sbjct:    1 MFRWLTDQYPDVLNRQLEQGLSDDLIVDNFYLDMNGIIHPCTHGNNEGEIVILDETAMFKKIFLYVDRLYKLVQPSKL 78          
The following BLAST results are available for this feature:
BLAST of EWM20808.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100718|gb|EWM20808.1|1.641e-159100.005 -3 exoribonuclease 1 [Nannochloropsis gaditana][more]
gi|553191837|ref|XP_005855468.1|7.508e-11198.735 -3 exoribonuclease, partial [Nannochloropsis gad... [more]
gi|873239646|emb|CEL94169.1|2.663e-2866.27unnamed protein product [Vitrella brassicaformis C... [more]
gi|298713577|emb|CBJ27105.1|7.962e-2758.54dhm exonuclease [Ectocarpus siliculosus][more]
gi|1210516369|dbj|GAX24704.1|2.507e-2543.385'-3' exoribonuclease 1 [Fistulifera solaris][more]
gi|1072237512|gb|OEU22239.1|1.657e-2457.14putative 5-3 exonuclease [Fragilariopsis cylindrus... [more]
gi|397607914|gb|EJK59848.1|3.183e-2344.52hypothetical protein THAOC_19883 [Thalassiosira oc... [more]
gi|1189384881|gb|OSX72085.1|5.220e-2356.10hypothetical protein BU14_0470s0014 [Porphyra umbi... [more]
gi|544216146|ref|XP_005538218.1|1.599e-1953.66exonuclease [Cyanidioschyzon merolae strain 10D] >... [more]
gi|1210516685|dbj|GAX24174.1|3.621e-1955.135'-3' exoribonuclease 1 [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9896rna9896Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications