EWM20808.1, cds9865 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|585100718|gb|EWM20808.1| (5 -3 exoribonuclease 1 [Nannochloropsis gaditana]) HSP 1 Score: 448.358 bits (1152), Expect = 1.641e-159 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query: 1 MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRVRAGGGREGGREGKQAHSWLLVESTLSWSSTWGLILDKS 217
MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRVRAGGGREGGREGKQAHSWLLVESTLSWSSTWGLILDKS
Sbjct: 1 MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRVRAGGGREGGREGKQAHSWLLVESTLSWSSTWGLILDKS 217
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|553191837|ref|XP_005855468.1| (5 -3 exoribonuclease, partial [Nannochloropsis gaditana CCMP526] >gi|422293597|gb|EKU20897.1| 5 -3 exoribonuclease, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 323.168 bits (827), Expect = 7.508e-111 Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0
Query: 1 MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNNCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERK 158
MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRN CHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRR+SVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERK
Sbjct: 1 MIRAPRMDAPRRTRRRPLASHGRGDGDASVMDRGNDRNYCHKPRRPRAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGKASPLPPSFRRESVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERK 158
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|873239646|emb|CEL94169.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 121.709 bits (304), Expect = 2.663e-28 Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0
Query: 98 MGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
MGIPKLFRWL+DLYP+V+QR+G+TLG T V+ FYLDMNGIIHMCTHAN + + + DE +MF RIF Y DRLYKI+ P R+
Sbjct: 1 MGIPKLFRWLIDLYPSVRQRIGDTLGDTT--VDTFYLDMNGIIHMCTHANVDADFVEHDEEEMFHRIFAYIDRLYKIIRPRRL 81
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|298713577|emb|CBJ27105.1| (dhm exonuclease [Ectocarpus siliculosus]) HSP 1 Score: 117.472 bits (293), Expect = 7.962e-27 Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 0
Query: 98 MGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
MGIPKLFRWL D YP + QR+ + L TA ++N YLDMNG+IHMCTH N +E I L+E++MF+RIF +TDR++K+V P R+
Sbjct: 131 MGIPKLFRWLTDQYPVISQRLDQGLNEHTAPIDNLYLDMNGVIHMCTHHNDDEFIELNEKEMFRRIFIFTDRMFKLVRPRRL 212
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|1210516369|dbj|GAX24704.1| (5'-3' exoribonuclease 1 [Fistulifera solaris]) HSP 1 Score: 113.235 bits (282), Expect = 2.507e-25 Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 0
Query: 48 AFPAVVGILLYMVGTH---AFLSPTSPSLRTVGVNRGKASPLPPSFRRQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
A+P V + ++ +H FL+P T R + + + PS S ++GIPK+FRWL D YP V R E ++ V+NFYLDMNGIIH CTH N E E+++LDE MF++IF Y DRLYK+V P+++
Sbjct: 9 AYPLVFTAFILILASHQANGFLTPA-----TTRTCRKQENVVMPS---SSTALLGIPKMFRWLTDQYPDVLNRQLEQGLSDDLIVDNFYLDMNGIIHPCTHGNNEGEIVILDETAMFKKIFLYVDRLYKLVQPSKL 136
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|1072237512|gb|OEU22239.1| (putative 5-3 exonuclease [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 107.071 bits (266), Expect = 1.657e-24 Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 0
Query: 91 RRQSVVVMGIPKLFRWLVDLYP-AVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
+ S+ + GIPK+FRWL D YP + R+ E L E +V+NFYLDMNGIIH CTH N E EL+ LDE MF++IF Y DRLYK+V PT V
Sbjct: 3 KSTSMSLFGIPKMFRWLTDQYPDIINNRLEEGLA-EDIEVDNFYLDMNGIIHPCTHGNNEAELVYLDETAMFKKIFLYVDRLYKMVQPTHV 92
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|397607914|gb|EJK59848.1| (hypothetical protein THAOC_19883 [Thalassiosira oceanica]) HSP 1 Score: 107.071 bits (266), Expect = 3.183e-23 Identity = 65/146 (44.52%), Postives = 84/146 (57.53%), Query Frame = 0
Query: 47 RAFPAVVGILLYMVGTHAFLSPTSPSLRTVGVNRGK-ASPLPPSFR---------RQSVVVMGIPKLFRWLVDLYPAVQQRVGETLGTETA--KVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
RA P ++ + F SPS + RG+ A + PS R + S +MGIPK+FRWL D YP + R LG+ T+ V+NFYLDMNGIIH CTH N E E+ +LDE +MF++IF Y DRLYKIV P +V
Sbjct: 2 RALPILLSAAAVTQQSSGF---HSPSPQVTRARRGENAIRIDPSDRARVTHSSSPQSSTALMGIPKMFRWLTDQYPNILNR---RLGSATSIPHVDNFYLDMNGIIHPCTHGNNEDEITILDETEMFKKIFGYVDRLYKIVQPRKV 141
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|1189384881|gb|OSX72085.1| (hypothetical protein BU14_0470s0014 [Porphyra umbilicalis]) HSP 1 Score: 106.686 bits (265), Expect = 5.220e-23 Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 0
Query: 98 MGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
MGIPK FRWL D YP + QR+ ET ++FYLDMNGIIH CTH N +E++ +DE MF RIF YTDRL++IV P+++
Sbjct: 1 MGIPKFFRWLSDRYPLINQRL-----DETQTFDHFYLDMNGIIHQCTHPNDDEVVAMDEELMFSRIFHYTDRLFRIVKPSKL 77
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|544216146|ref|XP_005538218.1| (exonuclease [Cyanidioschyzon merolae strain 10D] >gi|449018780|dbj|BAM82182.1| exonuclease [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 96.6709 bits (239), Expect = 1.599e-19 Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 0
Query: 98 MGIPKLFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
MGIP+ FRWL YP + Q + + +NFYLDMNGIIH CTH N ++I LDE +MF RIF YTDRLY+IV P +
Sbjct: 1 MGIPRFFRWLSLRYPVINQSL-----EGDREFDNFYLDMNGIIHTCTHNNDGDIIFLDEVEMFARIFAYTDRLYRIVKPRKF 77
BLAST of EWM20808.1 vs. NCBI_GenBank
Match: gi|1210516685|dbj|GAX24174.1| (5'-3' exoribonuclease 1 [Fistulifera solaris]) HSP 1 Score: 95.5153 bits (236), Expect = 3.621e-19 Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 0
Query: 103 LFRWLVDLYPAVQQRVGETLGTETAKVENFYLDMNGIIHMCTHANAE-ELIVLDERKMFQRIFTYTDRLYKIVAPTRV 179
+FRWL D YP V R E ++ V+NFYLDMNGIIH CTH N E E+++LDE MF++IF Y DRLYK+V P+++
Sbjct: 1 MFRWLTDQYPDVLNRQLEQGLSDDLIVDNFYLDMNGIIHPCTHGNNEGEIVILDETAMFKKIFLYVDRLYKLVQPSKL 78 The following BLAST results are available for this feature:
BLAST of EWM20808.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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