rna9890, rna9890 (mRNA) Nannochloropsis gaditana

Overview
Namerna9890
Unique Namerna9890
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length590
Alignment locationKK037257.1:66141..66584 -

Link to JBrowse

Properties
Property NameValue
Productubiquitin carboxyl-terminal hydrolase isozyme l5
Orig transcript idgnl|cribi|Naga_101532g1.43.mrna
Orig protein idgnl|cribi|Naga_101532g1.43
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:66141..66584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101532g1gene9598Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9890rna9890-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20814.1cds9859Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9890 ID=rna9890|Name=rna9890|organism=Nannochloropsis gaditana|type=mRNA|length=590bp
AACCACGCAGAGCCATGGAAACAAAAAGGAGGAGACGGAGACGAAGGAGA
CGTCCACAGTATGGGGGACTTCCCCTACTCATTCTGCTGCTAGGCCTCGG
GAGCTCCTCTAAGATTCCCGCATTGTTTTCCTGTCTCTCGACGCGTGCGT
CGACGACAAAGCGGAGAAAAAAGGGTGGGAGGTCGTTCCTGGGCCCCTCG
TTCCCCCCCACCCTCCCCTCTTCCTCCTCCTCTTGCTTTTCGTCGTCTTC
CACCCAGCCCTTGAACCTGCCACCGACGCCTCCCGATGATCAGGTTATGG
CTGCCCCAAATCCTGGAGCGTCAGTCTCCACTTCATCCCCGCAACCAGCG
TCGGCGTCCCCAAACCGAAGGTTGCATGCCCCGCAGGCCCTGGAATTGGA
AGGAGAAGACTCCGAAGGAGCATTAAAAGGGCCAAAAAGGCCGAAAAAGA
CGGCTCAAACGGTGGGGAGCCGGGCCATTACCGCCCTCTTGCACAAGCAC
GACGGGGACGTGGGGGCCCTCCTGGACGTGATCGAGACGCACGTGGGCGG
GTTCGAGAAGCAAAACTGTGCCATGGCCTTCAACCGGTAG
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protein sequence of rna9890

>rna9890-protein ID=rna9890-protein|Name=rna9890|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MAENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLV
FLFKWKQEETGESGTQEA
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mRNA from alignment at KK037257.1:66141..66584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9890 ID=rna9890|Name=rna9890|organism=Nannochloropsis gaditana|type=mRNA|length=444bp|location=Sequence derived from alignment at KK037257.1:66141..66584- (Nannochloropsis gaditana)
ATGGCCGAGAATTGGTGCACGATTGAATCGGACCCTGGAGTGTTTACGGA
GGTCATCGAGAACTTTGGGGTTGAAGGGGTTCAGGTAAGGGAGAAGACGG
AAATGGAAGAATGGCTCGTTTCCTGTCGGGGTCGCACGGCTTTGTTTCAC
CTATTGCGTGTTTCCGCAGGTAGAAGAGATTTATGATTTGGATCCGGCGT
CCTTCGCCGACCTGGCGCCTGTGTATGGCCTGGTCTTCTTGTTCAAGTGG
AAGCAGGTGACACAGGAGGGAGAGAGGGAGGGAGGGAGAGAGAGAGAGTG
CAAGGGAGGGAGGAAGAGTAGGATGAAGAGGGGGGAGAGAGGAGGCGAGG
GAGGAGGGAGAGGAAAGTCCCTTTCTCTTTCTGGCCTTTAAAAATACTGC
GGGGACAGGAGGAGACGGGAGAATCAGGCACCCAAGAAGCTTAG
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Coding sequence (CDS) from alignment at KK037257.1:66141..66584-

>rna9890 ID=rna9890|Name=rna9890|organism=Nannochloropsis gaditana|type=CDS|length=621bp|location=Sequence derived from alignment at KK037257.1:66141..66584- (Nannochloropsis gaditana)
GAGGAGACGGGAGAATCAGGCACCCAAGAAGCTTAGGTAGAAGAGATTTA
TGATTTGGATCCGGCGTCCTTCGCCGACCTGGCGCCTGTGTATGGCCTGG
TCTTCTTGTTCAAGTGGAAGCAGATGGCCGAGAATTGGTGCACGATTGAA
TCGGACCCTGGAGTGTTTACGGAGGTCATCGAGAACTTTGGGGTTGAAGG
GGTTCAGGAGGAGACGGGAGAATCAGGCACCCAAGAAGCTTAGGTAGAAG
AGATTTATGATTTGGATCCGGCGTCCTTCGCCGACCTGGCGCCTGTGTAT
GGCCTGGTCTTCTTGTTCAAGTGGAAGCAGATGGCCGAGAATTGGTGCAC
GATTGAATCGGACCCTGGAGTGTTTACGGAGGTCATCGAGAACTTTGGGG
TTGAAGGGGTTCAGGAGGAGACGGGAGAATCAGGCACCCAAGAAGCTTAG
GTAGAAGAGATTTATGATTTGGATCCGGCGTCCTTCGCCGACCTGGCGCC
TGTGTATGGCCTGGTCTTCTTGTTCAAGTGGAAGCAGATGGCCGAGAATT
GGTGCACGATTGAATCGGACCCTGGAGTGTTTACGGAGGTCATCGAGAAC
TTTGGGGTTGAAGGGGTTCAG
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Synonyms
Publications