EWM20814.1, cds9859 (CDS) Nannochloropsis gaditana

Overview
NameEWM20814.1
Unique Namecds9859
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:66501..66584 -
Alignment locationKK037257.1:66329..66415 -
Alignment locationKK037257.1:66141..66176 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20814.1
Productubiquitin carboxyl-terminal hydrolase isozyme l5
Orig transcript idgnl|cribi|Naga_101532g1.43.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:66501..66584 -
KK037257.1supercontigKK037257.1:66329..66415 -
KK037257.1supercontigKK037257.1:66141..66176 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004843thiol-dependent ubiquitin-specific protease activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR001578Peptidase_C12_UCH
Homology
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|585100729|gb|EWM20814.1| (ubiquitin carboxyl-terminal hydrolase isozyme l5 [Nannochloropsis gaditana])

HSP 1 Score: 139.043 bits (349), Expect = 8.403e-42
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query:    1 MAENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEETGESGTQEA 68
            MAENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEETGESGTQEA
Sbjct:    1 MAENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEETGESGTQEA 68          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|222093470|gb|ACM43511.1| (ubiquitin carboxyl-terminal hydrolase isozyme L5 [Scylla paramamosain])

HSP 1 Score: 93.2041 bits (230), Expect = 3.296e-21
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    2 AENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEE 59
            A NWC IESDPGVFT++++ FGV+GVQVEEI+ LD  SF+ L PV+GL+FLFKW+QEE
Sbjct:    6 AGNWCLIESDPGVFTDLVQKFGVKGVQVEEIWSLDEESFSSLKPVHGLIFLFKWQQEE 63          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|1067072031|ref|XP_018019441.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Hyalella azteca])

HSP 1 Score: 92.8189 bits (229), Expect = 4.441e-21
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 0
Query:    2 AENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEETGESGT 65
            A NWC IESDPGVFT++I+ FGV+GVQVEEI+ LD  +FA+L PV+GL+FLFKW++ ET    T
Sbjct:    4 AGNWCLIESDPGVFTDLIQKFGVDGVQVEEIWSLDDDAFANLKPVHGLIFLFKWQKLETQPEST 67          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|260794993|ref|XP_002592491.1| (hypothetical protein BRAFLDRAFT_118926 [Branchiostoma floridae] >gi|229277711|gb|EEN48502.1| hypothetical protein BRAFLDRAFT_118926 [Branchiostoma floridae])

HSP 1 Score: 91.6633 bits (226), Expect = 8.226e-21
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    5 WCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEE 59
            WC IESDPGVFTE+I+ FGV+G+QVEEI+ LDP +F  L PV+GL+FLFKW+QEE
Sbjct:    7 WCLIESDPGVFTELIKGFGVKGLQVEEIWSLDPENFDKLKPVHGLIFLFKWQQEE 61          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|498930888|ref|XP_004519004.1| (ubiquitin carboxyl-terminal hydrolase isozyme L5 [Ceratitis capitata])

HSP 1 Score: 92.0485 bits (227), Expect = 8.401e-21
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    2 AENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEE 59
            A +WC IESDPGVFTE+I +FG EGVQVEEI+ LDP  F DL P++GL+FLFKW Q+E
Sbjct:    5 AGSWCLIESDPGVFTELIRDFGCEGVQVEEIWSLDPDLFKDLEPIHGLIFLFKWVQDE 62          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|734552557|gb|KHN80035.1| (putative ubiquitin carboxyl-terminal hydrolase ubh-4 [Toxocara canis])

HSP 1 Score: 93.2041 bits (230), Expect = 1.221e-20
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    2 AENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWK--QEETGE 62
            A NWC IESDPGVFTE+I  FGV GVQVEE+Y LD   FADL PV+GL+FLFKW+   E +GE
Sbjct:  307 AGNWCLIESDPGVFTELIRGFGVVGVQVEELYSLDQEQFADLKPVHGLIFLFKWRAGDEPSGE 369          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|1126174203|ref|XP_019619267.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Branchiostoma belcheri])

HSP 1 Score: 91.6633 bits (226), Expect = 1.229e-20
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    5 WCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEE 59
            WC IESDPGVFTE+I+ FGV+G+QVEEI+ LDP +F  L PV+GL+FLFKW+QEE
Sbjct:    7 WCLIESDPGVFTELIKGFGVKGLQVEEIWSLDPENFDKLKPVHGLIFLFKWQQEE 61          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|170581201|ref|XP_001895580.1| (ubiquitin C-terminal hydrolase UCH-L5 [Brugia malayi])

HSP 1 Score: 91.2781 bits (225), Expect = 1.256e-20
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 AENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEE 59
            A NWC IESDPGVFTE+I  FGV GVQVEE+Y LD   F+DL PV+GL+FLFKW+  E
Sbjct:    4 AGNWCLIESDPGVFTELIRGFGVSGVQVEELYSLDKQLFSDLKPVHGLIFLFKWRAGE 61          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|1060233500|ref|XP_017842235.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5 [Drosophila busckii] >gi|924558396|gb|ALC43408.1| Uch-L3 [Drosophila busckii])

HSP 1 Score: 91.2781 bits (225), Expect = 1.723e-20
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    4 NWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEE 59
            NWC IESDPGVFTE+I  FG EG QVEEI+ LD  SF DL P++GL+FLFKW QE+
Sbjct:    8 NWCLIESDPGVFTELIREFGCEGAQVEEIWSLDSESFKDLEPIHGLIFLFKWVQED 63          
BLAST of EWM20814.1 vs. NCBI_GenBank
Match: gi|766920094|ref|XP_011504501.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5 [Ceratosolen solmsi marchali])

HSP 1 Score: 91.2781 bits (225), Expect = 1.739e-20
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 0
Query:    1 MAENWCTIESDPGVFTEVIENFGVEGVQVEEIYDLDPASFADLAPVYGLVFLFKWKQEE 59
            MA NWC IESDPGVFTE+I+ FGV+G QVEEIY LD   F ++ P++GL+FLFKW Q++
Sbjct:    4 MAGNWCLIESDPGVFTELIKEFGVKGAQVEEIYSLDDEQFENVKPIHGLIFLFKWVQDD 62          
The following BLAST results are available for this feature:
BLAST of EWM20814.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100729|gb|EWM20814.1|8.403e-42100.00ubiquitin carboxyl-terminal hydrolase isozyme l5 [... [more]
gi|222093470|gb|ACM43511.1|3.296e-2168.97ubiquitin carboxyl-terminal hydrolase isozyme L5 [... [more]
gi|1067072031|ref|XP_018019441.1|4.441e-2164.06PREDICTED: ubiquitin carboxyl-terminal hydrolase i... [more]
gi|260794993|ref|XP_002592491.1|8.226e-2170.91hypothetical protein BRAFLDRAFT_118926 [Branchiost... [more]
gi|498930888|ref|XP_004519004.1|8.401e-2168.97ubiquitin carboxyl-terminal hydrolase isozyme L5 [... [more]
gi|734552557|gb|KHN80035.1|1.221e-2068.25putative ubiquitin carboxyl-terminal hydrolase ubh... [more]
gi|1126174203|ref|XP_019619267.1|1.229e-2070.91PREDICTED: ubiquitin carboxyl-terminal hydrolase i... [more]
gi|170581201|ref|XP_001895580.1|1.256e-2068.97ubiquitin C-terminal hydrolase UCH-L5 [Brugia mala... [more]
gi|1060233500|ref|XP_017842235.1|1.723e-2069.64PREDICTED: ubiquitin carboxyl-terminal hydrolase i... [more]
gi|766920094|ref|XP_011504501.1|1.739e-2064.41PREDICTED: ubiquitin carboxyl-terminal hydrolase i... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9890rna9890Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications