rna989, rna989 (mRNA) Nannochloropsis gaditana

Overview
Namerna989
Unique Namerna989
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length474
Alignment locationCM002456.1:908964..910834 -

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Properties
Property NameValue
ProductPhotosystem II stability/assembly factor
Orig transcript idgnl|cribi|Naga_100114g2.2475.mrna
Orig protein idgnl|cribi|Naga_100114g2.2475
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:908964..910834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100114g2gene952Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna989rna989-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29690.1cds988Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna989 ID=rna989|Name=rna989|organism=Nannochloropsis gaditana|type=mRNA|length=474bp
ATGTGGCACCGCTTCCACAGATTCTTTCTGCATTCTCCTGGACTCTTACT
GCCCTACCCACTTGGGAAGCAGGGGGCACACCATCTTTTAAATCCAACGG
TATACGTTGCTGGCTGCGGAGTCACTTCCCTTGCCCTCTGTCTCGGAACA
ATCTGCAGACACGAACTGCAGAAGGGCTACCCACACGCAGGAAAGCCTAT
AAGCTGGATGTACACAACTAAGCTACCCCAAAGAATAGCACGGGTCAACG
GCTGCAGTCCTTGCTCTTCAGCTACTCTATTTCTCGGGTTCTGTCAGCGC
ATGACCCAGCCTGTCAAAAGAACAAACTGCCCACGAGAATTGAGAAGACG
CTGGAATAGATTAAAAGGGAACCAGTCATTCAGGGAGAGTCGTGTAATGA
AATTAAATTTCGTGACAGGAATGGGGATGAGCGTGACTTACCACTCGGAG
TGTCGAGATTTGACATCGAGGTAG
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protein sequence of rna989

>rna989-protein ID=rna989-protein|Name=rna989|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp
MRKVNFLVAACAMVLGVSPASAFMPFAARSSSAIKMSASTGEKSSRSENM
LPDSSVSRRDLVKTTSVAAAALSAAGALGGSTQPAAAASNFAWEQVTGIP
MGATLYDVDFDSKDPEHGWIVGSKGTFLETTDGGRSWVPRSFVDLDPDEE
VTYRFERVSFNNGEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGEPSTV
FATGPNSAEMTTSTGAIYKTTNAGRNWKAQVKETIDATLNRISSSGVKGA
SYFTGSIISVVRDQLSGAYLAVSSRGNFFLTWLPGQDFWVPHNRGTSRRI
QNMGFVKGDTSKGVWMSLNGGLLQICEPNQDLSSDEEFKFADSKIRSGGY
GILDVSWKDEQEVWAVGGGGSMFVSKDGGKTFTFNKSADEIPGNLYKVKF
FGDKGFVLGSEGVLLRYKGIA
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mRNA from alignment at CM002456.1:908964..910834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna989 ID=rna989|Name=rna989|organism=Nannochloropsis gaditana|type=mRNA|length=1871bp|location=Sequence derived from alignment at CM002456.1:908964..910834- (Nannochloropsis gaditana)
CCCGTCTGACTGCCACTTTGTCTCATTTTTAGCCCCATCTCCCGTTCATC
CTGTACATATTATATCCAGAGAAGGATGAGAAAGGTAAATTTTCTTGTTG
CAGCATGCGCAATGGTGCTGGGGGTGTCTCCAGCGTCAGCATTTATGCCT
TTCGCAGCTCGATCGTCTAGGTGAGTAACACCGTGCGCAACGGTGTGGTC
GCATATTCTGGCTTCACGTCGACTTTGTTAGAGGATCGTGTAGAATACCA
AAGATGGACATTAGGTCGAACATTGCCTATCAAATGCGAAACACTTATTC
TGTATTCAGAGGAAGCAATCCATCCCCTTGAATCGCACCCTAATCGAGCT
TTCTGCCCGACCTCCGGGACATTCACAGTGCAATTAAGATGAGCGCCTCT
ACGGGAGAAAAGAGCAGCAGAAGTGAAAACATGCTGCCTGACAGCAGTGT
TTCTAGGCGGGATCTTGTGAAGACGACGTCTGTTGCAGCGGCTGCTCTCT
CCGCCGCGGGAGCTCTGGGAGGCTCGACACAGCCTGCAGCGGCGGCGTCG
AATTTCGCCTGGGAGCAGGTTACAGGCATCCCGATGGGCGCTACACTTTA
TGACGTGGACTTTGATTCGAAGGACCCAGAGCACGGGTGGATAGTAGGCT
CGAAAGGCACCTTCCTGGAGACAACAGACGGGGGCAGGTCGTGGGTGCCC
CGCTCCTTCGTCGACCTGGACCCCGACGAGGAGGTGACCTACCGCTTTGA
GCGCGTCAGCTTCAACAACGGCGAGGGCTGGATCATCGGAAAGCCCCCTA
TTCTGCTGCACACACAAGATTCGGGCAAGAGCTGGGAGCGCATTCCCCTG
TCTCCCAAGCTGCCCGGTGAGCCCTCAACGGTCTTCGCCACGGGCCCCAA
CTCGGCGGAGATGACCACGTCGACGGGCGCCATATACAAAACTACCAATG
CCGGGAGGAATTGGAAGGCGCAAGTCAAGGAAACGATCGACGCCACGCTC
AATCGCATCTCCTCTTCGGGAGTGAAAGGAGCCTCGTACTTCACCGGGTC
GATCATCTCGGTCGTCCGGGACCAGCTGTCTGGCGCCTACCTGGCCGTGT
CCTCTCGCGGAAACTTTTTCTTGACTTGGCTCCCGGGCCAAGACTTTTGG
GTGCCACATAACAGAGGGACCTCCCGGCGTATTCAGAACATGGGCTTCGT
CAAGGGGGACACGAGCAAAGGCGTATGGATGAGCTTGAACGGCGGCCTGT
TGCAGATATGCGAGCCAAATCAGGACCTGTCATCGGACGAGGAGTTCAAG
TTTGCGGATAGCAAGATCCGCTCGGGAGGATACGGCATTCTGGACGTGTC
GTGGAAAGACGAGCAGGAGGTGTGGGCGGTGGGGGGGGGCGGCTCCATGT
TCGTGTCCAAGGACGGGGGCAAGACCTTCACTTTCAACAAGAGTGCGGAC
GAGATCCCAGGTAACTTGTATAAGGTCAAGTTTTTCGGCGACAAAGGATT
TGTCCTCGGGTCAGAGGGGGTCCTCCTGCGGTACAAAGGTATTGCCTGAG
TCGAGGATAGGTGGGGGAAAAGGAAATGGAGACGCAGCGGTGTTGGCGGG
AGCTAGAAACGCGCCGGGCCCTTAAAAGACGGTGCGAGATGCTGTGCTTT
CGATTGTTTGTTTGTACGTTTGAGGCATAACAGAGTGACGACAGCTCAGC
AATGTCGGTCACAAAACTGCATCCACAAGTCTAATGTGGGAAAACAAAAA
AGATGGGGTATTAGCAGCTTGTACCCGCTCGTATTTTTCAAATTATAGTT
ATTCGGAACCACTCCATTTACAAGAAGTTTCGCTACCTCGATGTCAAATC
TCGACACTCCGAGTGGTAAGT
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Coding sequence (CDS) from alignment at CM002456.1:908964..910834-

>rna989 ID=rna989|Name=rna989|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at CM002456.1:908964..910834- (Nannochloropsis gaditana)
TGCAATTAAGATGAGCGCCTCTACGGGAGAAAAGAGCAGCAGAAGTGAAA
ACATGCTGCCTGACAGCAGTGTTTCTAGGCGGGATCTTGTGAAGACGACG
TCTGTTGCAGCGGCTGCTCTCTCCGCCGCGGGAGCTCTGGGAGGCTCGAC
ACAGCCTGCAGCGGCGGCGTCGAATTTCGCCTGGGAGCAGGTTACAGGCA
TCCCGATGGGCGCTACACTTTATGACGTGGACTTTGATTCGAAGGACCCA
GAGCACGGGTGGATAGTAGGCTCGAAAGGCACCTTCCTGGAGACAACAGA
CGGGGGCAGGTCGTGGGTGCCCCGCTCCTTCGTCGACCTGGACCCCGACG
AGGAGGTGACCTACCGCTTTGAGCGCGTCAGCTTCAACAACGGCGAGGGC
TGGATCATCGGAAAGCCCCCTATTCTGCTGCACACACAAGATTCGGGCAA
GAGCTGGGAGCGCATTCCCCTGTCTCCCAAGCTGCCCGGTGAGCCCTCAA
CGGTCTTCGCCACGGGCCCCAACTCGGCGGAGATGACCACGTCGACGGGC
GCCATATACAAAACTACCAATGCCGGGAGGAATTGGAAGGCGCAAGTCAA
GGAAACGATCGACGCCACGCTCAATCGCATCTCCTCTTCGGGAGTGAAAG
GAGCCTCGTACTTCACCGGGTCGATCATCTCGGTCGTCCGGGACCAGCTG
TCTGGCGCCTACCTGGCCGTGTCCTCTCGCGGAAACTTTTTCTTGACTTG
GCTCCCGGGCCAAGACTTTTGGGTGCCACATAACAGAGGGACCTCCCGGC
GTATTCAGAACATGGGCTTCGTCAAGGGGGACACGAGCAAAGGCGTATGG
ATGAGCTTGAACGGCGGCCTGTTGCAGATATGCGAGCCAAATCAGGACCT
GTCATCGGACGAGGAGTTCAAGTTTGCGGATAGCAAGATCCGCTCGGGAG
GATACGGCATTCTGGACGTGTCGTGGAAAGACGAGCAGGAGGTGTGGGCG
GTGGGGGGGGGCGGCTCCATGTTCGTGTCCAAGGACGGGGGCAAGACCTT
CACTTTCAACAAGAGTGCGGACGAGATCCCAGGTAACTTGTATAAGGTCA
AGTTTTTCGGCGACAAAGGATTTGTCCTCGGGTCAGAGGGGGTCCTCCTG
CGGTACAAAGGTATTGCCTGAATGAGAAAGGTAAATTTTCTTGTTGCAGC
ATGCGCAATGGTGCTGGGGGTGTCTCCAGCGTCAGCATTTATGCCTTTCG
CAGCTCGATCGTCTAGTGCAATTAAGATGAGCGCCTCTACGGGAGAAAAG
AGCAGCAGAAGTGAAAACATGCTGCCTGACAGCAGTGTTTCTAGGCGGGA
TCTTGTGAAGACGACGTCTGTTGCAGCGGCTGCTCTCTCCGCCGCGGGAG
CTCTGGGAGGCTCGACACAGCCTGCAGCGGCGGCGTCGAATTTCGCCTGG
GAGCAGGTTACAGGCATCCCGATGGGCGCTACACTTTATGACGTGGACTT
TGATTCGAAGGACCCAGAGCACGGGTGGATAGTAGGCTCGAAAGGCACCT
TCCTGGAGACAACAGACGGGGGCAGGTCGTGGGTGCCCCGCTCCTTCGTC
GACCTGGACCCCGACGAGGAGGTGACCTACCGCTTTGAGCGCGTCAGCTT
CAACAACGGCGAGGGCTGGATCATCGGAAAGCCCCCTATTCTGCTGCACA
CACAAGATTCGGGCAAGAGCTGGGAGCGCATTCCCCTGTCTCCCAAGCTG
CCCGGTGAGCCCTCAACGGTCTTCGCCACGGGCCCCAACTCGGCGGAGAT
GACCACGTCGACGGGCGCCATATACAAAACTACCAATGCCGGGAGGAATT
GGAAGGCGCAAGTCAAGGAAACGATCGACGCCACGCTCAATCGCATCTCC
TCTTCGGGAGTGAAAGGAGCCTCGTACTTCACCGGGTCGATCATCTCGGT
CGTCCGGGACCAGCTGTCTGGCGCCTACCTGGCCGTGTCCTCTCGCGGAA
ACTTTTTCTTGACTTGGCTCCCGGGCCAAGACTTTTGGGTGCCACATAAC
AGAGGGACCTCCCGGCGTATTCAGAACATGGGCTTCGTCAAGGGGGACAC
GAGCAAAGGCGTATGGATGAGCTTGAACGGCGGCCTGTTGCAGATATGCG
AGCCAAATCAGGACCTGTCATCGGACGAGGAGTTCAAGTTTGCGGATAGC
AAGATCCGCTCGGGAGGATACGGCATTCTGGACGTGTCGTGGAAAGACGA
GCAGGAGGTGTGGGCGGTGGGGGGGGGCGGCTCCATGTTCGTGTCCAAGG
ACGGGGGCAAGACCTTCACTTTCAACAAGAGTGCGGACGAGATCCCAGGT
AACTTGTATAAGGTCAAGTTTTTCGGCGACAAAGGATTTGTCCTCGGGTC
AGAGGGGGTCCTCCTGCGGTACAAAGGTATTGCCTGAATGAGAAAGGTAA
ATTTTCTTGTTGCAGCATGCGCAATGGTGCTGGGGGTGTCTCCAGCGTCA
GCATTTATGCCTTTCGCAGCTCGATCGTCTAG
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Synonyms
Publications